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siebertm protein [34 articles]

最近 siebertm さんのライブラリに追加された論文の中から タグ protein. You can also see everyone's protein.
  • Network analysis of protein structures identifies functional residues
    Journal of Molecular Biology, Vol. 344, No. 4. (3 December 2004), pp. 1135-1146.
    by G Amitai, A Shemesh, E Sitbon, M Shklar, D Netanely, Venger, S Pietrokovski
    posted to analysis closeness functional network of protein residues structures by siebertm on 2007-05-22 16:06:36 as read along with 7 people and 1 group chrn vavi bicko Einat amitai sriram_s massivemayhem structural_bioinformatics
  • Mining protein family specific residue packing patterns from protein structure graphs
    (2004), pp. 308-315.
    by J Huan, W Wang, D Bandyopadhyay, J Snoeyink, J Prins, A Tropsha
    posted to family function mining patterns prediction protein residue specific structure subgraph tessellation voronoi by siebertm on 2007-05-22 16:04:59 as read
  • Protein function prediction using local 3D templates.
    J Mol Biol (11 July 2005)
    by RA Laskowski, JD Watson, JM Thornton
    posted to 3d function local prediction protein reverse templates by siebertm on 2007-05-22 16:01:24 as read along with 7 people mdimmic shadowman chrn gbart MaggieYe yoonk jwm
  • Evolutionary predictions of binding surfaces and interactions.
    Curr Opin Struct Biol, Vol. 12, No. 1. (February 2002), pp. 21-27.
    by O Lichtarge, ME Sowa
    posted to binding conservation evolution interactions prediction protein surfaces by siebertm on 2007-05-22 14:39:15 as * along with 1 person nickolay
  • Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases.
    J Mol Biol, Vol. 281, No. 5. (4 September 1998), pp. 949-968.
    by JS Fetrow, J Skolnick
    posted to fff forms function functional fuzzy local patterns prediction protein structural by siebertm on 2007-05-22 14:20:44 as read along with 1 person sriram_s
  • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
    Protein Eng, Vol. 11, No. 9. (September 1998), pp. 739-747.
    by IN Shindyalov, PE Bourne
    posted to alignment ce comparison protein structure by siebertm on 2007-05-22 13:53:06 as * along with 8 people and 2 groups pjcite nigham jwm analogAI dgront rabio Inchoate sim82 Radiation_Damage Stressosome
  • Protein structure comparison by alignment of distance matrices.
    J Mol Biol, Vol. 233, No. 1. (5 September 1993), pp. 123-138.
    by L Holm, C Sander
    posted to alignment comparison dali distance matrices protein structure by siebertm on 2007-05-22 13:51:42 as * along with 5 people and 2 groups BragilMassoud ana nigham dgront sim82 structural_bioinformatics Bioinformatics
  • PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by H Mi, N Guo, A Kejariwal, PD Thomas
    posted to database hmm interpro panther protein sequences by siebertm on 2007-05-22 12:24:27 as * along with 4 people bootsy skumagai thomaskelder jyuh
  • Gene3D: modelling protein structure, function and evolution.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Yeats, M Maibaum, R Marsden, M Dibley, D Lee, S Addou, CA Orengo
    posted to database families gene3d interpro protein by siebertm on 2007-05-22 12:22:24 as * along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • The SUPERFAMILY database in 2007: families and functions.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by D Wilson, M Madera, C Vogel, C Chothia, J Gough
    posted to database families hmm interpro protein superfamily by siebertm on 2007-05-22 12:20:02 as * along with 1 person and 1 group Einat structural_bioinformatics
  • The TIGRFAMs database of protein families.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 371-373.
