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shuns library [94 articles]

最近 shuns さんのライブラリ .
  • Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis
    Physical Review Letters, Vol. 77 (1996), pp. 1905-1908.
    by MM Tirion
    posted to normal-mode by shuns on 2006-05-08 04:48:49 as ** along with 1 person apaydin
  • The PerR transcription factor senses H2O2 by metal-catalysed histidine oxidation
    Nature, Vol. 440, No. 7082., pp. 363-367.
    by Jin-Won Lee, John D Helmann
    posted to enzyme structure by shuns on 2006-03-16 10:18:15 as ** along with 1 person imouthesmp
  • Structural basis for the spectral difference in luciferase bioluminescence
    Nature, Vol. 440, No. 7082., pp. 372-376.
    by Toru Nakatsu, Susumu Ichiyama, Jun Hiratake, Adrian Saldanha, Nobuyuki Kobashi, Kanzo Sakata, Hiroaki Kato
    posted to enzyme structure by shuns on 2006-03-16 10:17:56 as ** along with 1 person y4su0
  • Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis
    Nature, Vol. 440, No. 7082., pp. 368-371.
    by Leah C Blasiak, Frã©dã©ric H Vaillancourt, Christopher T Walsh, Catherine L Drennan
    posted to enzyme structure by shuns on 2006-03-16 10:16:45 as ****
  • Structure of the Hydrophilic Domain of Respiratory Complex I from Thermus thermophilus
    Science, Vol. 311, No. 5766. (10 March 2006), pp. 1430-1436.
    by Leonid A Sazanov, Philip Hinchliffe
    posted to structure by shuns on 2006-03-14 05:40:40 as **
  • Structure and Mechanism of the Lantibiotic Cyclase Involved in Nisin Biosynthesis
    Science, Vol. 311, No. 5766. (10 March 2006), pp. 1464-1467.
    by Bo Li, John P Yu, Joseph S Brunzelle, Gert N Moll, Wilfred A van der Donk, Satish K Nair
    posted to structure by shuns on 2006-03-14 05:40:36 as **
  • Engineering Cooperativity in Biomotor-Protein Assemblies
    Science, Vol. 311, No. 5766. (10 March 2006), pp. 1468-1471.
    by Michael R Diehl, Kechun Zhang, Heun J Lee, David A Tirrell
    posted to motor protein by shuns on 2006-03-14 05:40:28 as ** along with 1 person lingchong
  • An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids.
    J Am Chem Soc, Vol. 128, No. 10. (15 March 2006), pp. 3138-3139.
    by BR Baker, RY Lai, MS Wood, EH Doctor, AJ Heeger, KW Plaxco
    posted to no-tag by shuns on 2006-03-14 04:33:24 as * along with 1 person kengg
  • Protein structural change upon ligand binding: linear response theory.
    Phys Rev Lett, Vol. 94, No. 7. (25 February 2005)
    by M Ikeguchi, J Ueno, M Sato, A Kidera
    posted to no-tag by shuns on 2006-03-07 08:49:31 as ** along with 1 person lna
  • Architecture of Mammalian Fatty Acid Synthase at 4.5 A Resolution
    Science, Vol. 311, No. 5765. (3 March 2006), pp. 1258-1262.
    by Timm Maier, Simon Jenni, Nenad Ban
    posted to structure by shuns on 2006-03-07 00:26:59 as **
  • Architecture of a Fungal Fatty Acid Synthase at 5 A Resolution
    Science, Vol. 311, No. 5765. (3 March 2006), pp. 1263-1267.
    by Simon Jenni, Marc Leibundgut, Timm Maier, Nenad Ban
    posted to structure by shuns on 2006-03-07 00:26:53 as **
  • Ultrafast folding of a computationally designed trp-cage mutant: trp(2)-cage.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 8. (2 March 2006), pp. 3759-3763.
    by MR Bunagan, X Yang, JG Saven, F Gai
    posted to protein-design by shuns on 2006-02-27 08:41:39 as **
  • Can Conformational Change Be Described by Only a Few Normal Modes?
    Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593.
    by Paula Petrone, Vijay S Pande
  • Recapitulation and Design of Protein Binding Peptide Structures and Sequences
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Vanita D Sood, David Baker
  • Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins
    PNAS, Vol. 103, No. 6. (7 February 2006), pp. 1744-1749.
    by Joanna Makowska, Sylwia Rodziewicz-Motowidlo, Katarzyna Baginska, Jorge A Vila, Adam Liwo, Lech Chmurzynski, Harold A Scheraga
    posted to no-tag by shuns on 2006-02-08 05:59:35 as ** along with 2 people sotaro allmensch
  • Autonomous artificial nanomotor powered by sunlight
    PNAS, Vol. 103, No. 5. (31 January 2006), pp. 1178-1183.
    by Vincenzo Balzani, Miguel Clemente-Leon, Alberto Credi, Belen Ferrer, Margherita Venturi, Amar H Flood, Fraser J Stoddart
    posted to chemical motor by shuns on 2006-02-02 13:33:45 as **
  • Computational Design of a Single Amino Acid Sequence that Can Switch between Two Distinct Protein Folds.
