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sobolevnrm database [89 articles]

最近 sobolevnrm さんのライブラリに追加された論文の中から タグ database. You can also see everyone's database.
  • An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence
    Journal of Biomedical Informatics, Vol. 41, No. 5. (2008), pp. 752-765.
    by Satya S Sahoo, Olivier Bodenreider, Joni L Rutter, Karen J Skinner, Amit P Sheth
    posted to ontology database bioinformatics by sobolevnrm on 2008-10-03 12:32:36 as read
  • Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
    Journal of Biomedical Informatics, Vol. 41, No. 5. (2008), pp. 706-716.
    by François Belleau, Marc A Nolin, Nicole Tourigny, Philippe Rigault, Jean Morissette
    posted to ontology database bioinformatics by sobolevnrm on 2008-10-03 12:32:36 as read
  • Interesting Structures: Education and Outreach at the RCSB Protein Data Bank
    PLoS Biology, Vol. 6, No. 5. (1 May 2008), e117.
    by Christine Zardecki
    posted to database structure teaching by sobolevnrm on 2008-07-25 11:50:16 as read along with 1 person and 1 group reyez baker-group
  • Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 379-386.
    by Catherine Kehl, Andrew M Simms, Rudesh D Toofanny, Valerie Daggett
    posted to bioinformatics database molecular_dynamics by sobolevnrm on 2008-07-10 11:58:23 as read along with 1 group baker-group
  • Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 369-377.
    by Andrew M Simms, Rudesh D Toofanny, Catherine Kehl, Noah C Benson, Valerie Daggett
    posted to bioinformatics database molecular_dynamics by sobolevnrm on 2008-07-10 11:56:38 as read along with 1 group baker-group
  • Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 353-368.
    by David A Beck, Amanda L Jonsson, Dustin R Schaeffer, Kathryn A Scott, Ryan Day, Rudesh D Toofanny, Darwin O Alonso, Valerie Daggett
    posted to bioinformatics database molecular_dynamics protein_folding by sobolevnrm on 2008-07-10 11:55:38 as read along with 1 group baker-group
  • PDBML: the representation of archival macromolecular structure data in XML
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 988-992.
    by Westbrook John, Ito Nobutoshi, Nakamura Haruki, Henrick Kim, M Berman
    posted to bioinformatics database structure by sobolevnrm on 2008-05-05 21:23:40 as read along with 2 people and 1 group neils chad_davis baker-group
  • CHARMM-GUI: A web-based graphical user interface for CHARMM
    Journal of Computational Chemistry (in press)
    by S Jo, T Kim, VG Iyer, W Im
    posted to database electrostatics molecular_simulation software by sobolevnrm on 2008-04-28 11:28:35 as read along with 1 group baker-group
  • STRALCP structure alignment-based clustering of proteins
    Nucl. Acids Res., Vol. 35, No. 22. (3 December 2007), e150.
    by Adam Zemla, Brian Geisbrecht, Jason Smith, Marisa Lam, Bonnie Kirkpatrick, Mark Wagner, Tom Slezak, Carol E Zhou
    posted to bioinformatics database structure by sobolevnrm on 2008-02-09 23:18:39 as read along with 1 group baker-group
  • The caCORE Software Development Kit: streamlining construction of interoperable biomedical information services.
    BMC Med Inform Decis Mak, Vol. 6 (2006)
    by J Phillips, R Chilukuri, G Fragoso, D Warzel, PA Covitz
    posted to bioinformatics database nanotech sccne by sobolevnrm on 2008-01-31 20:03:33 as read along with 1 person and 1 group jfr baker-group
  • Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines
    Protein Sci, Vol. 17, No. 2. (1 February 2008), pp. 333-341.
    by Wenxu Tong, Ronald J Williams, Ying Wei, Leonel F Murga, Jaeju Ko, Mary J Ondrechen
    posted to bioinformatics database software structure by sobolevnrm on 2008-01-29 12:28:05 as read along with 1 group baker-group
  • STITCH: interaction networks of chemicals and proteins.
