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treangen library [235 articles]

最近 treangen ordered by to_read.
  • Very small mobile repeated elements in cyanobacterial genomes.
    Genome research, Vol. 18, No. 9. (September 2008), pp. 1484-1499.
    by J Elhai, M Kato, S Cousins, P Lindblad, JL Costa
    posted to no-tag by treangen on 2008-09-21 21:26:27 as **
  • CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
    Science, Vol. 315, No. 5819. (23 March 2007), pp. 1709-1712.
    by Rodolphe Barrangou, Christophe Fremaux, Helene Deveau, Melissa Richards, Patrick Boyaval, Sylvain Moineau, Dennis A Romero, Philippe Horvath
    posted to no-tag by treangen on 2008-09-21 21:24:14 as ** along with 3 people operon jmeppley saru
  • Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation.
    Annual review of genetics, Vol. 40 (2006), pp. 307-333.
    by R Moxon, C Bayliss, D Hood
    posted to no-tag by treangen on 2008-09-21 21:20:14 as ** along with 1 person cambray
  • The impact of the neisserial DNA uptake sequences on genome evolution and stability
    Genome Biology, Vol. 9, No. 3. (2008)
    by Todd Treangen, Ole H Ambur, Tone Tonjum, Eduardo Rocha
    posted to no-tag by treangen on 2008-04-15 14:33:07 as ** along with 1 person neils
  • Factors affecting genetic transformation of Neisseria gonorrhoeae.
    J. Bacteriol., Vol. 129, No. 2. (1 February 1977), pp. 983-992.
    by GD Biswas, T Sox, E Blackman, PF Sparling
    posted to dus by treangen on 2006-11-29 21:57:20 as **
  • Microarray genomotyping of key experimental strains of Neisseria gonorrhoeae reveals gene complement diversity and five new neisserial genes associated with Minimal Mobile Elements.
    BMC Genomics, Vol. 5, No. 1. (13 April 2004)
    by LA Snyder, JK Davies, NJ Saunders
    posted to dus by treangen on 2006-11-29 21:43:22 as **
  • Genetic Diversity and Mosaicism at the por Locus of Neisseria gonorrhoeae
    J. Bacteriol., Vol. 181, No. 18. (15 September 1999), pp. 5591-5599.
    by Trevor C Fudyk, Ian W Maclean, Neil J Simonsen, Ephantus N Njagi, Joshua Kimani, Robert C Brunham, Francis A Plummer
    posted to dus by treangen on 2006-11-29 21:39:42 as **
  • Microevolution within a clonal population of pathogenic bacteria: recombination, gene duplication and horizontal genetic exchange in the opa gene family of Neisseria meningitidis
    Molecular Microbiology, Vol. 12, No. 2. (1994), pp. 171-180.
    by Marcia M Hobbs, Andrea Seiler, Mark Achtman, Janne G Cannon
    posted to dus by treangen on 2006-11-29 21:32:07 as **
  • Using multiple alignments to improve seeded local alignment algorithms
    Nucleic Acids Research, Vol. 33, No. 14. (2005), pp. 4563-4577.
    by Jason Flannick, Serafim Batzoglou
    posted to no-tag by treangen on 2006-05-12 16:58:04 as **
  • sFFT: a faster accurate computation of the p-value of the entropy score.
    J Comput Biol, Vol. 12, No. 4. (May 2005), pp. 416-430.
    by U Keich
    posted to no-tag by treangen on 2006-05-12 16:53:48 as ** along with 1 person nedwards
  • Telomeres, telomerase, and apoptosis
    Biochemistry and Cell Biology, Vol. 82, No. 4., 498.
    by Chiara Mondello, AI Scovassi
    posted to no-tag by treangen on 2006-05-04 22:38:42 as **
  • The many faces of sequence alignment
    Briefings in Bioinformatics, Vol. 6, No. 1. (March 2005), pp. 6-22.
    by Batzoglou Serafim
    posted to no-tag by treangen on 2006-05-04 15:06:59 as **
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to no-tag by treangen on 2006-05-04 15:04:33 as ** along with 22 people and 1 group pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas EisenLab
  • PatternHunter: faster and more sensitive homology search.