    J Am Chem Soc, Vol. 128, No. 4. (1 February 2006), pp. 1154-1161.
  • Design and Evolution of New Catalytic Activity with an Existing Protein Scaffold
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 535-538.
    by Hee-Sung Park, Sung-Hun Nam, Jin K Lee, Chang N Yoon, Bengt Mannervik, Stephen J Benkovic, Hak-Sung Kim
  • Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited
    Nat Chem Biol, Vol. 2, No. 2. (February 2006), pp. 87-94.
    by Brian P English, Wei Min, Antoine M van Oijen, Kang T Lee, Guobin Luo, Hongye Sun, Binny J Cherayil, SC Kou, Sunney X Xie
  • Mechanism of Dihydroneopterin Aldolase: A Molecular Dynamics Study of the Apo Enzyme and Its Product Complex
    Journal of Physical Chemistry, Vol. 110, No. 3. (2006), pp. 1443-1456.
    by Lishan Yao, Honggao Yan, Robert I Cukier
    posted to enzyme ligand-binding mechianism by shuns on 2006-01-24 03:33:26 as **
  • All Electron Quantum Chemical Calculation of the Entire Enzyme System Confirms a Collective Catalytic Device in the Chorismate Mutase Reaction
    Journal of Physical Chemistry, Vol. 110, No. 3. (30 December 2006), pp. 1457-1463.
    by Toyokazu Ishida, Dmitri G Fedorov, Kazuo Kitaura
    posted to enzyme fmo mechianism by shuns on 2006-01-24 03:31:19 as **
  • Knowledge-based design of target-focused libraries using protein-ligand interaction constraints.
    J Med Chem, Vol. 49, No. 2. (26 January 2006), pp. 490-500.
    by Z Deng, C Chuaqui, J Singh
    posted to ligand-binding protein-design by shuns on 2006-01-24 02:25:23 as ** along with 1 person peprovy
  • Computational Design of Heterochiral Peptides against a Helical Target.
    J Am Chem Soc, Vol. 128, No. 3. (25 January 2006), pp. 809-816.
    by Vikas Nanda, William F Degrado
    posted to protein-design by shuns on 2006-01-20 03:33:41 as ****
  • P versus Q: Structural reaction coordinates capture protein folding on smooth landscapes
    PNAS, Vol. 103, No. 3. (17 January 2006), pp. 586-591.
    by Samuel S Cho, Yaakov Levy, Peter G Wolynes
    posted to folding landscape by shuns on 2006-01-19 09:12:29 as *
  • Allosteric control of an ionotropic glutamate receptor with an optical switch
    Nat Chem Biol, Vol. 2, No. 1. (January 2006), pp. 47-52.
    by Matthew Volgraf, Pau Gorostiza, Rika Numano, Richard H Kramer, Ehud Y Isacoff, Dirk Trauner
    posted to protein-design by shuns on 2006-01-17 02:49:43 as **
  • Structural Basis for Double-Stranded RNA Processing by Dicer
    Science, Vol. 311, No. 5758. (13 January 2006), pp. 195-198.
    by Ian J Macrae, Kaihong Zhou, Fei Li, Adrian Repic, Angela N Brooks, Zacheus W Cande, Paul D Adams, Jennifer A Doudna
  • Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes.
    Structure (Camb), Vol. 13, No. 3. (March 2005), pp. 373-380.
    by J Ma
    posted to normal-mode review by shuns on 2006-01-12 03:38:35 as ** along with 3 people higueruelo aqeel simone
  • Coarse-grained normal mode analysis in structural biology
    Current Opinion in Structural Biology, Vol. 15, No. 5. (October 2005), pp. 586-592.
    by Ivet Bahar, Aj Rader
  • Packing defects as selectivity switches for drug-based protein inhibitors
    PNAS, Vol. 103, No. 2. (10 January 2006), pp. 323-328.
    by Ariel Fernandez, Ridgway Scott, Stephen R Berry
    posted to docking drug inhibitor by shuns on 2006-01-11 03:39:45 as ** along with 1 person tjimenez
  • From The Cover: A simple physical model for scaling in protein-protein interaction networks
    PNAS, Vol. 103, No. 2. (10 January 2006), pp. 311-316.
    by Eric J Deeds, Orr Ashenberg, Eugene I Shakhnovich
  • Controlled uncoupling and recoupling of proton pumping in cytochrome c oxidase
    PNAS, Vol. 103, No. 2. (10 January 2006), pp. 317-322.
    by Gisela Branden, Ashtamurthy S Pawate, Robert B Gennis, Peter Brzezinski
    posted to proton-pump by shuns on 2006-01-11 03:39:08 as **
  • Primary steps of the photoactive yellow protein: Isolated chromophore dynamics and protein directed function
    PNAS, Vol. 103, No. 2. (10 January 2006), pp. 258-262.
    by I-Ren Lee, Wonchul Lee, Ahmed H Zewail
    posted to no-tag by shuns on 2006-01-11 03:38:43 as **
  • Analysis of the kinesin superfamily: insights into structure and function.
