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thomaskelder library [86 articles]

最近 thomaskelder さんのライブラリ (優先度順).
  • Pathway databases.
    Ann N Y Acad Sci, Vol. 1020 (May 2004), pp. 77-91.
    by CF Schaefer
    posted to pathwaydatabases pathways by thomaskelder on 2008-05-07 12:23:35 as ***** along with 3 people and 1 group greg cantupaz AlexanderPico spliceml
  • Pathway mapping tools for analysis of high content data.
    Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350.
    by S Ekins, Y Nikolsky, A Bugrim, E Kirillov, T Nikolskaya
    posted to pathwayanalysis pathways pathwaytools by thomaskelder on 2008-05-04 10:38:02 as ***** along with 2 people and 1 group shikin AlexanderPico GeneGo
  • Reconstructing Signal Transduction Pathways: Challenges and Opportunities
    Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 32-50.
    by Arnold J Levine, Wenwei Hu, Zhaohui Feng, German Gil
    posted to pathwayreconstruction pathways by thomaskelder on 2008-05-04 10:33:06 as ***** along with 1 person jyuh
  • SPIKE - a database, visualization and analysis tool of cellular signaling pathways
    BMC Bioinformatics, Vol. 9 (20 February 2008), 110.
    by Ran Elkon, Rita Vesterman, Nira Amit, Igor Ulitsky, Idan Zohar, Mali Weisz, Gilad Mass, Nir Orlev, Giora Sternberg, Ran Blekhman, Jackie Assa, Yosef Shiloh, Ron Shamir
    posted to pathwayanalysis pathways by thomaskelder on 2008-02-26 10:21:29 as ***** along with 4 people jyuh renatomilani maralena AlexanderPico
  • New surveyor tools for charting microbial metabolic maps
    Nature Reviews Microbiology, Vol. 6, No. 2., pp. 156-161.
    by Rainer Breitling, Dennis Vitkup, Michael P Barrett
    posted to metabolic pathway pathwayreconstruction by thomaskelder on 2008-05-04 10:31:42 as **** along with 2 people JeremyZucker ptrobajo
  • An architecture for biological information extraction and representation
    Bioinformatics, Vol. 21, No. 4. (15 February 2005), pp. 430-438.
    by Aditya Vailaya, Peter Bluvas, Robert Kincaid, Allan Kuchinsky, Michael Creech, Annette Adler
    posted to cytoscape textmining by thomaskelder on 2008-02-21 11:47:42 as **** along with 5 people and 1 group irenas eweaver kt t11 kemo dbk-lab
  • Statistical issues in the analysis of Illumina data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Mark Dunning, Nuno B Morais, Andy Lynch, Simon Tavare, Matthew Ritchie
    posted to illumina microarray statistics by thomaskelder on 2008-02-07 08:37:13 as **** along with 7 people and 1 group heliopais neveaire RockHI stajich srp33 jyuh Stew Berkeley Mycology
  • OpenDMAP: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-specific gene expression
    BMC Bioinformatics, Vol. 9 (31 January 2008), 78.
    by Lawrence Hunter, Zhiyong Lu, James Firby, William A Baumgartner, Helen L Johnson, Philip V Ogren, Bretonnel K Cohen
    posted to factoids ontology by thomaskelder on 2008-02-05 11:58:49 as **** along with 4 people and 1 group sobolevnrm jyuh satre yas baker-group
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to wiki by thomaskelder on 2008-05-30 08:31:07 as *** along with 17 people and 1 group jfr yas AlexanderPico dullhunk tharris renatomilani neils chad_davis fpattyn sjc Katje jamselem ChrisEvelo carlk jyuh xingxu rholz microbiology_nijmegen
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
    posted to pathways by thomaskelder on 2008-05-28 19:47:49 as *** along with 10 people tmmurali kuhn cmmorel yas balajis dullhunk jyuh AlexanderPico carlk Borelli
  • A Global Pathway Crosstalk Network
    Bioinformatics (23 April 2008), btn200.
    by Yong Li, Pankaj Agarwal, Dilip Rajagopalan
    posted to networkanalysis pathwayanalysis pathways by thomaskelder on 2008-04-27 12:01:21 as *** along with 6 people maralena bootsy renatomilani AlexanderPico jyuh balicea
  • Circadian clocks: self-assembling oscillators?
    Current Biology, Vol. 13, No. 17. (2 September 2003), pp. R681-R682.
    by Michael H Hastings
    posted to circadian by thomaskelder on 2008-02-08 14:34:56 as ***
  • Building pathway clusters from Random Forests classification using class votes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Herbert Pang, Hongyu Zhao
    posted to pathwayanalysis pathwaystatistics statistics by thomaskelder on 2008-02-07 08:35:19 as *** along with 4 people xtizon jyuh jfr AlexanderPico
  • Integrating biological databases.
    Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345.
    by LD Stein
    posted to databases bioinformatic by thomaskelder on 2008-10-10 15:40:51 as ** along with 6 people and 1 group irenas dullhunk fisherp myui mhucka kynn dbk-lab
  • An in Vivo Map of the Yeast Protein Interactome
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to proteininteraction network by thomaskelder on 2008-10-10 14:16:40 as ** along with 4 people Petersarkies renatomilani zwang balicea
  • A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications.
    Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1043-1055.
    by O Keskin, CJ Tsai, H Wolfson, R Nussinov
    posted to proteininteraction network by thomaskelder on 2008-10-10 14:15:44 as ** along with 6 people baaden bicko chad_davis nickolay henschel ladab
  • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    Nature (28 September 2008)
    by Lyris MF de Godoy, Jesper V Olsen, Jürgen Cox, Michael L Nielsen, Nina C Hubner, Florian Fröhlich, Tobias C Walther, Matthias Mann
    posted to proteomics by thomaskelder on 2008-10-01 08:31:31 as ** along with 2 people and 1 group dullhunk brianb microbiology_nijmegen
  • Search extension transforms Wiki into a relational system: a case for flavonoid metabolite database.
    BioData mining, Vol. 1, No. 1. (17 September 2008)
    by Masanori Arita, Kazuhiro Suwa
    posted to wiki by thomaskelder on 2008-10-01 08:29:06 as ** along with 1 person jyuh
  • The Emerging World of Wikis
    Science, Vol. 320, No. 5881. (6 June 2008), pp. 1289b-1290.
    by James C Hu, Rodolfo Aramayo, Dan Bolser, Tyrrell Conway, Christine G Elsik, Michael Gribskov, Thomas Kelder, Daisuke Kihara, Knight, Alexander R Pico, Deborah A Siegele, Barry L Wanner, Roy D Welch
    posted to wikipathways wiki by thomaskelder on 2008-09-25 09:58:26 as ** along with 15 people and 3 groups ptrobajo AlexanderPico davidmihalcik teachingaging barriot reyez dullhunk jago krisl CUL_Akbar tharris heatherstaines martindale rrbarb ChrisEvelo Global_health_enterprise_architecture Knowledge_Economy_Reform Method_Engineering_Services
  • Distinct gene expression profiles in adult mouse heart following targeted MAP kinase activation
    Physiol. Genomics, Vol. 25, No. 1. (13 March 2006), pp. 50-59.
    by Scherise Mitchell, Asuka Ota, William Foster, Bin Zhang, Zixing Fang, Shilpa Patel, Stanley F Nelson, Steve Horvath, Yibin Wang
    posted to microarray mapk by thomaskelder on 2008-09-19 10:20:07 as **
  • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors.
    Nat Biotechnol, Vol. 20, No. 4. (April 2002), pp. 370-375.
    by B Schoeberl, C Eichler-Jonsson, ED Gilles, G Müller
    posted to pathwaymodeling by thomaskelder on 2008-09-19 10:18:47 as ** along with 4 people tuck sujaikumar lukaswindhager renatomilani
  • Big data: The future of biocuration
    Nature, Vol. 455, No. 7209. (2008), pp. 47-50.
    by Doug Howe, Maria Costanzo, Petra Fey, Takashi Gojobori, Linda Hannick, Winston Hide, David P Hill, Renate Kania, Mary Schaeffer, Susan St Pierre, Simon Twigger, Owen White, Yon
    posted to curation by thomaskelder on 2008-09-19 09:34:15 as ** along with 11 people and 1 group natstreet christoph_steinbeck druvus vobios hpiwowar amarois Zephyrus psique fgibson dullhunk neils Roswell Cancer Crosstalk
  • Exploring the metabolic and genetic control of gene expression on a genomic scale.
    Science, Vol. 278, No. 5338. (24 October 1997), pp. 680-686.
    by JL DeRisi, VR Iyer, PO Brown
    posted to pathwayanalysis microarray by thomaskelder on 2008-09-19 09:02:16 as ** along with 8 people and 3 groups macowell lfriedl lyongu fisherp raiyar incovoma dbenn michaelbarton kdl BUiGEM steinmetzlab
  • Virtues of visualization
    Nature, Vol. 455, No. 7211. (2008), pp. 264-264.
    posted to visualization by thomaskelder on 2008-09-19 08:46:10 as **
  • We the curators
    Nature Methods, Vol. 5, No. 9., pp. 754-755.