    Bioinformatics, Vol. 18, No. 3. (March 2002), pp. 440-445.
    by B Ma, J Tromp, M Li
    posted to no-tag by treangen on 2006-05-04 14:49:51 as ** along with 7 people umit nuke2005 catmat natstreet nedwards DickSilver bozdagd
  • PatternHunter II: highly sensitive and fast homology search.
    Genome Inform Ser Workshop Genome Inform, Vol. 14 (2003), pp. 164-175.
    by M Li, B Ma, D Kisman, J Tromp
    posted to no-tag by treangen on 2006-05-04 14:49:41 as ** along with 1 person nuke2005
  • Designing multiple simultaneous seeds for DNA similarity search.
    J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 847-861.
    by Y Sun, J Buhler
    posted to no-tag by treangen on 2006-05-04 14:38:41 as ** along with 2 people nuke2005 nedwards
  • Adapting to environmental changes using specialized paralogs
    Trends in Genetics, Vol. 24, No. 4. (April 2008), pp. 154-158.
    by Gabino Sanchez-Perez, Alex Mira, Gábor Nyiro, Lejla Pasic, Francisco Rodriguez-Valera
    posted to no-tag by treangen on 2008-07-11 15:32:49 as ***
  • Improved hit criteria for DNA local alignment.
    BMC Bioinformatics, Vol. 5 (14 October 2004)
    by L Noé, G Kucherov
    posted to no-tag by treangen on 2008-05-30 11:17:01 as *** along with 5 people umit AaronDarling timflutre nedwards bozdagd
  • PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell Brittnacher
    posted to no-tag by treangen on 2008-03-28 18:06:19 as *** along with 2 people neils maximilianh
  • Comparative genome assembly.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248.
    by M Pop, A Phillippy, AL Delcher, SL Salzberg
    posted to no-tag by treangen on 2008-02-12 08:02:48 as *** along with 7 people and 2 groups azazello wenhan urgi tpreeprem mariakmejia Neeperando Ema MBLAB gatech-compgenomics
  • Mind the gaps: Progress in progressive alignment
    Proceedings of the National Academy of Sciences, Vol. 102, No. 30. (26 July 2005), pp. 10411-10412.
    by DG Higgins, G Blackshields, IM Wallace
    posted to no-tag by treangen on 2008-02-12 06:54:40 as *** along with 2 people BioNica bpcusack
  • Multiple spaced seeds for homology search.
    Bioinformatics (5 September 2007)
    by Lucian Ilie, Silvana Ilie
    posted to no-tag by treangen on 2008-02-10 22:59:08 as *** along with 2 people cjeans nedwards
  • Patternhunter II: highly sensitive and fast homology search.
    J Bioinform Comput Biol, Vol. 2, No. 3. (September 2004), pp. 417-439.
    by M Li, B Ma, D Kisman, J Tromp
    posted to no-tag by treangen on 2008-02-10 22:58:40 as *** along with 2 people umit bozdagd
  • The Maintenance of Sex in Bacteria Is Ensured by Its Potential to Reload Genes
    Genetics, Vol. 174, No. 4. (1 December 2006), pp. 2173-2180.
    by Gergely J Szollosi, Imre Derenyi, Tibor Vellai
    posted to no-tag by treangen on 2008-02-09 11:58:52 as ***
  • Interference among deleterious mutations favours sex and recombination in finite populations
    Nature, Vol. 443, No. 7107., pp. 89-92.
    by Peter D Keightley, Sarah P Otto
    posted to no-tag by treangen on 2008-02-09 11:57:22 as *** along with 1 person emptyhb
  • Evolution of Natural Transformation: Testing the DNA Repair Hypothesis in Bacillus subtilis and Haemophilus influenzae
    Genetics, Vol. 133, No. 4. (1 April 1993), pp. 755-761.
    by RJ Redfield
    posted to no-tag by treangen on 2008-02-09 11:56:13 as ***
  • DNA Repair and the Evolution of Transformation in Haemophilus influenzae
    Genetics, Vol. 132, No. 4. (1 December 1992), pp. 893-898.
    by JA Mongold
    posted to no-tag by treangen on 2008-02-09 11:53:22 as ***
  • Transformation Proteins and DNA Uptake Localize to the Cell Poles in Bacillus subtilis
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 59-71.
    by Jeanette Hahn, Berenike Maier, Bert J Haijema, Michael Sheetz, David Dubnau
    posted to no-tag by treangen on 2008-02-09 11:51:46 as *** along with 1 person karfunkel
  • Intracellular protein and DNA dynamics in competent Bacillus subtilis cells.
