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wenhan metagenomics_0208 [79 articles]

最近 wenhan さんのライブラリに追加された論文の中から タグ metagenomics_0208. You can also see everyone's metagenomics_0208.
  • The TIGRFAMs database of protein families.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 371-373.
    by DH Haft, JD Selengut, O White
    posted to metagenomics_0208 by wenhan on 2008-02-15 21:55:30 as ** along with 2 people Cortel siebertm
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 32 Database issue (1 January 2004)
    by A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths-Jones, A Khanna, M Marshall, S Moxon, EL Sonnhammer, DJ Studholme, C Yeats, SR Eddy
    posted to metagenomics_0208 by wenhan on 2008-02-15 21:52:42 as ** along with 4 people LeightonP ziquje chad_davis cjeans
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 276-280.
    by A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, S Griffiths-Jones, KL Howe, M Marshall, EL Sonnhammer
    posted to metagenomics_0208 by wenhan on 2008-02-15 21:39:08 as ** along with 7 people bandrewfox ziquje Cortel cjeans mirzazadeh antonkratz IrinaMoreira
  • TIGRFAMs: a protein family resource for the functional identification of proteins.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 41-43.
    by DH Haft, BJ Loftus, DL Richardson, F Yang, JA Eisen, IT Paulsen, O White
    posted to metagenomics_0208 by wenhan on 2008-02-15 21:35:02 as ** along with 1 person ziquje
  • Predicting function: from genes to genomes and back.
    J Mol Biol, Vol. 283, No. 4. (6 November 1998), pp. 707-725.
    by P Bork, T Dandekar, Y Diaz-Lazcoz, F Eisenhaber, M Huynen, Y Yuan
    posted to metagenomics_0208 by wenhan on 2008-02-15 21:24:34 as ** along with 1 person bootsy
  • Orthology, paralogy and proposed classification for paralog subtypes.
    Trends Genet, Vol. 18, No. 12. (December 2002), pp. 619-620.
    by EL Sonnhammer, EV Koonin
    posted to metagenomics_0208 by wenhan on 2008-02-15 21:17:59 as **
  • Large Margin Hidden Markov Models for Automatic Speech Recognition
    (2006), pp. 1249-1256.
    by Fei Sha, Lawrence K Saul
    edited by Bernhard Schölkopf, John C Platt, Thomas Hoffman, Bernhard Schölkopf, John C Platt, Thomas Hoffman
    posted to metagenomics_0208 by wenhan on 2008-02-14 22:56:52 as **
  • Using Dynamic Time Warping to Bootstrap HMM-Based Clustering of Time Series
    Lecture Notes in Computer Science, Vol. 1828 (2001), pp. 35-??.
    by Tim Oates, Laura Firoiu, Paul R Cohen
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:23:27 as **
  • Exact indexing of dynamic time warping
    (2002)
    by E Keogh
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:22:54 as ** along with 1 person dimatura
  • Clustering Sequences with Hidden Markov Models
    Vol. 9 (1997)
    by Padhraic Smyth
    edited by Michael C Mozer, Michael I Jordan, Thomas Petsche
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:22:17 as **
  • Fast curvature matrix-vector products for second-order gradient descent
    Neural Computation, Vol. 14, No. 7. (2002)
    by N Schraudolph
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:21:52 as **
  • Max margin Markov networks
    (2003)
    by B Taskar, C Guestrin, D Koller
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:14:57 as ** along with 5 people and 1 group davidr buescher76 wcohen wnpx mdreid Statistical Machine Learning
  • Hidden markov support vector machines
    (2003)
    by Y Altun, I Tsochantaridis, T Hofmann
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:12:16 as **
  • Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond (Adaptive Computation and Machine Learning)
    (15 December 2001)
    by Bernhard Schlkopf, Alexander J Smola
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:03:05 as ** along with 9 people and 1 group quianominorleo ecome sdvillal AbnerCYH raiyar librain jung_dalglish robotact singhsh Medical Image Analysis and Visualization @ OSU
  • Genetic Engineering: Principles and Methods
    (24 October 2005)
    by JK Setlow
    posted to metagenomics_0208 by wenhan on 2008-02-14 21:00:56 as **
  • Problems and Solutions in Biological Sequence Analysis
    (11 September 2006)
    by Mark Borodovsky, Svetlana Ekisheva
    posted to metagenomics_0208 200806_prop by wenhan on 2008-02-14 20:17:32 as **
  • Biological Sequence Analysis : Probabilistic Models of Proteins and Nucleic Acids
    (01 July 1999)
    by Richard Durbin, Sean R Eddy, Anders Krogh, Graeme Mitchison
    posted to metagenomics_0208 by wenhan on 2008-02-14 20:16:28 as ** along with 11 people and 1 group xiaobeizhao derek_farn stanley ujh pcahan1 balajis indigoviolet moborg emranmohdtamil dullhunk rabio EisenLab
  • Toward Automatic Reconstruction of a Highly Resolved Tree of Life
    Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287.
    by Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:49:47 as ** along with 13 people and 5 groups Ema diamantis Retchless knaseanka dpollard tny dchughes nirfriedman cmm azazello maximilianh cmzmasek lonshy EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
  • Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract.
