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wenhan さんのウォッチリスト [214 articles]

最近追加された論文の中で wenhan さんの設定条件に合うもののリストです
  • A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
    BMC Bioinformatics, Vol. 9 (23 January 2008), 34.
    by Patrick Schloss, Jo Handelsman
    posted to function-comparison by bluto on 2008-07-07 22:37:25 as ** along with 4 people and 3 groups mjetten alexisfjdufresne jmeppley Thaverkamp microbiology_nijmegen anammox Microbial-Ecology
  • The BellKor solution to the Netflix Prize
    by Robert M Bell, Yehuda Koren, Chris Volinsky
    posted to binning by azazello on 2008-06-09 19:33:46 as ** along with 1 person and 1 group zhaobr RecommenderSystem
  • A short introduction to boosting
    (1999)
    by Y Freund, R Schapire
    posted to binning by azazello on 2008-06-09 19:32:00 as ** along with 2 people and 1 group OriginalLurch rogerblake clab
  • Stochastic gradient boosting
    by J Friedman
    posted to binning by azazello on 2008-06-09 19:31:00 as **
  • k-means++: the advantages of careful seeding
    (2007), pp. 1027-1035.
    by David Arthur, Sergei Vassilvitskii
    posted to binning by azazello on 2008-06-09 19:29:52 as **
  • Lessons from the Netflix prize challenge
    SIGKDD Explor. Newsl., Vol. 9, No. 2. (December 2007), pp. 75-79.
    by Robert M Bell, Yehuda Koren
    posted to binning by azazello on 2008-06-09 18:51:40 as ** along with 2 people lfriedl bigbossman
  • Genomic mapping by fingerprinting random clones: a mathematical analysis.
    Genomics, Vol. 2, No. 3. (April 1988), pp. 231-239.
    by ES Lander, MS Waterman
    posted to wgs coverage assembly by bluto on 2008-05-19 13:22:57 as ** along with 4 people and 1 group farhat ggrot RMGraze joshuashen Bioinformatics
  • Computational identification of putative programmed translational frameshift sites
    Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1046-1053.
    by Atul A Shah, Michael C Giddings, Jasmin B Parvaz, Raymond F Gesteland, John F Atkins, Ivaylo P Ivanov
    posted to frameshift by azazello on 2008-05-11 15:05:02 as **
  • Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems
    Microbiology, Vol. 154, No. 2. (1 February 2008), pp. 347-359.
    by Philippe N Bertin, Claudine Medigue, Philippe Normand
    posted to metagenomics by bluto on 2008-05-09 11:15:05 as ** along with 3 people vrich operon Olaf_Ilzins
  • Microbial ecology of four coral atolls in the Northern Line Islands.
    PLoS ONE, Vol. 3, No. 2. (2008)
    by EA Dinsdale, O Pantos, S Smriga, RA Edwards, F Angly, L Wegley, M Hatay, D Hall, E Brown, M Haynes, L Krause, E Sala, SA Sandin, RV Thurber, BL Willis, F Azam, N Knowlton, F Rohwer
    posted to coral 454 by bluto on 2008-05-06 08:38:39 as read
  • An Eulerian path approach to DNA fragment assembly.
    Proc Natl Acad Sci U S A, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753.
    by PA Pevzner, H Tang, MS Waterman
    posted to cse by azazello on 2008-04-28 15:43:26 as ** along with 7 people and 2 groups jwhitney brl A_Olympia briann jmeppley AaronDarling nedwards Philosophy_of_Information Blog_and_Wiki_Research
  • A new approach to fragment assembly in DNA sequencing
    (2001), pp. 256-267.
    by Pavel A Pevzner, Haixu Tang, Michael S Waterman
    posted to cse by azazello on 2008-04-28 14:56:04 as **
  • notes Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
    posted to phage 454 by bluto on 2008-04-23 09:34:34 as ** along with 9 people and 3 groups oelemento vaulot vrich jmeppley alexisfjdufresne jyuh djkt neils kinestetika Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen
  • Whole-genome re-sequencing
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 545-552.
