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sobolevnrm library [6275 articles]

最近 sobolevnrm さんのライブラリ .
  • Electrostatic similarity of proteins: Application of three dimensional spherical harmonic decomposition
    The Journal of Chemical Physics, Vol. 129, No. 1. (2008)
    by Maciej Dlugosz, Joanna Trylska
    posted to structure electrostatics bioinformatics by sobolevnrm on 2008-08-08 11:55:35 as read
  • Computer Simulations of Solute Exchange Using Micelles by a Collision-Driven Fusion Process
    Langmuir (in press)
    by Shuangyang Li, Xianren Zhang, Wei Dong, Wenchuan Wang
    posted to biomembranes by sobolevnrm on 2008-08-08 11:55:35 as read
  • Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations
    Journal of Physical Chemistry B, Vol. 112, No. 30. (2008), pp. 9020-9041.
    by In S Joung, Thomas E Cheatham
    posted to solvation molecularsimulation moleculardynamics electrostatics by sobolevnrm on 2008-08-07 12:30:44 as read
  • Electrostatics of B-DNA in NaCl and CaCl2 Solutions: Ion Size, Interionic Correlation, and Solvent Dielectric Saturation Effects
    Journal of Physical Chemistry B, Vol. 112, No. 30. (2008), pp. 8955-8965.
    by Sergei Gavryushov
    posted to nucleicacids electrostatics by sobolevnrm on 2008-08-07 12:30:44 as read
  • Concurrent triple-scale simulation of molecular liquids
    The Journal of Chemical Physics, Vol. 128, No. 11. (2008)
    by Rafael D Buscalioni, Kurt Kremer, Matej Praprotnik
    posted to solvation multiscale by sobolevnrm on 2008-08-07 12:30:44 as read
  • Thermodynamics of charged hard spheres
    The Journal of Chemical Physics, Vol. 70, No. 1. (1979), pp. 361-369.
    by G Stell, B Larsen
    posted to statisticalmechanics electrostatics by sobolevnrm on 2008-08-07 12:30:44 as read
  • Blocking of Carbon Nanotube Based Nanoinjectors by Lipids: A Simulation Study
    Nano Letters (in press)
    by Jayne E Wallace, Mark SP Sansom
    posted to nanotech biomembranes by sobolevnrm on 2008-08-06 12:16:37 as read
  • Allostery and cooperativity revisited
    Protein Sci, Vol. 17, No. 8. (2008), pp. 1295-1307.
    by Qiang Cui, Martin Karplus
    posted to review allostery by sobolevnrm on 2008-08-06 12:16:37 as read
  • Multivariate Analysis of Conserved Sequence-Structure Relationships in Kinesins: Coupling of the Active Site and a Tubulin-binding Sub-domain
    Journal of Molecular Biology, Vol. 368, No. 5. (2007), pp. 1231-1248.
    by Barry J Grant, Andrew J Mccammon, Leo SD Caves, Robert A Cross
    posted to structure quasiharmonicmodels clustering bioinformatics by sobolevnrm on 2008-08-06 12:16:37 as read
  • Bio3d: an R package for the comparative analysis of protein structures
    Bioinformatics, Vol. 22, No. 21. (2006), pp. 2695-2696.
    by Barry J Grant, Ana PC Rodrigues, Karim M Elsawy, Andrew J Mccammon, Leo SD Caves
    posted to structure quasiharmonicmodels clustering bioinformatics by sobolevnrm on 2008-08-06 12:16:36 as read
  • DNA binding to RecD: role of the 1B domain in SF1B helicase activity
    EMBO Journal (in press)
    by K Saikrishnan, SP Griffiths, N Cook, R Court, DB Wigley
    posted to structure helicase by sobolevnrm on 2008-08-06 12:16:36 as read
  • Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis
    Biochemistry, Vol. 47, No. 30. (2008), pp. 7782-7784.