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 73-84.
    by D Kidane, PL Graumann
    posted to no-tag by treangen on 2008-02-09 11:50:46 as *** along with 1 person johncumbers
  • DprA/Smf protein localizes at the DNA uptake machinery in competent Bacillus subtilis cells
    BMC Microbiology, Vol. 7 (28 November 2007), 105.
    by Serkalem Tadesse, Peter L Graumann
    posted to no-tag by treangen on 2008-02-09 11:49:19 as ***
  • Plastic cells and populations: DNA substrate characteristics in Helicobacter pylori transformation define a flexible but conservative system for genomic variation.
    FASEB J, Vol. 21, No. 13. (November 2007), pp. 3458-3467.
    by SM Levine, EA Lin, W Emara, J Kang, M DiBenedetto, T Ando, D Falush, MJ Blaser
    posted to no-tag by treangen on 2008-02-09 11:45:38 as *** along with 1 person xingxu
  • From The Cover: Competence-programmed predation of noncompetent cells in the human pathogen Streptococcus pneumoniae: Genetic requirements
    Proceedings of the National Academy of Sciences, Vol. 102, No. 24. (14 June 2005), pp. 8710-8715.
    by Sebastien Guiral, Tim J Mitchell, Bernard Martin, Jean-Pierre Claverys
    posted to no-tag by treangen on 2008-02-09 11:41:52 as ***
  • Competence-Induced Cells of Streptococcus pneumoniae Lyse Competence-Deficient Cells of the Same Strain during Cocultivation
    J. Bacteriol., Vol. 185, No. 24. (15 December 2003), pp. 7176-7183.
    by Hilde Steinmoen, Aina Teigen, Leiv S Havarstein
    posted to no-tag by treangen on 2008-02-09 11:40:29 as ***
  • Molecular and Biological Analysis of Eight Genetic Islands That Distinguish Neisseria meningitidis from the Closely Related Pathogen Neisseria gonorrhoeae
    Infect. Immun., Vol. 68, No. 4. (1 April 2000), pp. 2082-2095.
    by Silke R Klee, Xavier Nassif, Barica Kusecek, Petra Merker, Jean-Luc Beretti, Mark Achtman, Colin R Tinsley
    posted to no-tag by treangen on 2008-02-09 11:28:18 as ***
  • Acquired macrolide resistance genes and the 1 bp deletion in the mtrR promoter in Neisseria gonorrhoeae
    J. Antimicrob. Chemother., Vol. 51, No. 1. (1 January 2003), pp. 131-133.
    by Sydney L Cousin, William L Whittington, Marilyn C Roberts
    posted to no-tag by treangen on 2008-02-09 11:25:55 as ***
  • A chromosomally integrated bacteriophage in invasive meningococci
    J. Exp. Med., Vol. 201, No. 12. (20 June 2005), pp. 1905-1913.
    by Emmanuelle Bille, Jean-Ralph Zahar, Agnes Perrin, Sandrine Morelle, Paula Kriz, Keith A Jolley, Martin C Maiden, Catherine Dervin, Xavier Nassif, Colin R Tinsley
    posted to no-tag by treangen on 2008-02-09 11:24:07 as *** along with 1 person martainn
  • Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK.
    Mol Microbiol, Vol. 43, No. 5. (March 2002), pp. 1331-1345.
    by RM Berka, J Hahn, M Albano, I Draskovic, M Persuh, X Cui, A Sloma, W Widner, D Dubnau
    posted to no-tag by treangen on 2008-02-09 11:19:44 as *** along with 1 person mhucka
  • Do bacteria have sex?