    by David R Bentley
    posted to no-tag by azazello on 2008-04-15 21:01:11 as ** along with 4 people and 3 groups kmdaily jo_davies indigoviolet dchughes EisenLab G4ID Genetics-of-Gambling
  • ICDS database: interrupted CoDing sequences in prokaryotic genomes.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by E Perrodou, C Deshayes, J Muller, C Schaeffer, A Van Dorsselaer, R Ripp, O Poch, JM Reyrat, O Lecompte
    posted to frameshift by azazello on 2008-04-11 19:12:09 as ** along with 1 person alexl
  • Metagenomics: Read length matters
    Appl. Environ. Microbiol. (11 January 2008), AEM.02181-07.
    by Eric K Wommack, Jaysheel Bhavsar, Jacques Ravel
    posted to qual by azazello on 2008-03-27 18:29:34 as ** along with 8 people and 2 groups alexl bluto alexisfjdufresne jmeppley kinestetika Thaverkamp skato_toyaku rvgomes Microbial-Ecology microbiology_nijmegen
  • Mauve: multiple alignment of conserved genomic sequence with rearrangements.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1394-1403.
    by AC Darling, B Mau, FR Blattner, NT Perna
    posted to qual by azazello on 2008-03-25 13:59:11 as ** along with 6 people and 1 group Neeperando mariakmejia operon catmat AaronDarling leelarcombe gatech-compgenomics
  • Toward a census of bacteria in soil.
    PLoS Comput Biol, Vol. 2, No. 7. (21 July 2006)
    by PD Schloss, J Handelsman
    posted to qual by azazello on 2008-03-25 13:50:25 as ** along with 2 people and 2 groups mjetten fornstar microbiology_nijmegen anammox
  • Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e82.
    by Jonathan A Eisen
    posted to qual by azazello on 2008-03-24 17:25:24 as ** along with 4 people and 1 group jmeppley jdelcampo beatrizfernandez xingxu Microbial-Ecology
  • Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
    Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3473-3478.
    by C Schoen, J Blom, H Claus, A Schramm-Glück, P Brandt, T Müller, A Goesmann, B Joseph, S Konietzny, O Kurzai, C Schmitt, T Friedrich, B Linke, U Vogel, M Frosch
    posted to qual by azazello on 2008-03-24 13:38:46 as ** along with 1 person and 1 group martainn gatech-compgenomics
  • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Nat Methods (29 April 2007)
    by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, Harris Shapiro, Eugene Goltsman, Alice C C McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C C Kyrpides
    posted to qual by azazello on 2008-03-24 04:18:54 as ** along with 8 people and 3 groups alexl mjetten carlk Yanno oamg jmeppley bluto GustavoLacerda microbiology_nijmegen Glimcher_Lab Bioinformatics
  • The greedy path-merging algorithm for contig scaffolding
    J. ACM, Vol. 49, No. 5. (September 2002), pp. 603-615.
    by Daniel H Huson, Knut Reinert, Eugene W Myers
    posted to qual by azazello on 2008-03-24 02:17:58 as ** along with 1 person and 1 group tpreeprem gatech-compgenomics
  • CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads
    ArXiv e-prints, Vol. 708 (August 2007)
    by S Chatterji, I Yamazaki, Z Bai, J Eisen
    posted to qual by azazello on 2008-03-21 17:56:17 as **
  • A general approach to single-nucleotide polymorphism discovery.
    Nat Genet, Vol. 23, No. 4. (December 1999), pp. 452-456.
    by GT Marth, I Korf, MD Yandell, RT Yeh, Z Gu, H Zakeri, NO Stitziel, L Hillier, PY Kwok, WR Gish
    posted to qual by azazello on 2008-03-21 15:37:44 as ** along with 3 people and 1 group farhat gpappas Ayest gatech-compgenomics
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
    posted to qual by azazello on 2008-03-21 15:36:49 as ** along with 5 people tharris iris42 GustavoLacerda dandaman caseybrown
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to qual by azazello on 2008-03-19 17:08:41 as ** along with 11 people Ema Neeperando brl briann operon timflutre prajlondhe nedwards urgi yoanjacquemin dmc
  • Extending assembly of short DNA sequences to handle error.
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2942-2944.
    by WR Jeck, JA Reinhardt, DA Baltrus, MT Hickenbotham, V Magrini, ER Mardis, JL Dangl, CD Jones
    posted to qual by azazello on 2008-03-19 17:04:31 as ** along with 2 people Neeperando jyuh
  • The fragment assembly string graph.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by EW Myers
    posted to qual by azazello on 2008-03-19 17:03:06 as ** along with 2 people isimpson Neeperando
  • ALLPATHS: De novo assembly of whole-genome shotgun microreads.