    by DH Haft, JD Selengut, O White
    posted to database families hmm interpro protein tigrfam by siebertm on 2007-05-22 12:16:47 as * along with 2 people Cortel wenhan
  • SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by I Letunic, RR Copley, B Pils, S Pinkert, J Schultz, P Bork
    posted to database domains hmm interpro protein smart by siebertm on 2007-05-22 12:15:21 as * along with 1 person chad_davis
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, T Lassmann, S Moxon, M Marshall, A Khanna, R Durbin, SR Eddy, EL Sonnhammer, A Bateman
    posted to database families hmm interpro pfam protein by siebertm on 2007-05-22 12:13:43 as * along with 10 people gbart dullhunk massivemayhem cjeans lpfernandes pablomendes antonkratz natstreet Lombardo_7 phoenixzxl
  • ProFunc: a server for predicting protein function from 3D structure.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by RA Laskowski, JD Watson, JM Thornton
    posted to function prediction profunc protein sequence server structure by siebertm on 2007-05-20 16:07:14 as read along with 1 person gbart
  • Evolution of protein function, from a structural perspective.
    Curr Opin Chem Biol, Vol. 3, No. 5. (October 1999), pp. 548-556.
    by AE Todd, CA Orengo, JM Thornton
    posted to evolution function protein structure by siebertm on 2007-05-20 14:19:19 as * along with 1 person ucbcjbm
  • The relationship between protein structure and function: a comprehensive survey with application to the yeast genome
    Journal of Molecular Biology, Vol. 288, No. 1. (23 April 1999), pp. 147-164.
    by H Hegyi, M Gerstein
    posted to function protein relationship structure yeast by siebertm on 2007-05-20 14:16:31 as * along with 3 people and 1 group Einat eweaver tny structural_bioinformatics
  • Protein folds and functions.
    Structure, Vol. 6, No. 7. (15 July 1998), pp. 875-884.
    by AC Martin, CA Orengo, EG Hutchinson, S Jones, M Karmirantzou, RA Laskowski, JB Mitchell, C Taroni, JM Thornton
    posted to fold function protein relationship by siebertm on 2007-05-20 14:14:10 as *
  • Protein superfamilies and domain superfolds.
    Nature, Vol. 372, No. 6507. (15 December 1994), pp. 631-634.
    by CA Orengo, DT Jones, JM Thornton
    posted to comparison domain protein structure superfamilies superfolds by siebertm on 2007-05-18 22:27:58 as * along with 1 person Evangelia
  • Identification of homology in protein structure classification
    Nat Struct Mol Biol, Vol. 8, No. 11. (November 2001), pp. 953-957.
    by S Dietmann, L Holm
    posted to classification comparison homology protein structure by siebertm on 2007-05-18 22:26:42 as *
  • The ASTRAL compendium in 2004.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by JM Chandonia, G Hon, NS Walker, L Lo Conte, P Koehl, M Levitt, SE Brenner
    posted to astral database domains protein scop sequences by siebertm on 2007-05-18 20:35:03 as ** along with 6 people chad_davis sriram_s aengisch rabio saunders reyez
  • The ASTRAL compendium for protein structure and sequence analysis.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 254-256.
    by SE Brenner, P Koehl, M Levitt
    posted to astral database domains protein scop sequences by siebertm on 2007-05-18 20:34:08 as ** along with 3 people rabio cjeans gulkur
  • The extended environment of mononuclear metal centers in protein structures.
    Proc Natl Acad Sci U S A, Vol. 94, No. 26. (23 December 1997), pp. 14225-14230.
    by S Karlin, ZY Zhu, KD Karlin
    posted to binding environment metal protein sites structures by siebertm on 2007-05-15 13:32:58 as **
  • Vorolign--fast structural alignment using Voronoi contacts.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by F Birzele, JE Gewehr, G Csaba, R Zimmer
    posted to alignment protein structural structures tessellation vorolign voronoi by siebertm on 2007-05-03 18:05:03 as read along with 3 people bicko chad_davis aengisch
  • The Protein Data Bank.
    Acta Crystallogr D Biol Crystallogr, Vol. 58, No. Pt 6 No 1. (June 2002), pp. 899-907.
    by HM Berman, T Battistuz, TN Bhat, WF Bluhm, PE Bourne, K Burkhardt, Z Feng, GL Gilliland, L Iype, S Jain, P Fagan, J Marvin, D Padilla, V Ravichandran, B Schneider, N Thanki, H Weissig, JD Westbrook, C Zardecki
    posted to database pdb protein structure by siebertm on 2007-04-25 12:40:29 as * along with 1 person granujilla
  • From structure to function: approaches and limitations.
