A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes.

by: S Aerts, P Van Loo, Y Moreau, B De Moor

Bioinformatics, Vol. 20, No. 12. (12 August 2004), pp. 1974-1976.

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Abstract

SUMMARY: The implementation of a genetic algorithm is described that provides a fast method of searching for the optimal combination of transcription factor binding sites in a set of regulatory sequences. AVAILABILITY: The algorithm can be used transparently as a web service from within the Toucan software. Toucan can be accessed at http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php. A standalone version of the software is available upon request.

@article{citeulike:3531, abstract = {SUMMARY: The implementation of a genetic algorithm is described that provides a fast method of searching for the optimal combination of transcription factor binding sites in a set of regulatory sequences. AVAILABILITY: The algorithm can be used transparently as a web service from within the Toucan software. Toucan can be accessed at http://www.esat.kuleuven.ac.be/\~{}saerts/software/toucan.php. A standalone version of the software is available upon request.}, address = {Department of Electrical Engineering (ESAT-SCD), Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, 3001 Heverlee (Leuven), Belgium. stein.aerts@esat.kuleuven.ac.be}, author = {Aerts, S. and Van Loo, P. and Moreau, Y. and De Moor, B. }, citeulike-article-id = {3531}, issn = {1367-4803}, journal = {Bioinformatics}, keywords = {algorithms, genetic}, month = {August}, number = {12}, pages = {1974--1976}, posted-at = {2008-01-08 10:27:02}, priority = {3}, title = {A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/15044242}, volume = {20}, year = {2004} }

RIS record

TY - JOUR ID - citeulike:3531 L3 - citeulike-article-id:3531 TI - A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes. JF - Bioinformatics VL - 20 IS - 12 SP - 1974 EP - 1976 AD - Department of Electrical Engineering (ESAT-SCD), Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, 3001 Heverlee (Leuven), Belgium. stein.aerts@esat.kuleuven.ac.be SN - 1367-4803 N2 - SUMMARY: The implementation of a genetic algorithm is described that provides a fast method of searching for the optimal combination of transcription factor binding sites in a set of regulatory sequences. AVAILABILITY: The algorithm can be used transparently as a web service from within the Toucan software. Toucan can be accessed at http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php. A standalone version of the software is available upon request. KW - algorithms KW - genetic AU - Aerts, S AU - Van Loo, P AU - Moreau, Y AU - De Moor, B PY - 2004/08/12/ UR - http://view.ncbi.nlm.nih.gov/pubmed/15044242 ER -

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