    by Hendrik Szurmant, Benjamin G Bobay, Robert A White, Daniel M Sullivan, Richele J Thompson, Terence Hwa, James A Hoch, John Cavanagh
    posted to quasiharmonicmodels nmr correlatedmutations by sobolevnrm on 2008-08-05 12:14:21 as read
  • Nitric Oxide Physiological Responses and Delivery Mechanisms Probed by Water-Soluble Roussin’s Red Ester and Fe(NO)210 DNIC
    Journal of the American Chemical Society (in press)
    by Yi J Chen, Wei C Ku, Li T Feng, Ming L Tsai, Chung H Hsieh, Wen H Hsu, Wen F Liaw, Chen H Hung, Yu J Chen
    posted to no-tag by sobolevnrm on 2008-08-05 12:14:21 as read
  • Water Inside a Hydrophobic Cavitand Molecule
    Journal of Physical Chemistry B (in press)
    by Jeffrey Ewell, Bruce C Gibb, Steven W Rick
    posted to solvation nonpolar by sobolevnrm on 2008-08-05 12:14:20 as read
  • Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms
    PLoS Comput Biol, Vol. 4, No. 7. (2008)
    by Tammy MK Cheng, Yu E Lu, Michele Vendruscolo, Pietro Lio', Tom L Blundell
    posted to structure graphtheory by sobolevnrm on 2008-08-04 12:15:53 as read
  • Heavy (or large) ions in a fluid in an electric field: The diffusion equation exactly following from the Fokker--Planck equation
    The Journal of Chemical Physics, Vol. 129, No. 4. (2008)
    by Leonardo Ferrari
    posted to statisticalmechanics electrostatics diffusion by sobolevnrm on 2008-08-04 12:15:53 as read
  • The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models
    The Journal of Chemical Physics, Vol. 128, No. 24. (2008), pp. 244115-20.
    by WG Noid, Pu Liu, Yanting Wang, Jhih W Chu, Gary S Ayton, Sergei Izvekov, Hans C Andersen, Gregory A Voth
    posted to multiscale mathematics by sobolevnrm on 2008-08-04 12:15:53 as read
  • A Spectrally Accurate Integral Equation Solver for Molecular Surface Electrostatics
    Computer-Aided Design, 2006. ICCAD '06. IEEE/ACM International Conference on (2006), pp. 899-906.
    by Shih H Kuo, J White
    posted to mathematics electrostatics by sobolevnrm on 2008-08-04 12:15:53 as read
  • Differential Scanning Calorimetry
    Vol. Volume 84 (2008), pp. 115-141.
    by Charles H Spink, John J Correia, Iii
    posted to experimentalmethodology by sobolevnrm on 2008-08-04 12:15:52 as read
  • Optimal data collection for correlated mutation analysis
    Proteins: Structure, Function, and Bioinformatics (in press)
    by H Ashkenazy, R Unger, Y Kliger
    posted to correlatedmutations bioinformatics by sobolevnrm on 2008-08-03 16:29:41 as read
  • Ewald evaluation and Poisson summation formulas for a class of near-Coulombic lattice sums
    Journal of Mathematical Physics, Vol. 21, No. 4. (1980)
    by GL Hall
    posted to mathematics electrostatics by sobolevnrm on 2008-08-03 16:29:40 as read
  • REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes
    Biophysical Journal, Vol. 95, No. 4. (2008), pp. 1639-1648.
    by Kei Moritsugu, Jeremy C Smith
    posted to quasiharmonicmodels multiscale by sobolevnrm on 2008-08-03 16:29:40 as read
  • Kinetics, Statistics, and Energetics of Lipid Membrane Electroporation Studied by Molecular Dynamics Simulations
    Biophysical Journal, Vol. 95, No. 4. (2008), pp. 1837-1850.
    by Rainer A Bockmann, Bert L de Groot, Sergej Kakorin, Eberhard Neumann, Helmut Grubmuller
    posted to solvation electrostatics biomembranes by sobolevnrm on 2008-08-03 16:29:40 as read
  • Molecular Simulations of Lipid-Mediated Protein-Protein Interactions
    Biophysical Journal, Vol. 95, No. 4. (2008), pp. 1851-1865.
    by Frederick, Maddalena Venturoli, Berend Smit
    posted to solvation protein-membraneinteractions multiscale biomembranes by sobolevnrm on 2008-08-03 16:29:40 as read
  • Calculation of Solvation Free Energies of Charged Solutes Using Mixed Cluster/Continuum Models
    Journal of Physical Chemistry B (in press)
    by Vyacheslav S Bryantsev, Mamadou S Diallo, William
    posted to solvation pka multiscale by sobolevnrm on 2008-08-03 16:29:40 as read
  • Experimental Investigation of Electrostatic Particle−Particle Interactions in Optoelectronic Tweezers
    Journal of Physical Chemistry B (in press)
    by Hyundoo Hwang, Jae J Kim, Je K Park
    posted to singlemolecule experimentalmethodology electrostatics by sobolevnrm on 2008-08-03 16:29:39 as read
  • Physiology: Myoglobin's new clothes
    Nature, Vol. 454, No. 7203. (2008), pp. 416-417.
