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shivaram library [50 articles]

最近 shivaram さんのライブラリ .
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L Mcdaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A Dasilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP Mckenna, J Chant, JM Rothberg
    posted to two_hybrid by shivaram on 2005-10-11 06:01:07 as ** along with 12 people and 2 groups carlk csanford antonkratz dragonrez lfriedl nuke2005 lyongu sesejun maryee xico memming eukfn kdl WetBiology
  • A map of the interactome network of the metazoan C. elegans.
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 540-543.
    by S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, JD Han, A Chesneau, T Hao, DS Goldberg, N Li, M Martinez, JF Rual, P Lamesch, L Xu, M Tewari, SL Wong, LV Zhang, GF Berriz, L Jacotot, P Vaglio, J Reboul, T Hirozane-Kishikawa, Q Li, HW Gabel, A Elewa, B Baumgartner, DJ Rose, H Yu, S Bosak, R Sequerra, A Fraser, SE Mango, WM Saxton, S Strome, S Van Den Heuvel, F Piano, J Vandenhaute, C Sardet, M Gerstein, L Doucette-Stamm, KC Gunsalus, JW Harper, ME Cusick, FP Roth, DE Hill, M Vidal
    posted to two_hybrid by shivaram on 2005-10-11 06:00:17 as ** along with 7 people and 1 group ksiek carlk lfriedl nuke2005 lyongu sesejun Chue kdl
  • The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes.
    Mol Biol Evol, Vol. 18, No. 7. (July 2001), pp. 1283-1292.
    by A Wagner
    posted to protein_result by shivaram on 2005-10-11 05:56:17 as ** along with 4 people dragonrez gurkanbebek koller gcalda
  • Evolutionary conservation of motif constituents in the yeast protein interaction network.
    Nat Genet, Vol. 35, No. 2. (October 2003), pp. 176-179.
    by S Wuchty, ZN Oltvai, AL Barabási
    posted to protein_result by shivaram on 2005-10-11 05:01:30 as ** along with 2 people lyongu niallhaslam
  • Assessing experimentally derived interactions in a small world.
    Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4372-4376.
    by DS Goldberg, FP Roth
    posted to protein_result by shivaram on 2005-10-11 04:59:23 as ** along with 7 people ksiek carlk dragonrez bluto grahamc iris_2001 jmattax
  • DIP: the database of interacting proteins.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 289-291.
    by I Xenarios, DW Rice, L Salwinski, MK Baron, EM Marcotte, D Eisenberg
    posted to protein_dataset by shivaram on 2005-10-11 02:48:15 as ** along with 8 people and 2 groups dragonrez imouthesmp lfriedl bigbossman bundschu grahamc ichbins81 lpfernandes kdl generif_paper
  • Biomolecular interaction network database.
    Brief Bioinform, Vol. 6, No. 2. (June 2005), pp. 194-198.
    by D Gilbert
    posted to protein_dataset by shivaram on 2005-10-11 02:47:08 as ** along with 1 person and 2 groups dagmar dIEMoSIRIS compneur
  • Error and attack tolerance of complex networks
    Nature, Vol. 406, No. 6794. (27 July 2000), pp. 378-382.
    by Reka Albert, Hawoong Jeong, Albert-Laszlo Barabasi
    posted to protein_structure by shivaram on 2005-10-10 20:53:34 as ** along with 14 people and 2 groups dylanwalker tjpp korakot alexisgallagher cmmorel balicea yoh mmt jaspervoskuilen timflutre thehajime karfunkel Evangelia stefanoallesina Philosophy_of_Information Blog_and_Wiki_Research
  • The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to protein_structure by shivaram on 2005-10-10 20:51:47 as ** along with 21 people and 2 groups shikin camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina dbk-lab kdl
  • Transitive functional annotation by shortest-path analysis of gene expression data.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12783-12788.
    by X Zhou, MC Kao, WH Wong
    posted to protein_function by shivaram on 2005-10-10 20:46:11 as ** along with 1 person and 1 group lfriedl kdl
  • Whole-genome annotation by using evidence integration in functional-linkage networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2888-2893.
    by U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif
    posted to protein_function by shivaram on 2005-10-10 20:45:13 as ** along with 3 people and 1 group carlk lfriedl nedwards kdl
  • Global protein function prediction from protein-protein interaction networks.
    Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 697-700.
    by A Vazquez, A Flammini, A Maritan, A Vespignani
    posted to protein_function by shivaram on 2005-10-10 20:44:38 as ** along with 6 people carlk eweaver gcalda grahamc iris_2001 maralena
  • Assessment of prediction accuracy of protein function from protein--protein interaction data.
    Yeast, Vol. 18, No. 6. (April 2001), pp. 523-531.
    by H Hishigaki, K Nakai, T Ono, A Tanigami, T Takagi
    posted to protein_function by shivaram on 2005-10-10 20:43:31 as ** along with 2 people carlk jiny
  • A combined algorithm for genome-wide prediction of protein function.