    by Allison Doerr
    posted to wikipathways wiki by thomaskelder on 2008-09-10 08:51:23 as **
  • Wikiomics
    Nature, Vol. 455 (September 2008), pp. 22-25.
    by Mitch Waldrop
    posted to wikipathways wiki by thomaskelder on 2008-09-05 11:08:41 as ** along with 1 person fgibson
  • A wiki for the life sciences where authorship matters
    Nat Genet, Vol. 40, No. 9. (2008), pp. 1047-1051.
    by Robert Hoffmann
    posted to wiki by thomaskelder on 2008-09-01 11:38:08 as ** along with 11 people and 1 group jyuh psique pak TomQ kyook druvus AlexanderPico ChrisEvelo dullhunk fgibson reyez ConklinLab
  • PathCase: Pathways Database System
    Bioinformatics (26 August 2008), btn459.
    by B Elliott, M Kirac, A Cakmak, G Yavas, S Mayes, E Cheng, Y Wang, C Gupta, G Ozsoyoglu, ZM Ozsoyoglu
    posted to pathwaydatabases pathwaytools by thomaskelder on 2008-08-27 06:25:28 as ** along with 3 people jyuh aconesa renatomilani
  • Identification of key processes underlying cancer phenotypes using biologic pathway analysis.
    PLoS ONE, Vol. 2, No. 5. (2007)
    by S Efroni, CF Schaefer, KH Buetow
    posted to pathwayanalysis by thomaskelder on 2008-08-25 09:57:46 as ** along with 4 people dragonrez jfr AlexanderPico daed
  • Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges
    Nat Rev Genet, Vol. 9, No. 9. (2008), pp. 678-688.
    by Lincoln D Stein
    posted to wiki by thomaskelder on 2008-08-22 08:18:20 as ** along with 20 people and 4 groups nuin rdiaz bmaust jyuh carolh12 ilya alaninmcr druvus srp33 dullhunk tharris stajich mrochman dansullivanblk neils jandot GustavoLacerda jago fgibson sjcockell Berkeley Mycology Global_health_enterprise_architecture Knowledge_Economy_Reform kpa-resources
  • Use of an enterprise wiki as a research collaboration tool.
    AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2007)
    by BR Desai, RT O'Hara, PS White
    posted to wiki by thomaskelder on 2008-08-14 08:56:32 as **
  • The medical matters wiki: building a library Web site 2.0.
    Medical reference services quarterly, Vol. 27, No. 1. (2008), pp. 21-32.
    by J Robertson, J Burnham, J Li, E Sayed
    posted to wiki by thomaskelder on 2008-08-13 07:21:09 as ** along with 1 person Gaetan
  • An activity theoretic model for information quality change
    First Monday, Vol. 13, No. 4. (2008)
    by B Stvilia, L Gasser
    posted to wiki by thomaskelder on 2008-08-11 10:50:11 as ** along with 2 people and 1 group jod999 aarontaycheehsien Wikipedia
  • In good faith: Wikipedia collaboration and the pursuit of the universal encyclopedia
    (2008)
    by J Reagle
    posted to wiki by thomaskelder on 2008-08-11 10:49:01 as ** along with 2 people and 2 groups aarontaycheehsien krisl Wikipedia Social Web
  • Creating, Destroying, and Restoring Value in Wikipedia
    (2--4 November 2007)
    by Reid Priedhorsky, Jilin Chen, Shyong, Katherine Panciera, Loren Terveen, John Riedl
    posted to wiki by thomaskelder on 2008-08-11 10:47:39 as ** along with 1 person and 1 group nojhan Wikipedia
  • Assessing the Value of Coooperation in Wikipedia
    (23 Feb 2007)
    by Dennis M Wilkinson, Bernardo A Huberman
    posted to wiki by thomaskelder on 2008-08-11 10:44:44 as ** along with 2 people and 2 groups momo54 nojhan Wikipedia ecoo-ce
  • Improving Wikipedia's accuracy: Is edit age a solution?
    J. Am. Soc. Inf. Sci. Technol., Vol. 59, No. 2. (January 2008), pp. 318-330.
    by Brendan Luyt, Aaron C Tay, Hai T Lim, Kian H Cheng
    posted to wiki by thomaskelder on 2008-08-11 10:43:52 as ** along with 2 people and 1 group nojhan aarontaycheehsien Wikipedia
  • Social Rewarding in Wiki Systems – Motivating the Community
    Online Communities and Social Computing (2007), pp. 362-371.