    Trends Cell Biol, Vol. 15, No. 9. (September 2005), pp. 467-476.
    by H Miki, Y Okada, N Hirokawa
    posted to kinesin review by shuns on 2006-01-10 08:37:38 as * along with 1 person jarasch
  • Ribosome exit tunnel can entropically stabilize alpha-helices
    PNAS, Vol. 102, No. 52. (27 December 2005), pp. 18956-18961.
    by Guy Ziv, Gilad Haran, D Thirumalai
    posted to no-tag by shuns on 2006-01-04 02:42:10 as ** along with 1 person sikorski
  • Correlation between evolutionary structural development and protein folding.
    Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 18950-18955.
    by C Nagao, TP Terada, T Yomo, M Sasai
  • Two independent mechanical events in the interaction cycle of skeletal muscle myosin with actin
    PNAS, Vol. 103, No. 1. (3 January 2006), pp. 87-92.
    posted to myosin by shuns on 2006-01-04 02:37:12 as **
  • Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state.
    Proc Natl Acad Sci U S A (14 December 2005)
    by Dror Tobi, Ivet Bahar
    posted to bound-unbound by shuns on 2006-01-04 02:36:45 as ** along with 3 people apaydin aqeel insectopalo
  • Specificity versus stability in computational protein design.
    Proc Natl Acad Sci U S A, Vol. 102, No. 36. (6 September 2005), pp. 12724-12729.
    by DN Bolon, RA Grant, TA Baker, RT Sauer
    posted to protein-design by shuns on 2006-01-03 06:10:40 as **
  • A search algorithm for fixed-composition protein design.
    J Comput Chem, Vol. 27, No. 3. (27 December 2005), pp. 375-378.
    by Geoffrey K K Hom, Stephen L L Mayo
    posted to protein-design by shuns on 2005-12-30 13:01:33 as ****
  • HMC algorithm with multiple time scale integration and mass preconditioning
    Computer Physics Communications, Vol. 174, No. 2. (15 January 2006), pp. 87-98.
    posted to method technical by shuns on 2005-12-30 06:49:38 as *
  • Generalized-ensemble algorithms for molecular simulations of biopolymers.
    Biopolymers, Vol. 60, No. 2. (2001), pp. 96-123.
  • Fragment molecular orbital method: an approximate computational method for large molecules
    Chemical Physics Letters, Vol. 313, No. 3. (12 November 1999), pp. 701-706.
    by K Kitaura, E Ikeo, T Asada, T Nakano, M Uebayasi
    posted to fmo method by shuns on 2005-12-30 06:41:17 as **
  • Fragment molecular orbital method: application to molecular dynamics simulation, 'ab initio FMO-MD'
    Chemical Physics Letters, Vol. 372, No. 3. (29 April 2003), pp. 342-347.
    posted to fmo method molecular-dynamics by shuns on 2005-12-30 06:40:49 as **
  • Model for kinetics of wild-type and mutant kinesins.
    Biosystems (22 December 2005)
    by Ping Xie, Shuo-Xing X Dou, Peng-Ye Y Wang
  • Structural genomics analysis of alternative splicing and application to isoform structure modeling.
    Proc Natl Acad Sci U S A (14 December 2005)
    by Peng Wang, Bo Yan, Jun-Tao T Guo, Chindo Hicks, Ying Xu
  • Plasticity of enzyme active sites
    Trends in Biochemical Sciences, Vol. 27, No. 8. (1 August 2002), pp. 419-426.
    by Annabel E Todd, Christine A Orengo, Janet M Thornton
    posted to no-tag by shuns on 2005-12-22 06:12:20 as ** along with 1 person tny
  • Interaction of kinesin motors, microtubules, and MAPs
    Journal of Muscle Research and Cell Motility, Vol. 27, No. 2. (17 February 2006), pp. 125-137.
    by X Mar, , R Mulle, , W Mandelko, -M, R Hoenge, , W Mandelko,
  • Structural analysis of the ZEN-4/CeMKLP1 motor domain and its interaction with microtubules.
    J Struct Biol (14 December 2005)
    by Dilem Hizlan, Masanori Mishima, Peter Tittmann, Heinz Gross, Michael Glotzer, Andreas Hoenger
    posted to kinesin structure by shuns on 2005-12-22 02:54:21 as **
  • Kinesin's moonwalk.
    Curr Opin Cell Biol (14 December 2005)
    by Nicholas J J Carter, Robert A A Cross
  • The tethered motor domain of a kinesin-microtubule complex catalyzes reversible synthesis of bound ATP.
    Proc Natl Acad Sci U S A, Vol. 102, No. 51. (20 December 2005), pp. 18338-18343.
    by DD Hackney
    posted to kinesin reversibility by shuns on 2005-12-22 02:51:52 as ****
  • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/shuns

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