    Genome Res (13 March 2008)
    by Jonathan Butler, Iain Maccallum, Michael Kleber, Ilya A A Shlyakhter, Matthew K K Belmonte, Eric S S Lander, Chad Nusbaum, David B B Jaffe
    posted to qual by azazello on 2008-03-18 00:16:44 as ** along with 9 people and 1 group GeeSharpMinor iris42 tharris GustavoLacerda sharpton Neeperando jwhitney stajich hpaces Berkeley Mycology
  • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
    Genome Res, Vol. 17, No. 11. (November 2007), pp. 1697-1706.
    by Juliane C C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to qual by azazello on 2008-03-17 23:47:48 as ** along with 8 people and 1 group iris42 jwhitney timflutre stajich ghattem GustavoLacerda niallhaslam flexer Berkeley Mycology
  • Whole-genome sequencing and assembly with high-throughput, short-read technologies.
    PLoS ONE, Vol. 2 (2007)
    by A Sundquist, M Ronaghi, H Tang, P Pevzner, S Batzoglou
    posted to qual by azazello on 2008-03-17 23:47:33 as ** along with 3 people and 1 group iris42 jyuh nedwards gatech-compgenomics
  • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
    Genome Res (10 March 2008)
    by David Hernandez, Patrice Francois, Laurent Farinelli, Magne Osteras, Jacques Schrenzel
    posted to qual by azazello on 2008-03-17 23:46:07 as ** along with 6 people and 3 groups balicea Neeperando jmeppley stajich Katje iris42 microbiology_nijmegen Berkeley Mycology gatech-compgenomics
  • Colourful coexistence of red and green picocyanobacteria in lakes and seas
    Ecology Letters, Vol. 10, No. 4. (April 2007), pp. 290-298.
    by Stomp, Maayke, Huisman, Jef, Voros, Lajos, Pick, R Frances, Laamanen, Maria, Haverkamp, Thomas, Stal, J Lucas
    posted to biodiversity synechococcus by bluto on 2008-03-15 21:32:29 as ** along with 1 person and 1 group Stenuite African_Lakes_Limnology
  • Assembling millions of short DNA sequences using SSAKE
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501.
    by Warren, L Rene, Sutton, G Granger, Jones, JM Steven, Holt, A Robert
    posted to qual by azazello on 2008-03-15 18:46:41 as ** along with 2 people iris42 nmohelli
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to qual by azazello on 2008-03-15 18:24:08 as ** along with 10 people and 5 groups mjetten ana nickluscombe michC bluto agg19954 TaqSys Thaverkamp larsjuhljensen rvgomes microbiology_nijmegen structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • Pyrobayes: an improved base caller for SNP discovery in pyrosequences
    Nature Methods, Vol. 5, No. 2. (13 January 2008), pp. 179-181.
    by Aaron R Quinlan, Donald A Stewart, Michael P Strömberg, Gábor T Marth
    posted to qual by azazello on 2008-03-10 19:24:14 as ** along with 3 people and 1 group jyuh mariakmejia jmeppley gatech-compgenomics
  • Estimating Continuous Distributions in Bayesian Classifiers
    pp. 338-345.
    by George H John, Pat Langley
    posted to cs frameshift by azazello on 2008-02-28 21:02:18 as ** along with 6 people and 2 groups JoSeK garyfeng cdnewbee xiaoyan2006 rsantana meisi ReadingLab VT_DLRL
  • A photosynthetic alveolate closely related to apicomplexan parasites
    Nature, Vol. 451, No. 7181., pp. 959-963.
    by Robert B Moore, Miroslav Oborník, Jan Janouškovec, Tomáš Chrudimský, Marie Vancová, David H Green, Simon W Wright, Noel W Davies, Christopher JS Bolch, Kirsten Heimann, Jan Šlapeta, Ove Hoegh-Guldberg, John M Logsdon, Dee A Carter
    posted to photosynthesis by bluto on 2008-02-23 22:50:55 as **
  • Genome evolution in cyanobacteria: The stable core and the variable shell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2510-2515.
