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sobolevnrm quasiharmonicmodels [18 articles]

最近 sobolevnrm さんのライブラリに追加された論文の中から タグ quasiharmonicmodels. You can also see everyone's quasiharmonicmodels.
  • Projection Methods for the Analysis of Complex Motions in Macromolecules
    Molecular Simulation, Vol. 23, No. 4. (2000), pp. 275-292.
    by Konrad Hinsen, Gerald R Kneller
    posted to quasiharmonicmodels by sobolevnrm on 2008-10-03 12:32:36 as read
  • Hierarchical organization of eglin c native state dynamics is shaped by competing direct and water-mediated interactions
    Proceedings of the National Academy of Sciences, Vol. 105, No. 31. (2008), pp. 10659-10664.
    by Christopher K Materese, Christa C Goldmon, Garegin A Papoian
    posted to quasiharmonicmodels by sobolevnrm on 2008-09-12 13:00:45 as read
  • Insights into protein flexibility: The relationship between normal modes and conformational change upon protein–protein docking
    Proceedings of the National Academy of Sciences, Vol. 105, No. 30. (2008), pp. 10390-10395.
    by Sara E Dobbins, Victor I Lesk, Michael JE Sternberg
    posted to quasiharmonicmodels protein-proteininteractions by sobolevnrm on 2008-09-04 14:04:28 as read
  • Classical and Quantum Gibbs Free Energies and Phase Behavior of Water Using Simulation and Cell Theory
    Journal of Physical Chemistry B, Vol. 112, No. 32. (2008), pp. 9769-9776.
    by Martin K Stennett, Richard H Henchman
    posted to statisticalmechanics solvation quasiharmonicmodels by sobolevnrm on 2008-09-03 13:35:31 as read
  • Estimation of Subspace Arrangements with Applications in Modeling and Segmenting Mixed Data
    SIAM Review, Vol. 50, No. 3. (2008), pp. 413-458.
    by Yi Ma, Allen Y Yang, Harm Derksen, Robert Fossum
    posted to quasiharmonicmodels mathematics clustering by sobolevnrm on 2008-09-02 12:34:10 as **
  • Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis
    Proteins: Structure, Function, and Bioinformatics (in press)
    by Yifei Kong, Martin Karplus
    posted to quasiharmonicmodels correlatedmutations allostery by sobolevnrm on 2008-09-02 12:34:08 as **
  • Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
    ArXiv Mathematics e-prints (2005)
    by B Nadler, S Lafon, RR Coifman, IG Kevrekidis
    posted to clustering mathematics quasiharmonicmodels by sobolevnrm on 2008-08-23 16:23:22 as read
  • Non-linear independent component analysis with diffusion maps
    Applied and Computational Harmonic Analysis, Vol. 25, No. 2. (2008)
    by Amit Singer, Ronald R Coifman
    posted to clustering mathematics quasiharmonicmodels by sobolevnrm on 2008-08-23 16:23:22 as read
  • notes An Evaluation of Intrinsic Dimensionality Estimators
    IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 17, No. 1. (1995)
    by PJ Verveer, RPW Duin
    posted to clustering mathematics quasiharmonicmodels by sobolevnrm on 2008-08-23 16:23:22 as read
  • Critical evaluation of simple network models of protein dynamics and their comparison with crystallographic B-factors
    Physical Biology, Vol. 5, No. 2. (2008)
    by Reza Soheilifard, Dmitrii E Makarov, Gregory J Rodin
    posted to quasiharmonicmodels by sobolevnrm on 2008-08-23 16:23:21 as read
  • Numerical Methods for Computing Angles Between Linear Subspaces
    Mathematics of Computation, Vol. 27, No. 123. (1973)
    by Ake Bjorck, Gene H Golub
    posted to mathematics quasiharmonicmodels by sobolevnrm on 2008-08-15 13:48:19 as read
  • Updating the principal angle decomposition
    Numerische Mathematik, Vol. 110, No. 1. (2008)
    by Peter Strobach
    posted to mathematics quasiharmonicmodels by sobolevnrm on 2008-08-15 13:48:19 as read
  • MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape
    Nucleic Acids Research, Vol. 35, No. suppl_2. (2007)
    by Joel Franklin, Patrice Koehl, Sebastian Doniach, Marc Delarue
    posted to quasiharmonicmodels software by sobolevnrm on 2008-08-13 21:16:00 as read
  • Multivariate Analysis of Conserved Sequence-Structure Relationships in Kinesins: Coupling of the Active Site and a Tubulin-binding Sub-domain
    Journal of Molecular Biology, Vol. 368, No. 5. (2007), pp. 1231-1248.
    by Barry J Grant, Andrew J Mccammon, Leo SD Caves, Robert A Cross
    posted to bioinformatics clustering quasiharmonicmodels structure by sobolevnrm on 2008-08-06 12:16:37 as read
  • Bio3d: an R package for the comparative analysis of protein structures
    Bioinformatics, Vol. 22, No. 21. (2006), pp. 2695-2696.
    by Barry J Grant, Ana PC Rodrigues, Karim M Elsawy, Andrew J Mccammon, Leo SD Caves
    posted to bioinformatics clustering quasiharmonicmodels structure by sobolevnrm on 2008-08-06 12:16:36 as read
  • Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis
    Biochemistry, Vol. 47, No. 30. (2008), pp. 7782-7784.
    by Hendrik Szurmant, Benjamin G Bobay, Robert A White, Daniel M Sullivan, Richele J Thompson, Terence Hwa, James A Hoch, John Cavanagh
    posted to correlatedmutations nmr quasiharmonicmodels by sobolevnrm on 2008-08-05 12:14:21 as read
  • REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes
    Biophysical Journal, Vol. 95, No. 4. (2008), pp. 1639-1648.
    by Kei Moritsugu, Jeremy C Smith
    posted to multiscale quasiharmonicmodels by sobolevnrm on 2008-08-03 16:29:40 as read
  • Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis
    The Journal of Chemical Physics, Vol. 128, No. 24. (2008)
    by Alexandros Altis, Moritz Otten, Phuong H Nguyen, Rainer Hegger, Gerhard Stock
    posted to clustering freeenergy quasiharmonicmodels by sobolevnrm on 2008-08-02 17:53:53 as read
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