    Nat Rev Genet, Vol. 2, No. 8. (2001), pp. 634-639.
    by Rosemary J Redfield
    posted to no-tag by treangen on 2008-02-09 11:18:43 as ***
  • Natural genetic exchange between Haemophilus and Neisseria: Intergeneric transfer of chromosomal genes between major human pathogens
    PNAS, Vol. 95, No. 21. (13 October 1998), pp. 12381-12385.
    by Simon J Kroll, Kathryn E Wilks, Jayne L Farrant, Paul R Langford
    posted to no-tag by treangen on 2008-02-09 11:15:38 as *** along with 1 person AaronDarling
  • Hypermutation in Pathogenic Bacteria: Frequent Phase Variation in Meningococci Is a Phenotypic Trait of a Specialized Mutator Biotype
    Molecular Cell, Vol. 3, No. 4. (April 1999), pp. 435-445.
    by Cecilia Bucci, Alfredo Lavitola, Paola Salvatore, Luigi Del Giudice, Domenica R Massardo, Carmelo B Bruni, Pietro Alifano
    posted to no-tag by treangen on 2008-02-09 11:12:15 as ***
  • DNA repair profiles of disease-associated isolates of Neisseria meningitidis.
    FEMS Immunol Med Microbiol, Vol. 49, No. 2. (March 2007), pp. 243-251.
    by T Davidsen, EK Amundsen, EA Rødland, T Tønjum
    posted to no-tag by treangen on 2008-02-09 11:07:19 as ***
  • Mutator clones of Neisseria meningitidis in epidemic serogroup A disease
    Proceedings of the National Academy of Sciences, Vol. 99, No. 9. (30 April 2002), pp. 6103-6107.
    by Anthony R Richardson, Zhong Yu, Tanja Popovic, Igor Stojiljkovic
    posted to no-tag by treangen on 2008-02-09 11:05:58 as ***
  • Complete and variant forms of the 'gonococcal genetic island' in Neisseria meningitidis.
    Microbiology, Vol. 151, No. Pt 12. (December 2005), pp. 4005-4013.
    by LA Snyder, SA Jarvis, NJ Saunders
    posted to no-tag by treangen on 2008-02-09 11:01:22 as ***
  • Neisseria gonorrhoeae secretes chromosomal DNA via a novel type IV secretion system
    Molecular Microbiology, Vol. 55, No. 6. (March 2005), pp. 1704-1721.
    by Holly L Hamilton, Nadia M Dominguez, Kevin J Schwartz, Kathleen T Hackett, Joseph P Dillard
    posted to no-tag by treangen on 2008-02-09 11:00:23 as ***
  • Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
    Genome Biology, Vol. 8 (21 February 2007), R22.
    by Carleton L Kingsford, Kunmi Ayanbule, Steven L Salzberg
    posted to no-tag by treangen on 2008-02-09 10:59:08 as *** along with 1 person msuarezdiez
  • Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 298-309.
    by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein
    posted to no-tag by treangen on 2008-02-06 21:41:17 as *** along with 8 people aprasad brant djkt grahamc dandaman mailund gjuggler AaronDarling
  • Confidence in comparative genomics
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 199-200.
    by Elliott H Margulies
    posted to no-tag by treangen on 2008-02-06 21:39:30 as *** along with 5 people pengchy djkt xingxu maximilianh boudinot
  • Orthology, paralogy and proposed classification for paralog subtypes
    Trends in Genetics, Vol. 18, No. 12. (1 December 2002), pp. 619-620.
    by Erik L Sonnhammer, Eugene V Koonin
    posted to no-tag by treangen on 2008-02-06 11:33:09 as *** along with 1 person cjeans
  • The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 902-911.
    by Yu Yi-Kuo, F Altschul
    posted to no-tag by treangen on 2008-02-04 15:53:03 as ***
  • The compositional adjustment of amino acid substitution matrices
    Proceedings of the National Academy of Sciences, Vol. 100, No. 26. (23 December 2003), pp. 15688-15693.
    by Yi-Kuo Yu, John C Wootton, Stephen F Altschul
    posted to no-tag by treangen on 2008-02-04 15:52:47 as ***
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