    by Tuo Shi, Paul G Falkowski
    posted to evolution prochlorococcus synechococcus by bluto on 2008-02-23 22:44:00 as ** along with 4 people and 2 groups tuoshi vaulot operon Thaverkamp Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • The Native Bacterioplankton Community in the Central Baltic Sea Is Influenced by Freshwater Bacterial Species
    Appl. Environ. Microbiol., Vol. 74, No. 2. (15 January 2008), pp. 503-515.
    by L Riemann, C Leitet, T Pommier, K Simu, K Holmfeldt, U Larsson, A Hagstrom
    posted to metagenomic-project by bluto on 2008-02-14 09:07:29 as ** along with 1 person Thaverkamp
  • Hawkeye: a visual analytics tool for genome assemblies
    Genome Biology, Vol. 8 (09 March 2007), R34.
    by Michael C Schatz, Adam M Phillippy, Ben Shneiderman, Steven L Salzberg
    posted to qual by azazello on 2008-02-12 23:36:36 as ** along with 2 people and 2 groups Neeperando stajich Berkeley Mycology gatech-compgenomics
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to coevolution by bluto on 2008-02-06 16:35:04 as ** along with 12 people and 1 group paolomarcatili tmmurali brant balicea sebastien_vigneau cjeans aconesa Katje roys friendpine huali mdstobbe microbiology_nijmegen
  • The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 365-370.
    by B Boeckmann, A Bairoch, R Apweiler, MC Blatter, A Estreicher, E Gasteiger, MJ Martin, K Michoud, C O'Donovan, I Phan, S Pilbout, M Schneider
    posted to no-tag by azazello on 2008-02-03 02:24:37 as ** along with 6 people chrn chad_davis dgront incovoma sgoetz PunkRock
  • Data Mining: Practical Machine Learning Tools and Techniques, Second Edition (Morgan Kaufmann Series in Data Management Systems)
    (08 June 2005)
    by Ian H Witten, Eibe Frank
    posted to no-tag by azazello on 2008-02-03 02:18:36 as ** along with 25 people and 5 groups akastrin eegilbert napvasconcelos soramame_0518 quianominorleo abellogin sb-3000 sammydre balicea sdvillal caporaso AbnerCYH brunomelo dejang mdifranc BastianSpanneberg velasco ezralanglois pprett gmonce fernandohbc scorreia_pro csacca jdu bobychan WAND AI biomedical-nlp RiSE CSBBGraphTheory
  • Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.
    PLoS Biol, Vol. 3, No. 5. (May 2005)
    by MB Sullivan, ML Coleman, P Weigele, F Rohwer, SW Chisholm
    posted to myo podo prochlorococcus synechococcus by bluto on 2008-01-31 15:40:31 as ** along with 1 person and 1 group Thaverkamp Microbial-Ecology
  • Projector: automatic contig mapping for gap closure purposes.
    Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003)
    by SA van Hijum, AL Zomer, OP Kuipers, J Kok
    posted to scaffolding by azazello on 2008-01-25 17:13:25 as ** along with 1 group gatech-compgenomics
  • Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by SA van Hijum, AL Zomer, OP Kuipers, J Kok
    posted to qual scaffolding by azazello on 2008-01-25 17:12:53 as ** along with 1 group gatech-compgenomics
  • Population genomics in natural microbial communities
    Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 508-516.
    by Rachel J Whitaker, Jillian F Banfield
    posted to biodiversity community-genomics by bluto on 2008-01-24 12:40:06 as ** along with 1 person jmeppley
  • Inference of population genetic parameters in metagenomics: A clean look at messy data
    Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327.
    by Philip L Johnson, Montgomery Slatkin
    posted to biodiversity metagenomics by bluto on 2008-01-23 16:34:52 as ** along with 1 person jmeppley
  • PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.
    BMC Bioinformatics, Vol. 6, No. 1. (2 March 2005)
    by F Angly, B Rodriguez-Brito, D Bangor, P McNairnie, M Breitbart, P Salamon, B Felts, J Nulton, J Mahaffy, F Rohwer
    posted to biodiversity lander-waterman by bluto on 2008-01-23 13:49:08 as ** along with 2 people knaseanka jmeppley
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/wenhan/watchlist

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