    by Andrew Cossins, Michael Berenbrink
    posted to nitricoxide by sobolevnrm on 2008-08-02 17:53:55 as read
  • Liquid Ordered and Gel Phases of Lipid Bilayers: Fluorescent Probes Reveal Close Fluidity but Different Hydration
    Biophysical Journal, Vol. 95, No. 3. (2008), pp. 1217-1225.
    by Gora M'baye, Yves Mely, Guy Duportail, Andrey S Klymchenko
    posted to solvation electrostatics biomembranes by sobolevnrm on 2008-08-02 17:53:55 as read
  • Solution of boundary value problems with Laplace's equation for ellipsoids and elliptical cylinders
    Journal of Mathematical Physics, Vol. 21, No. 3. (1980)
    by L Eyges
    posted to mathematics electrostatics by sobolevnrm on 2008-08-02 17:53:55 as read
  • Lattice Green's functions for cubic lattices
    Journal of Mathematical Physics, Vol. 21, No. 10. (1980)
    by MA Rashid
    posted to mathematics electrostatics by sobolevnrm on 2008-08-02 17:53:55 as read
  • Electric potential distribution in nanoscale electroosmosis: from molecules to continuum
    Molecular Simulation, Vol. 34, No. 5. (2008), pp. 509-514.
    by M Wang, J Liu, S Chen
    posted to ionchannels electrostatics by sobolevnrm on 2008-08-02 17:53:54 as read
  • Highly Efficient Drug Delivery with Gold Nanoparticle Vectors for in Vivo Photodynamic Therapy of Cancer
    Journal of the American Chemical Society (in press)
    by Yu Cheng, Anna C Samia, Joseph D Meyers, Irene Panagopoulos, Baowei Fei, Clemens Burda
    posted to nanotech cancer by sobolevnrm on 2008-08-02 17:53:54 as read
  • The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models
    The Journal of Chemical Physics, Vol. 128, No. 24. (2008)
    by WG Noid, Jhih W Chu, Gary S Ayton, Vinod Krishna, Sergei Izvekov, Gregory A Voth, Avisek Das, Hans C Andersen
    posted to statisticalmechanics multiscale moleculardynamics by sobolevnrm on 2008-08-02 17:53:54 as read
  • Role of attractive methane-water interactions in the potential of mean force between methane molecules in water
    The Journal of Chemical Physics, Vol. 128, No. 24. (2008)
    by D Asthagiri, Safir Merchant, Lawrence R Pratt
    posted to solvation nonpolar by sobolevnrm on 2008-08-02 17:53:53 as read
  • Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics
    Proceedings of the National Academy of Sciences, Vol. 105, No. 25. (2008), pp. 8625-8630.
    by oyvind Halskau, Raul P Jimenez, Beatriz I Molero, Jarl Underhaug, Victor Muñoz, Aurora Martinez, Jose
    posted to proteinfolding pka electrostatics by sobolevnrm on 2008-08-02 17:53:53 as read
  • RESEARCH FUNDING: Structural Disequilibria in Biomedical Research
    Science, Vol. 321, No. 5889. (2008), pp. 644-645.
    by Michael S Teitelbaum
    posted to funding career by sobolevnrm on 2008-08-02 17:53:53 as read
  • Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis
    The Journal of Chemical Physics, Vol. 128, No. 24. (2008)
    by Alexandros Altis, Moritz Otten, Phuong H Nguyen, Rainer Hegger, Gerhard Stock
    posted to quasiharmonicmodels freeenergy clustering by sobolevnrm on 2008-08-02 17:53:53 as read
  • A hybrid recursion method to robustly ensure convergence efficiencies in the simulated scaling based free energy simulations
    The Journal of Chemical Physics, Vol. 129, No. 3. (2008)
    by Lianqing Zheng, Irina O Carbone, Alexey Lugovskoy, Bernd A Berg, Wei Yang
    posted to molecularsimulation freeenergy enhancedsampling by sobolevnrm on 2008-08-02 17:53:53 as read
  • Developing Polarized Protein-Specific Charges for Protein Dynamics: MD Free Energy Calculation of pKa Shifts for Asp26/Asp20 in Thioredoxin
    Biophysical Journal, Vol. 95, No. 3. (2008), pp. 1080-1088.