    Nucleic Acids Res (15 December 2007)
    by Michael Kuhn, Christian von Mering, Monica Campillos, Lars Juhl J Jensen, Peer Bork
    posted to bioinformatics database protein-ligand_interactions by sobolevnrm on 2008-01-24 12:53:09 as read along with 6 people and 1 group jyuh balicea massivemayhem bootsy larsjuhljensen higueruelo baker-group
  • DrugBank: a knowledgebase for drugs, drug actions and drug targets
    Nucl. Acids Res. (11 December 2007), gkm958.
    by David S Wishart, Craig Knox, An C Guo, Dean Cheng, Savita Shrivastava, Dan Tzur, Bijaya Gautam, Murtaza Hassanali
    posted to bioinformatics database drugdesign by sobolevnrm on 2008-01-03 12:27:55 as read along with 3 people and 1 group jyuh junehlee dullhunk baker-group
  • Mining experimental evidence of molecular function claims from the literature.
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3232-3240.
    by CE Crangle, JM Cherry, EL Hong, A Zbyslaw
    posted to bioinformatics database by sobolevnrm on 2007-12-26 23:21:45 as read along with 2 people and 1 group jyuh balicea baker-group
  • FunSimMat: a comprehensive functional similarity database
    Nucl. Acids Res. (11 October 2007), gkm806.
    by Andreas Schlicker, Mario Albrecht
    posted to bioinformatics database by sobolevnrm on 2007-12-12 12:44:19 as read along with 2 people and 1 group jyuh sgoetz baker-group
  • ChEBI: a database and ontology for chemical entities of biological interest
    Nucleic Acids Research (in press)
    by K Degtyarenko, P de Matos, M Ennis, J Hastings, M Zbinden, A Mcnaught, R Alcántara, M Darsow, M Guedj, M Ashburner
    posted to bioinformatics database ontology by sobolevnrm on 2007-10-30 11:47:06 as read
  • PDB Improvement Starts with Data Deposition
    Science, Vol. 317, No. 5835. (2007), pp. 195-6.
    by RP Joosten, G Vriend
    posted to bioinformatics database structure by sobolevnrm on 2007-07-15 22:17:37 as read along with 1 group baker-group
  • Ontology development for biological systems: immunology
    Bioinformatics, Vol. 23, No. 7. (2007), pp. 913-5.
    by AD Diehl, JA Lee, RH Scheuermann, JA Blake
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:37:08 as read along with 1 group baker-group
  • Sustainable databases
    Nature Cell Biology, Vol. 8, No. 12. (2006)
    posted to database funding by sobolevnrm on 2007-05-25 14:33:55 as ** along with 1 group baker-group
  • BioSimGrid: towards a worldwide repository for biomolecular simulations
    Organic & Biomolecular Chemistry, Vol. 2 (2004), pp. 3219-21.
    by K Tai, S Murdock, B Wu, MH Ng, S Johnston, H Fanghor, SJ Cox, P Jeffreys, JW Essex, MSP Sansom
    posted to database molecular_simulation by sobolevnrm on 2007-05-25 14:23:16 as read along with 1 group baker-group
  • Flexible Structural Neighborhoodâa database of protein structural similarities and alignments
    Nucleic Acids Research, Vol. 34 (2006), pp. D277-D280.
    by Z Li, Y Ye, A Godzik
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:19:26 as read along with 1 group baker-group
  • PPD v1.0âan integrated, web-accessible database of experimentally determined protein pKa values
    Nucleic Acids Research, Vol. 34 (2006), pp. D199-D203.
    by CP Toseland, H Mcsparron, MN Davies, DR Flower
    posted to database electrostatics solvation by sobolevnrm on 2007-05-25 14:19:26 as read along with 1 group baker-group
  • STRING: known and predicted proteinâprotein associations, integrated and transferred across organisms
    Nucleic Acids Research, Vol. 33, No. S1. (2005), pp. D433-D437.
    by C von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, N Jouffre, MA Huynen, P Bork
    posted to bioinformatics database correlatedmutations by sobolevnrm on 2007-05-25 14:18:43 as read along with 1 group baker-group
  • Prolinks: a database of protein functional linkages derived from coevolution
    Genome Biology, Vol. 5, No. 5. (2004)
    by PM Bowers, M Pellegrini, MJ Thompson, J Fierro, TO Yeates, D Eisenberg
    posted to bioinformatics database correlatedmutations by sobolevnrm on 2007-05-25 14:18:43 as read along with 1 group baker-group
  • Pfam: A comprehensive database of protein domain families based on seed alignments
    Proteins, Vol. 28, No. 3. (1997), pp. 405-20.
