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timflutre modeling [58 articles]

最近 timflutre さんのライブラリに追加された論文の中から タグ modeling. You can also see everyone's modeling.
  • Probabilistic Phylogenetic Inference with Insertions and Deletions
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172.
    by Elena Rivas, Sean R Eddy
    posted to phylogeny molec_evo modeling bioinformatics by timflutre on 2008-10-07 13:44:58 as ** along with 6 people nuin druvus djkt aprasad gjuggler emptyhb
  • Coalescent theory
    (24 March 2000)
    by M Nordborg
    posted to pop_genetics modeling coalescence by timflutre on 2008-09-14 19:05:42 as *****
  • Gene genealogies and the coalescent process
    Oxford Survey in Evolutionary Biology, Vol. 7 (1991), pp. 1-44.
    by RR Hudson
    edited by D Futuyama, J Antonovics
    posted to review modeling coalescence by timflutre on 2008-09-13 09:49:47 as *****
  • Deleterious background selection with recombination.
    Genetics, Vol. 141, No. 4. (December 1995), pp. 1605-1617.
    by RR Hudson, NL Kaplan
    posted to modeling coalescence by timflutre on 2008-09-12 18:05:27 as **
  • The genealogy of samples in models with selection.
    Genetics, Vol. 145, No. 2. (February 1997), pp. 519-534.
    by C Neuhauser, SM Krone
    posted to modeling coalescence by timflutre on 2008-09-12 18:03:53 as **
  • Ancestral inference from samples of DNA sequences with recombination.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 3, No. 4. (1996), pp. 479-502.
    by RC Griffiths, P Marjoram
    posted to modeling coalescence by timflutre on 2008-09-12 18:03:02 as **
  • Structured coalescent processes on different time scales.
    Genetics, Vol. 146, No. 4. (August 1997), pp. 1501-1514.
    by M Nordborg
    posted to modeling coalescence by timflutre on 2008-09-12 18:02:12 as **
  • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations.
    Genetics, Vol. 129, No. 2. (October 1991), pp. 555-562.
    by M Slatkin, RR Hudson
    posted to modeling coalescence by timflutre on 2008-09-12 17:59:59 as **
  • The coalescent
    Stochast. Proc. App., Vol. 13 (1982), pp. 235-248.
    by JFC Kingman
    posted to pop_genetics modeling coalescence by timflutre on 2008-09-12 17:58:50 as **
  • The population dynamics of transposable elements
    Genetical research, Vol. 42, No. 1. (1983), pp. 1-27.
    by B Charlesworth, D Charlesworth
    posted to te pop_genetics modeling by timflutre on 2008-09-12 17:29:25 as *****
  • Models of molecular evolution and phylogeny.
    Genome research, Vol. 8, No. 12. (December 1998), pp. 1233-1244.
    by P Liò, N Goldman
    posted to modeling molec_evo phylogeny by timflutre on 2008-08-08 16:40:30 as ** along with 1 person hdopazo
  • notes Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    Journal of Molecular Evolution, Vol. 22, No. 2. (1 October 1985), pp. 160-174.
    by Masami Hasegawa, Hirohisa Kishino, Taka-Aki Yano
    posted to modeling molec_evo by timflutre on 2008-03-06 14:12:28 as **
  • What is Bayesian statistics?
    Nat Biotech, Vol. 22, No. 9. (2004), pp. 1177-1178.
    by Sean R Eddy
    posted to modeling stats by timflutre on 2008-02-29 09:38:50 as ** along with 2 people Yanno abbie_riner
  • What is a hidden Markov model?
    Nat Biotechnol, Vol. 22, No. 10. (October 2004), pp. 1315-1316.
    by SR Eddy
    posted to modeling by timflutre on 2008-02-29 09:35:20 as ** along with 6 people and 1 group brian aprasad indigoviolet berthoums mailund dullhunk EisenLab
  • Transposable element number in mixed mating populations.
    Genet Res, Vol. 77, No. 3. (June 2001), pp. 261-275.
    by MT Morgan
    posted to modeling te by timflutre on 2008-01-29 16:00:50 as ** along with 1 person balicea
  • La théorie de la relativité d'échelle: réflexions pour une application à l'halieutique
    (June 2000), pp. 41-54.
    by Laurent Nottale
    edited by IRD Editions
    posted to ecology misc modeling by timflutre on 2007-12-04 16:51:04 as **
  • notes Evolutionary consequences of niche construction and their implications for ecology.
    Proc Natl Acad Sci U S A, Vol. 96, No. 18. (31 August 1999), pp. 10242-10247.
    by KN Laland, FJ Odling-Smee, MW Feldman
    posted to ecology modeling pop_genetics by timflutre on 2007-11-19 08:39:40 as **
  • A general model for the evolution of recombination.
    Genet Res, Vol. 65, No. 2. (April 1995), pp. 123-145.
    by NH Barton
    posted to modeling pop_genetics recombination by timflutre on 2007-10-01 09:30:17 as **
  • Structuration des génomes par sélection indirecte de la variabilité mutationnelle, une approche de modélisation et de simulation.