    by Bernhard Hoisl, Wolfgang Aigner, Silvia Miksch
    posted to wiki by thomaskelder on 2008-08-11 10:40:26 as ** along with 15 people and 7 groups jwi5 momo54 krisl brusilovsky rosta_farzan nojhan aarontaycheehsien peterlikarish hudafarhan qili ket yteng2 wozn rbudiu Jillia86 Wikipedia social_navigation Adaptive-Web ecoo-ce Social Web UX research updates ABV2008
  • Measuring Author Contributions to the Wikipedia
    (May 2008)
    by BT Adler, De L Alfaro, I Pye, V Raman
    posted to wiki by thomaskelder on 2008-08-11 10:38:25 as ** along with 1 person and 1 group aarontaycheehsien Wikipedia
  • Internet encyclopaedias go head to head
    Nature, Vol. 438, No. 7070. (14 December 2005), pp. 900-901.
    by Jim Giles
    posted to wiki by thomaskelder on 2008-08-07 10:55:47 as ** along with 19 people and 11 groups ChaTo schaal yas rodrigogferreira alterego harperf martindale ilya Davidps nojhan Luketan rebeccamancy PunkRock aarontaycheehsien jfelipe drakkos69 proborc AlexanderPico ramonovelar GroupLens Wikipedia T_lab STS OpenVanilla BG_translation ReachGrasp localization ColDyn Computational Cognitive Neuroscience Lab LearningTechnologies
  • MassTRIX: mass translator into pathways.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by K Suhre, P Schmitt-Kopplin
    posted to pathwayanalysis by thomaskelder on 2008-08-06 09:39:31 as ** along with 1 person jyuh
  • Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface.
    Amino acids (2 July 2008)
    by Eva Csősz, Bertalan Meskó, László Fésüs
    posted to wiki by thomaskelder on 2008-08-06 09:38:52 as ** along with 2 people druvus Gaetan
  • Proteopedia - a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules
    Genome Biology, Vol. 9 (03 August 2008), R121.
    by Eran Hodis, Jaime Prilusky, Eric Martz, Israel Silman, John Moult, Joel L Sussman
    posted to wiki by thomaskelder on 2008-08-06 09:38:16 as ** along with 5 people druvus dullhunk jyuh barriot joseph_x_zhou
  • The public road to high-quality curated biological pathways.
    Drug discovery today (21 July 2008)
    by Michiel E E Adriaens, Magali Jaillard, Andra Waagmeester, Susan L M L Coort, Alex R R Pico, Chris T A T Evelo
    posted to pathwayanalysis pathways by thomaskelder on 2008-07-28 07:17:43 as ** along with 4 people jfr ptrobajo AlexanderPico jyuh
  • Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.
    Bioinformatics (28 June 2007)
    by Duccio Cavalieri, Cinzia Castagnini, Simona Toti, Karolina Maciag, Thomas Kelder, Luca Gambineri, Samuele Angioli, Piero Dolara
    posted to microarray pathwaystatistics by thomaskelder on 2008-07-23 11:11:34 as ** along with 6 people jyuh tmmurali jfr aviad_work waszak AlexanderPico
  • WikiPathways: Pathway Editing for the People
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e184.
    by Alexander R Pico, Thomas Kelder, Martijn P van Iersel, Kristina Hanspers, Bruce R Conklin, Chris Evelo
    posted to wikipathways by thomaskelder on 2008-07-23 05:49:00 as ** along with 14 people and 2 groups chad_davis jyuh psique ptrobajo cerami AlexanderPico iBartomeus renatomilani ajaymalik jarredmccaffrey laurianw dullhunk amarois tharris ConklinLab behavior_flexibility
  • A Gene Wiki for Community Annotation of Gene Function
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e175.
    by Jon W Huss, Camilo Orozco, James Goodale, Chunlei Wu, Serge Batalov, Tim J Vickers, Faramarz Valafar, Andrew I Su
    posted to wiki by thomaskelder on 2008-07-21 10:12:15 as ** along with 15 people and 2 groups lptolik druvus stajich dullhunk tharris sjc inesdesantiago kintoki zwang ChrisEvelo reyez kristina GMTurner barriot jyuh Berkeley Mycology VisionLab
  • ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.
    BMC bioinformatics, Vol. 9 Suppl 6 (2008)
    by TH Stokes, JT Torrance, H Li, MD Wang
    posted to microarray wiki by thomaskelder on 2008-06-28 09:16:12 as ** along with 5 people jfr lptolik yas jyuh GeeSharpMinor
  • Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
    Nucleic acids research (6 June 2008)
    by Sebastian Oehm, David Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann
    posted to pathwayanalysis by thomaskelder on 2008-06-12 06:54:33 as ** along with 4 people maralena renatomilani jyuh beete
  • PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by H Mi, N Guo, A Kejariwal, PD Thomas
    posted to pathwaydatabase pathways by thomaskelder on 2008-05-28 12:10:11 as ** along with 4 people siebertm bootsy skumagai jyuh
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