    by ELL Sonnhammer, SR Eddy, R Durbin
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:18:04 as read along with 1 group baker-group
  • iGNM: a database of protein functional motions based on Gaussian Network Model
    Bioinformatics, Vol. 21, No. 13. (2005), pp. 2978-87.
    by LW Yang, X Liu, CJ Jursa, M Holliman, AJ Rader, HA Karimi, I Bahar
    posted to bioinformatics database quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-05-25 14:18:04 as read along with 1 group baker-group
  • SOAP version 1.2
    (2003)
    by Xml
    posted to database by sobolevnrm on 2007-05-25 14:15:42 as read along with 1 group baker-group
  • The ASTRAL Compendium in 2004
    Nucleic Acids Research, Vol. 32 (2004), pp. D189-D192.
    by JM Chandonia, G Hon, NS Walker, L Lo Conte, P Koehl, M Levitt, SE Brenner
    posted to bioinformatics database structure by sobolevnrm on 2007-05-25 14:15:42 as read along with 1 group baker-group
  • The Gene Ontology (GO) database and informatics resource
    Nucleic Acids Research, Vol. 32 (2004), pp. D258-D261.
    by Gene O Consortium
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:15:20 as read along with 1 group baker-group
  • Chemical Entitites of Biological Interest2005
    (2005)
    by European B Institute
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:15:20 as read along with 1 group baker-group
  • The KEGG resource for deciphering the genome
    Nucleic Acids Research, Vol. 32 (2004), pp. D277-D280.
    by M Kanehisa, S Goto, S Kawashima, Y Okuno, M Hattori
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:15:20 as read along with 1 group baker-group
  • UniProt: the Universal Protein knowledgebase
    Nucleic Acids Research, Vol. 32 (2004), pp. D115-D119.
    by R Apweiler, A Bairoch, CH Wu, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, DA Natale, C O'Donovan, N Redaschi, LSL Yeh
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:15:20 as read along with 1 group baker-group
  • PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids
    Nucleic Acids Research, Vol. 33 (2005), pp. D266-D268.
    by RA Laskowski, VV Chistyakov, JM Thornton
    posted to bioinformatics database structure by sobolevnrm on 2007-05-25 14:15:20 as read along with 1 group baker-group
  • Enzyme Supplement 5
    FEBS Journal, Vol. 264, No. 2. (1999), pp. 610-50.
    by NC Iubmb
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:15:20 as read along with 1 group baker-group
  • Analysis of Catalytic Residues in Enzyme Active Sites
    Journal of Molecular Biology, Vol. 324, No. 1. (2002), pp. 105-21.
    by GJ Bartlett, CT Porter, N Borkakoti, JM Thornton
    posted to bioinformatics database structure by sobolevnrm on 2007-05-25 14:15:19 as read along with 1 group baker-group
  • MSDsite: A database search and retrieval system for the analysis and viewing of bound ligands and active sites
    Proteins, Vol. 58, No. 1. (2004), pp. 190-9.
    by A Golovin, D Dimitropoulos, T Oldfield, A Rachedi, K Henrick
    posted to database structure by sobolevnrm on 2007-05-25 14:15:19 as read along with 1 group baker-group
  • Databases for Protein-Ligand Complexes
    Biological Crystallography Online, Vol. 54, No. 1. (1998), pp. 1178-82.
    by M Hendlich
    posted to database structure by sobolevnrm on 2007-05-25 14:15:19 as read along with 1 group baker-group
  • Inference of Protein Function from Protein Structure
    Structure, Vol. 13, No. 1. (2005), pp. 121-30.
    by D Pal, D Eisenberg
    posted to bioinformatics database structure by sobolevnrm on 2007-05-25 14:15:05 as read along with 1 group baker-group
  • PDBSite: a database of the 3D structure of protein functional sites
    Nucleic Acids Research, Vol. 33 (2005), pp. D183-D187.