    Nat Struct Biol, Vol. 7 Suppl (November 2000), pp. 991-994.
    by JM Thornton, AE Todd, D Milburn, N Borkakoti, CA Orengo
    posted to analysis function protein structure by siebertm on 2007-04-24 19:30:58 as read along with 2 people ucbcjbm tjimenez
  • SCOP: a structural classification of proteins database for the investigation of sequences and structures.
    J Mol Biol, Vol. 247, No. 4. (7 April 1995), pp. 536-540.
    by AG Murzin, SE Brenner, T Hubbard, C Chothia
    posted to classification database domains protein scop structure by siebertm on 2007-04-23 22:42:45 as read along with 10 people pjcite dimka chrn chad_davis j3xucite sriram_s aengisch massivemayhem cjeans sim82
  • New scoring schemes for protein fold recognition based on Voronoi contacts.
    Bioinformatics, Vol. 14, No. 3. (1998), pp. 295-308.
    by R Zimmer, M Wöhler, R Thiele
    posted to fold protein recognition scheme scoring tessellation voronoi by siebertm on 2007-04-23 16:27:04 as * along with 1 person aengisch
  • Voronoi and Voronoi-related tessellations in studies of protein structure and interaction
    Current Opinion in Structural Biology, Vol. 14, No. 2. (April 2004), pp. 233-241.
    by A Poupon
    posted to analysis protein review structure tessellation voronoi by siebertm on 2007-04-23 15:39:14 as read along with 3 people apaydin aengisch mirzazadeh
  • Voronoi cell: new method for allocation of space among atoms: elimination of avoidable errors in calculation of atomic volume and density
    Journal of Computational Chemistry, Vol. 18, No. 9. (1997), pp. 1113-1123.
    by A Goede, R Preissner, C Frömmel
    posted to analysis protein structure tessellation voronoi by siebertm on 2007-04-19 19:22:45 as *
  • Calculation of protein volumes: an alternative to the Voronoi procedure.
    J Mol Biol, Vol. 161, No. 2. (25 October 1982), pp. 305-322.
    by BJ Gellatly, JL Finney
    posted to analysis protein structure tessellation voronoi by siebertm on 2007-04-19 19:17:29 as * along with 2 people bicko aengisch
  • Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure.
    Bioinformatics, Vol. 18, No. 10. (October 2002), pp. 1365-1373.
    by BJ Mcconkey, V Sobolev, M Edelman
    posted to analysis protein structure tessellation voronoi by siebertm on 2007-04-19 19:07:37 as * along with 3 people and 2 groups barry bicko j3xucite structural_bioinformatics Bioinformatics
  • A procedure for detection and quantitation of cavity volumes proteins. Application to measure the strength of the hydrophobic driving force in protein folding.
    J Biol Chem, Vol. 277, No. 35. (30 August 2002), pp. 31345-31353.
    by S Chakravarty, A Bhinge, R Varadarajan
    posted to analysis protein structure tessellation voronoi by siebertm on 2007-04-19 19:02:57 as * along with 1 person and 2 groups jwm Radiation_Damage Stressosome
  • Accurate calculation of the density of proteins.
    Acta Crystallogr D Biol Crystallogr, Vol. 56, No. Pt 7. (July 2000), pp. 791-794.
    by ML Quillin, BW Matthews
    posted to analysis protein structure tessellation voronoi by siebertm on 2007-04-19 19:01:00 as *
  • The interpretation of protein structures: total volume, group volume distributions and packing density.
    J Mol Biol, Vol. 82, No. 1. (5 January 1974), pp. 1-14.
    by FM Richards
    posted to analysis protein structure tessellation voronoi by siebertm on 2007-04-19 18:19:39 as *
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