    (2006)
    by C Knibbe
    posted to genomics modeling pop_genetics thesis by timflutre on 2007-09-27 20:54:16 as **
  • Genetic and nongenetic bases for the L-shaped distribution of quantitative trait loci effects.
    Genetics, Vol. 157, No. 4. (April 2001), pp. 1773-1787.
    by B Bost, D de Vienne, F Hospital, L Moreau, C Dillmann
    posted to modeling by timflutre on 2007-09-19 14:52:38 as ** along with 1 person bedo
  • Origins of the Coalescent: 1974-1982
    Genetics, Vol. 156, No. 4. (1 December 2000), pp. 1461-1463.
    by JFC Kingman
    posted to coalescence modeling pop_genetics by timflutre on 2007-07-24 01:13:19 as ** along with 1 person pradiptaray
  • Transposon dynamics and the breeding system
    Genetica, Vol. 107, No. 1. (26 December 1999), pp. 139-148.
    by Stephen Wright, Daniel Schoen
    posted to modeling te by timflutre on 2007-07-21 13:42:36 as **
  • TESD: a transposable element dynamics simulation environment
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2702-2703.
    by Deceliere, Gregory, Letrillard, Yann, Charles, Sandrine, Biemont, Christian
    posted to modeling te by timflutre on 2007-07-21 13:31:44 as **
  • Models of stochastic gene expression
    Physics of Life Reviews, Vol. 2, No. 2. (June 2005), pp. 157-175.
    by Johan Paulsson
    posted to modeling networks gene_expr by timflutre on 2007-06-18 10:16:37 as ** along with 3 people sharatjv margaritis dylanwalker
  • Summing up the noise in gene networks.
    Nature, Vol. 427, No. 6973. (29 January 2004), pp. 415-418.
    by J Paulsson
    posted to modeling networks gene_expr by timflutre on 2007-06-18 10:08:13 as ** along with 7 people bayesian balabu jiyu mhucka margaritis marcio dylanwalker
  • Exact Stochastic Simulation of Coupled Chemical Reactions
    The Journal of Physical Chemistry, Vol. 81, No. 25. (1977), pp. 2340-2361.
    by DT Gillespie
    posted to modeling by timflutre on 2007-06-15 08:38:32 as **
  • Intrinsic noise in gene regulatory networks.
    Proc Natl Acad Sci U S A, Vol. 98, No. 15. (17 July 2001), pp. 8614-8619.
    by M Thattai, A van Oudenaarden
    posted to modeling gene_expr by timflutre on 2007-06-14 15:15:00 as ** along with 3 people bayesian margaritis jjray
  • Adaptive evolution of social traits: origin, trajectories, and correlations of altruism and mobility.
    American Naturalist, Vol. 165, No. 2. (February 2005), pp. 206-224.
    by Jf Le Galliard, R Ferrière, U Dieckmann
    posted to behaviour modeling networks by timflutre on 2007-05-31 21:31:48 as **
  • The adaptive dynamics of altruism in spatially heterogeneous populations.
    Evolution Int J Org Evolution, Vol. 57, No. 1. (January 2003), pp. 1-17.
    by JF Le Galliard, R Ferrière, U Dieckmann
    posted to behaviour modeling networks by timflutre on 2007-05-31 18:46:26 as **
  • Simple mathematical models with very complicated dynamics.
    Nature, Vol. 261, No. 5560. (10 June 1976), pp. 459-467.
    by RM May
    posted to chaos ecology modeling by timflutre on 2007-04-02 17:44:03 as **
  • Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e15.
    by Stefano Ciliberti, Olivier C Martin, Andreas Wagner
    posted to modeling networks robustness by timflutre on 2007-02-26 20:41:30 as ** along with 15 people and 5 groups eldan ccots indigoviolet emilyhare malcook entropy nickluscombe aswin kengg dolhuis grahamc shigepong kynn carneiro phoenixzxl EisenLab EBI-regulation SNE ParkinsonLab_at_MaRS Plantandetc
  • A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2883-2890.
    by Kuang-Chi Chen, Tse-Yi Wang, Huei-Hun Tseng, Chi-Ying F Huang, Cheng-Yan Kao
    posted to networks modeling cell_cycle by timflutre on 2007-02-07 11:54:49 as **
  • Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences
    Journal of Theoretical Biology, Vol. 244, No. 4. (21 February 2007), pp. 621-630.
    by Carole Knibbe, Olivier Mazet, Fabien Chaudier, Jean-Michel Fayard, Guillaume Beslon
    posted to genomics modeling networks by timflutre on 2007-01-30 14:40:22 as ** along with 1 person aprasad
  • Smoothness within ruggedness: the role of neutrality in adaptation.