    by V Ivanisenko, SS Pintus, DA Grigorovich, NA Kolchanov
    posted to bioinformatics database structure by sobolevnrm on 2007-05-25 14:14:50 as read along with 1 group baker-group
  • PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures
    Nucleic Acids Research, Vol. 33 (2005), pp. D238-D241.
    by JM Shin, DH Cho
    posted to bioinformatics database structure by sobolevnrm on 2007-05-25 14:14:50 as read along with 1 group baker-group
  • Reactome: a knowledgebase of biological pathways
    Nucleic Acids Research, Vol. 33 (2005), pp. D428-D432.
    by Joshi G Tope, M Gillespie, I Vastrik, P D'Eustachio, E Schmidt, B de Bono, B Jassal, GR Gopinath, GR Wu, L Matthews, S Lewis, E Birney, L Stein
    posted to bioinformatics database systems_biology by sobolevnrm on 2007-05-25 14:14:50 as read along with 1 group baker-group
  • Organelle DB: a cross-species database of protein localization and function
    Nucleic Acids Research, Vol. 33 (2005), pp. D598-D604.
    by N Wiwatwattana, A Kumar
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:14:50 as read along with 1 group baker-group
  • SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome
    Bioinformatics, Vol. 20, No. 14. (2004), pp. 2312-4.
    by TJ Dolinsky, PMJ Burgers, K Karplus, NA Baker
    posted to database structure_prediction by sobolevnrm on 2007-05-25 14:13:09 as read along with 1 group baker-group
  • Ligand Depot: a data warehouse for ligands bound to macromolecules
    Bioinformatics, Vol. 20, No. 13. (2004), pp. 2153-5.
    by Z Feng, L Chen, H Maddula, O Akcan, R Oughtred, HM Berman, J Westbrook
    posted to database structure by sobolevnrm on 2007-05-25 14:13:09 as read along with 1 group baker-group
  • The PDBbind Database: Collection of Binding Affinities for Protein-Ligand Complexes with Known Three-Dimensional Structures
    Journal of Medicinal Chemistry, Vol. 47, No. 12. (2004), pp. 2977-80.
    by R Wang, X Fang, Y Lu, S Wang
    posted to database by sobolevnrm on 2007-05-25 14:09:50 as read along with 1 group baker-group
  • RAG: RNA-As-Graphs databaseâconcepts, analysis, and features
    Bioinformatics, Vol. 20, No. 8. (2004), pp. 1285-91.
    by HH Gan, D Fera, J Zorn, N Shiffeldrim, M Tang, U Laserson, N Kim, T Schlick
    posted to bioinformatics database nucleic_acids by sobolevnrm on 2007-05-25 14:09:50 as read along with 1 group baker-group
  • Toward Consistent Assignment of Structural Domains in Proteins
    Journal of Molecular Biology, Vol. 339, No. 3. (2004), pp. 647-78.
    by S Veretnik, PE Bourne, NN Alexandrov, IN Shindyalov
    posted to bioinformatics database by sobolevnrm on 2007-05-25 14:09:50 as read along with 1 group baker-group
  • The Pfam protein families database
    Nucleic Acids Res, Vol. 32, No. 1. (2004), pp. D138-41.
    by A Bateman, L Coin, R Durbin, RD Finn, V Hollich, Griffiths S Jones, A Khanna, M Marshall, S Moxon, EL Sonnhammer, DJ Studholme, C Yeats, SR Eddy
    posted to bioinformatics database by sobolevnrm on 2007-05-25 13:57:26 as read along with 1 group baker-group
  • EMBOSS: the European Molecular Biology Open Software Suite
    Trends Genet, Vol. 16, No. 6. (2000), pp. 276-7.
    by P Rice, I Longden, A Bleasby
    posted to database by sobolevnrm on 2007-05-25 13:55:43 as read along with 1 group baker-group
  • GeneSilico protein structure prediction meta-server
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3305-7.
    by MA Kurowski, JM Bujnicki
    posted to database structure_prediction by sobolevnrm on 2007-05-25 13:55:02 as read along with 1 group baker-group
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