    by Changge Ji, Ye Mei, John ZH Zhang
    posted to solvation pka electrostatics by sobolevnrm on 2008-08-02 17:53:53 as read
  • Potential of Mean Force and pKa Profile Calculation for a Lipid Membrane-Exposed Arginine Side Chain
    Journal of Physical Chemistry B (in press)
    by Libo Li, Igor Vorobyov, Toby W Allen
    posted to solvation pka electrostatics biomembranes by sobolevnrm on 2008-08-02 17:53:53 as read
  • pKa of Residue 66 in Staphylococal nuclease. I. Insights from QM/MM Simulations with Conventional Sampling
    Journal of Physical Chemistry B, Vol. 112, No. 28. (2008), pp. 8387-8397.
    by Nilanjan Ghosh, Qiang Cui
    posted to solvation pka molecularsimulation by sobolevnrm on 2008-08-02 17:53:52 as read
  • Salt-Mediated Electrostatics in the Association of TATA Binding Proteins to DNA: A Combined Molecular Mechanics/Poisson-Boltzmann Study
    Biophysical Journal, Vol. 94, No. 12. (2008), pp. 4634-4645.
    by Johan H Bredenberg, Cristina Russo, Marcia O Fenley
    posted to solvation protein-nucleic_acid_interactions electrostatics by sobolevnrm on 2008-08-01 12:50:48 as read
  • Liquid Crystalline Phase Behavior of High Molecular Weight DNA: A Comparative Study of the Influence of Metal Ions of Different Size, Charge and Binding Mode
    Biomacromolecules, Vol. 9, No. 7. (2008), pp. 1860-1869.
    by Neethu Sundaresan, Cherumuttathu H Suresh, Thresia Thomas, TJ Thomas, CKS Pillai
    posted to solvation nucleic_acids electrostatics by sobolevnrm on 2008-08-01 12:50:48 as read
  • On the application of the Arlequin method to the coupling of particle and continuum models
    Computational Mechanics, Vol. 42, No. 4. (2008), pp. 511-530.
    by Paul Bauman, Hachmi Dhia, Nadia Elkhodja, J Oden, Serge Prudhomme
    posted to multiscale mechanics mathematics by sobolevnrm on 2008-08-01 12:50:48 as read
  • Continuum Polarizable Force Field within the Poisson−Boltzmann Framework
    Journal of Physical Chemistry B, Vol. 112, No. 25. (2008), pp. 7675-7688.
    by Yu H Tan, Chunhu Tan, Junmei Wang, Ray Luo
    posted to solvation electrostatics by sobolevnrm on 2008-08-01 12:50:48 as read
  • Application of Mean Field Boundary Potentials in Simulations of Lipid Vesicles
    Journal of Physical Chemistry B, Vol. 112, No. 25. (2008), pp. 7438-7447.
    by Jelger H Risselada, Alan E Mark, Siewert J Marrink
    posted to solvation multiscale biomembranes by sobolevnrm on 2008-08-01 12:50:48 as read
  • Modification of the CHARMM force field for DMPC lipid bilayer
    Journal of Computational Chemistry (in press)
    by CJ Högberg, Nikitin, AP Lyubartsev
    posted to molecularsimulation moleculardynamics biomembranes by sobolevnrm on 2008-08-01 12:50:48 as read
  • Ni(II) and Co(II) Sensing by Escherichia coli RcnR
    Journal of the American Chemical Society, Vol. 130, No. 24. (2008), pp. 7592-7606.
    by Jeffrey S Iwig, Sharon Leitch, Robert W Herbst, Michael J Maroney, Peter T Chivers
    posted to metalloregulation by sobolevnrm on 2008-08-01 12:50:47 as read
  • A Universal Approach to Solvation Modeling
    Accounts of Chemical Research, Vol. 41, No. 6. (2008), pp. 760-768.
    by Christopher J Cramer, Donald G Truhlar
    posted to solvation review by sobolevnrm on 2008-08-01 12:50:47 as read
  • RNA recognition motifs: boring? Not quite
    Current Opinion in Structural Biology, Vol. 18, No. 3. (2008), pp. 290-298.
    by Antoine Cléry, Markus Blatter, Frédéric HT Allain
    posted to review nucleicacids nikr by sobolevnrm on 2008-08-01 12:50:47 as read
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