    Appl Environ Microbiol, Vol. 73, No. 4. (February 2007), pp. 1388-1392.
    by ES Klaassens, WM de Vos, EE Vaughan
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:49:39 as ** along with 6 people and 3 groups mcox dchughes michC azazello nitiniitk barberan G4ID Genetics-of-Gambling MBLAB
  • Codon usage between genomes is constrained by genome-wide mutational processes
    PNAS, Vol. 101, No. 10. (9 March 2004), pp. 3480-3485.
    by Swaine L Chen, William Lee, Alison K Hottes, Lucy Shapiro, Harley H Mcadams
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:49:33 as ** along with 2 people and 1 group operon azazello MBLAB
  • Automated correction of genome sequence errors.
    Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 562-569.
    by P Gajer, M Schatz, SL Salzberg
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:48:52 as ** along with 1 person and 1 group azazello MBLAB
  • Multiple sequence alignment using partial order graphs.
    Bioinformatics, Vol. 18, No. 3. (March 2002), pp. 452-464.
    by C Lee, C Grasso, MF Sharlow
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:48:39 as ** along with 5 people and 3 groups ana Cortel AbnerCYH azazello gjuggler structural_bioinformatics Bioinformatics MBLAB
  • The integrated microbial genomes (IMG) system.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by VM Markowitz, F Korzeniewski, K Palaniappan, E Szeto, G Werner, A Padki, X Zhao, I Dubchak, P Hugenholtz, I Anderson, A Lykidis, K Mavromatis, N Ivanova, NC Kyrpides
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:48:25 as ** along with 1 person and 1 group azazello MBLAB
  • Heuristic approach to deriving models for gene finding.
    Nucleic Acids Res, Vol. 27, No. 19. (1 October 1999), pp. 3911-3920.
    by J Besemer, M Borodovsky
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:47:11 as ** along with 4 people and 2 groups GustavoLacerda alexl azazello indigoviolet MBLAB EisenLab
  • GISMO--gene identification using a support vector machine for ORF classification.
    Nucleic Acids Res, Vol. 35, No. 2. (2007), pp. 540-549.
    by L Krause, AC McHardy, TW Nattkemper, A Pühler, J Stoye, F Meyer
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:46:59 as ** along with 1 person and 1 group azazello MBLAB
  • Detection of short protein coding regions within the cyanobacterium genome: application of the hidden Markov model.
    DNA Res, Vol. 3, No. 6. (31 December 1996), pp. 355-361.
    by T Yada, M Hirosawa
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:46:18 as ** along with 1 person and 1 group azazello MBLAB
  • Development of joint application strategies for two microbial gene finders.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1622-1631.
    by AC McHardy, A Goesmann, A Pühler, F Meyer
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:45:55 as ** along with 1 person and 1 group azazello MBLAB
  • Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models.
    BMC Bioinformatics, Vol. 5 (5 March 2004)
    by S Mahony, JO McInerney, TJ Smith, A Golden
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:45:46 as ** along with 1 person and 1 group azazello MBLAB
  • YACOP: Enhanced gene prediction obtained by a combination of existing methods.
    In Silico Biol, Vol. 3, No. 4. (2003), pp. 441-451.
    by M Tech, R Merkl
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:45:38 as ** along with 1 person and 1 group azazello MBLAB
  • Dictionary-driven prokaryotic gene finding.
    Nucleic Acids Res, Vol. 30, No. 12. (15 June 2002), pp. 2710-2725.
    by T Shibuya, I Rigoutsos
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:43:22 as ** along with 1 person and 1 group azazello MBLAB
  • GeneMark.hmm: new solutions for gene finding.
    Nucleic Acids Res, Vol. 26, No. 4. (15 February 1998), pp. 1107-1115.
    by AV Lukashin, M Borodovsky
    posted to metagenomics_0208 200806_prop by wenhan on 2008-02-14 19:39:22 as ** along with 1 person and 1 group indigoviolet EisenLab
  • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
    Nucleic Acids Res, Vol. 29, No. 12. (15 June 2001), pp. 2607-2618.
    by J Besemer, A Lomsadze, M Borodovsky
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:37:08 as ** along with 2 people and 1 group vwchan azazello beta
  • Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.
    Nucleic Acids Res, Vol. 26, No. 12. (15 June 1998), pp. 2941-2947.
    by D Frishman, A Mironov, HW Mewes, M Gelfand
    posted to metagenomics_0208 200806_prop by wenhan on 2008-02-14 19:36:56 as ** along with 1 person and 1 group azazello MBLAB
  • ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.