    Proc Natl Acad Sci U S A, Vol. 93, No. 1. (9 January 1996), pp. 397-401.
    by MA Huynen, PF Stadler, W Fontana
    posted to modeling pop_genetics quasispecies by timflutre on 2007-01-25 22:36:17 as ** along with 2 people nsamways CareyNadell
  • Solution of the quasispecies model for an arbitrary gene network.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 70, No. 2 Pt 1. (August 2004)
    by E Tannenbaum, EI Shakhnovich
    posted to quasispecies networks modeling by timflutre on 2007-01-25 22:32:36 as **
  • The application of statistical physics to evolutionary biology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 27. (5 July 2005), pp. 9541-9546.
    by G Sella, AE Hirsh
    posted to modeling pop_genetics stat_phy theor_evo_bio by timflutre on 2007-01-25 22:29:58 as ** along with 3 people and 2 groups stevanspringer marimo bpcusack MathBio FAB-lab
  • Stochastic gene expression in fluctuating environments.
    Genetics, Vol. 167, No. 1. (May 2004), pp. 523-530.
    by M Thattai, A van Oudenaarden
    posted to gene_expr modeling by timflutre on 2007-01-17 10:28:40 as ** along with 6 people rklancer jjray balabu dbikard mhucka margaritis
  • Control, exploitation and tolerance of intracellular noise
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 231-237.
    by Christopher V Rao, Denise M Wolf, Adam P Arkin
    posted to modeling gene_expr by timflutre on 2007-01-17 10:06:56 as ** along with 8 people and 1 group rklancer sjplimp bayesian shivakumar3_14 cudmore mhucka kfm9876 tvdbulck APprecision
  • Reverse engineering of biological complexity.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669.
    by ME Csete, JC Doyle
    posted to complexity modeling networks by timflutre on 2007-01-16 19:10:14 as ** along with 17 people and 6 groups camster snuppepuppan barry monod lyongu wnpx ddahlem dullhunk adepace javierFellow livingthingdan OriginalLurch anatiferous dbilar jrbanga edvin bayesian dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab
  • Genetic algorithm-based model of evolutionary dynamics of class II transposable elements.
    Journal of Theoretical Biology, Vol. 213, No. 1. (7 November 2001), pp. 21-30.
    by H Quesneville, D Anxolabéhère
    posted to te modeling by timflutre on 2007-01-15 12:30:51 as ** along with 1 person urgi
  • Modeling gene and genome duplications in eukaryotes.
    Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5454-5459.
    by S Maere, S De Bodt, J Raes, T Casneuf, M Van Montagu, M Kuiper, Y Van de Peer
    posted to duplication genomics modeling by timflutre on 2007-01-11 14:22:28 as ***** along with 6 people and 2 groups imouthesmp ushishir Schmidtc dchughes nirfriedman echinotrix G4ID Genetics-of-Gambling
  • Evolution of multigene families by gene duplication. A haploid model.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 2147-2158.
    by H Tachida, T Kuboyama
    posted to duplication modeling pop_genetics by timflutre on 2007-01-11 14:12:28 as **
  • Simulating evolution by gene duplication.
    Genetics, Vol. 115, No. 1. (January 1987), pp. 207-213.
    by T Ohta
    posted to duplication modeling by timflutre on 2007-01-11 13:45:20 as **
  • On the evolution of multigene families.
    Theor Popul Biol, Vol. 23, No. 2. (April 1983), pp. 216-240.
    by T Ohta
    posted to duplication modeling by timflutre on 2007-01-11 13:42:42 as **
  • Dynamics of transposable elements in metapopulations: a model of P element invasion in Drosophila.
    Theor Popul Biol, Vol. 54, No. 2. (October 1998), pp. 175-193.
    by H Quesneville, D Anxolabéhère
    posted to droso modeling te by timflutre on 2007-01-09 14:14:37 as **
  • Transposable elements in natural populations with a mixture of selected and neutral insertion sites.
    Genetical Research, Vol. 57, No. 2. (April 1991), pp. 127-134.
    by B Charlesworth
    posted to te modeling by timflutre on 2007-01-08 17:22:41 as ***
  • Interspersed repetitive DNA sequences are unlikely to be parasitic.
    J Theor Biol, Vol. 94, No. 2. (21 January 1982), pp. 281-299.
    by JF Brookfield
    posted to te modeling by timflutre on 2007-01-08 16:47:25 as **
  • Evolution and extinction of transposable elements in Mendelian populations.
    Genetics, Vol. 109, No. 2. (February 1985), pp. 459-480.
    by N Kaplan, T Darden, CH Langley
    posted to te modeling by timflutre on 2007-01-08 15:58:50 as ***
  • THE EVOLUTION OF SELF-REGULATED TRANSPOSITION OF TRANSPOSABLE ELEMENTS
    Genetics, Vol. 112, No. 2. (1 February 1986), pp. 359-383.
    by B Charlesworth, CH Langley
    posted to te modeling by timflutre on 2007-01-06 16:40:12 as **
  • TRANSPOSABLE ELEMENTS IN MENDELIAN POPULATIONS. I. A THEORY
    Genetics, Vol. 104, No. 3. (1 July 1983), pp. 457-471.
    by Charles H Langley, John F Brookfield, Norman Kaplan
    posted to te modeling by timflutre on 2007-01-06 16:36:53 as ****
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