    Nucleic Acids Res, Vol. 31, No. 6. (15 March 2003), pp. 1780-1789.
    by FB Guo, HY Ou, CT Zhang
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:36:50 as **
  • A hidden Markov model that finds genes in E. coli DNA.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4768-4778.
    by A Krogh, IS Mian, D Haussler
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:35:56 as ** along with 1 person and 1 group azazello MBLAB
  • EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance
    BMC Bioinformatics, Vol. 4, No. 1. (2003)
    by Thomas Larsen, Anders Krogh
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:35:07 as ** along with 1 person and 1 group azazello MBLAB
  • Identifying bacterial genes and endosymbiont DNA with Glimmer.
    Bioinformatics (19 January 2007)
    by Arthur L L Delcher, Kirsten A A Bratke, Edwin C C Powers, Steven L L Salzberg
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:34:32 as ** along with 1 person and 1 group azazello MBLAB
  • Comparative genome assembly.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248.
    by M Pop, A Phillippy, AL Delcher, SL Salzberg
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:34:09 as ** along with 7 people and 2 groups Ema Neeperando mariakmejia treangen azazello urgi tpreeprem MBLAB gatech-compgenomics
  • Hierarchical scaffolding with Bambus.
    Genome Res, Vol. 14, No. 1. (January 2004), pp. 149-159.
    by M Pop, DS Kosack, SL Salzberg
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:33:48 as ** along with 2 people and 1 group Neeperando azazello MBLAB
  • Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.
    Genome Biol, Vol. 6, No. 3. (2005)
    by SL Salzberg, JC Hotopp, AL Delcher, M Pop, DR Smith, MB Eisen, WC Nelson
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:33:36 as ** along with 1 person and 1 group azazello MBLAB
  • Mosaic tetracycline resistance genes are widespread in human and animal fecal samples.
    Antimicrob Agents Chemother, Vol. 51, No. 3. (March 2007), pp. 1115-1118.
    by AJ Patterson, MT Rincon, HJ Flint, KP Scott
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:32:24 as **
  • A whole-genome assembly of Drosophila.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204.
    by EW Myers, GG Sutton, AL Delcher, IM Dew, DP Fasulo, MJ Flanigan, SA Kravitz, CM Mobarry, KH Reinert, KA Remington, EL Anson, RA Bolanos, HH Chou, CM Jordan, AL Halpern, S Lonardi, EM Beasley, RC Brandon, L Chen, PJ Dunn, Z Lai, Y Liang, DR Nusskern, M Zhan, Q Zhang, X Zheng, GM Rubin, MD Adams, JC Venter
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:31:37 as ** along with 5 people and 3 groups cisevol bluto azazello tpreeprem yoanjacquemin Drosophila-Genetics-Genomics-2008 MBLAB gatech-compgenomics
  • Improved microbial gene identification with GLIMMER.
    Nucleic Acids Res, Vol. 27, No. 23. (1 December 1999), pp. 4636-4641.
    by AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
    posted to metagenomics_0208 200806_prop by wenhan on 2008-02-14 19:31:14 as ** along with 3 people ziquje dquest gelack
  • CRITICA: coding region identification tool invoking comparative analysis.
    Mol Biol Evol, Vol. 16, No. 4. (April 1999), pp. 512-524.
    by JH Badger, GJ Olsen
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:22:32 as **
  • MEGAN analysis of metagenomic data.
    Genome Res, Vol. 17, No. 3. (March 2007), pp. 377-386.
    by DH Huson, AF Auch, J Qi, SC Schuster
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:21:43 as ** along with 5 people and 2 groups hpaces alexl mjetten carpi azazello microbiology_nijmegen anammox
  • Accurate phylogenetic classification of variable-length DNA fragments
    Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72.
    by Alice C Mchardy, Héctor G Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:21:30 as ** along with 4 people and 3 groups djkt jlgreen bluto azazello iSEEM Green Lab MBLAB
  • Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples.
    DNA Res, Vol. 12, No. 5. (2005), pp. 281-290.
    by T Abe, H Sugawara, M Kinouchi, S Kanaya, T Ikemura
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:21:24 as ** along with 1 person bluto
  • TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.
    BMC Bioinformatics, Vol. 5 (26 October 2004)
    by H Teeling, J Waldmann, T Lombardot, M Bauer, FO Glöckner
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:20:25 as ** along with 4 people werwiesel jmeppley michC bluto
  • The phusion assembler.
    Genome Res, Vol. 13, No. 1. (2003), pp. 81-90.
    by JC Mullikin, Z Ning
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:20:15 as ** along with 3 people azazello bpb dmc
  • The Atlas genome assembly system.
    Genome Res, Vol. 14, No. 4. (April 2004), pp. 721-732.
    by P Havlak, R Chen, KJ Durbin, A Egan, Y Ren, XZ Song, GM Weinstock, RA Gibbs
    posted to metagenomics_0208 by wenhan on 2008-02-14 19:20:06 as ** along with 1 person Neeperando
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/wenhan/tag/metagenomics_0208

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