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86.
    by EM Marcotte, M Pellegrini, MJ Thompson, TO Yeates, D Eisenberg
    posted to protein_function by shivaram on 2005-10-10 20:41:41 as ** along with 4 people and 1 group carlk lfriedl ruvido cjeans kdl
  • A "two-step" synchronous sliding method of sub-nanosecond pulses for ultra-wideband (UWB) radio
    Communications, Circuits and Systems and West Sino Expositions, IEEE 2002 International Conference on, Vol. 1 (2002), pp. 142-145 vol.1.
    by Hongyan Bing, Xiangdong Hou, Xiaobo Yang, Tao Yang, Can Li
    posted to uwb_fpga by shivaram on 2005-09-27 04:05:54 as **
  • A novel genetic system to detect protein-protein interactions.
    Nature, Vol. 340, No. 6230. (20 July 1989), pp. 245-246.
    by S Fields, O Song
    posted to two_hybrid by shivaram on 2005-09-13 18:27:50 as ** along with 7 people carlk caldavis helenc gurkanbebek Dualsystems grahamc selrac
  • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183.
    by Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, P Taylor, K Bennett, K Boutilier, L Yang, C Wolting, I Donaldson, S Schandorff, J Shewnarane, M Vo, J Taggart, M Goudreault, B Muskat, C Alfarano, D Dewar, Z Lin, K Michalickova, AR Willems, H Sassi, PA Nielsen, KJ Rasmussen, JR Andersen, LE Johansen, LH Hansen, H Jespersen, A Podtelejnikov, E Nielsen, J Crawford, V Poulsen, BD Sørensen, J Matthiesen, RC Hendrickson, F Gleeson, T Pawson, MF Moran, D Durocher, M Mann, CW Hogue, D Figeys, M Tyers
    posted to affinity_preipitation by shivaram on 2005-09-13 18:04:20 as ** along with 9 people and 3 groups iris_2001 okarsligil bicko lfriedl chad_davis lyongu gcalda raiyar helenamistry kdl Bioinformatics steinmetzlab
  • A steady state model for graph power laws
    (30 Mar 2002)
    by David Eppstein, Joseph Wang
    posted to graph_model by shivaram on 2005-09-06 05:52:56 as **
  • The GRID: the General Repository for Interaction Datasets.
    Genome Biol, Vol. 4, No. 3. (2003)
    by BJ Breitkreutz, C Stark, M Tyers
    posted to no-tag by shivaram on 2005-09-05 03:57:21 as ** along with 1 person grahamc
  • Scientific collaboration networks. I. Network construction and fundamental results.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 64, No. 1 Pt 2. (July 2001)
    by ME Newman
    posted to betweenness_centrality by shivaram on 2005-08-26 06:37:05 as ** along with 6 people and 3 groups korakot PatrickD mrm rasca cmmorel fwkroon Philosophy_of_Information Blog_and_Wiki_Research Wikipedia
  • Hierarchical organization in complex networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 67, No. 2 Pt 2. (February 2003)
    by E Ravasz, AL Barabási
    posted to graph_model by shivaram on 2005-08-24 03:25:12 as ** along with 4 people cmmorel ddahlem scis0000001 bigbossman
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
    posted to graph_model by shivaram on 2005-08-24 03:24:55 as ** along with 14 people and 9 groups ellakat iris_2001 alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Evangelia stefanoallesina Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
  • Emergence of Scaling in Random Networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by Albert-László Barabási, Réka Albert
    posted to graph_model by shivaram on 2005-08-24 02:50:42 as ** along with 17 people subhacom dragonrez tolosoft balicea ddahlem merazzle muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb
  • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins.
    Proc Natl Acad Sci U S A, Vol. 97, No. 3. (1 February 2000), pp. 1143-1147.
    by T Ito, K Tashiro, S Muta, R Ozawa, T Chiba, M Nishizawa, K Yamamoto, S Kuhara, Y Sakaki
    posted to two_hybrid by shivaram on 2005-08-23 19:56:45 as ** along with 2 people dragonrez hplatero
  • Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147.
    by AC Gavin, M Bösche, R Krause, P Grandi, M Marzioch, A Bauer, J Schultz, JM Rick, AM Michon, CM Cruciat, M Remor, C Höfert, M Schelder, M Brajenovic, H Ruffner, A Merino, K Klein, M Hudak, D Dickson, T Rudi, V Gnau, A Bauch, S Bastuck, B Huhse, C Leutwein, MA Heurtier, RR Copley, A Edelmann, E Querfurth, V Rybin, G Drewes, M Raida, T Bouwmeester, P Bork, B Seraphin, B Kuster, G Neubauer, G Superti-Furga
    posted to affinity_preipitation by shivaram on 2005-08-22 21:52:50 as ** along with 16 people and 2 groups frohike csanford iris_2001 adiel baaden dragonrez helenc lfriedl chad_davis balajis opheliav wnpx becarmson raiyar grahamc nicoleq kdl steinmetzlab
  • Systematic genetic analysis with ordered arrays of yeast deletion mutants.
    Science, Vol. 294, No. 5550. (14 December 2001), pp. 2364-2368.
    by AH Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, M Robinson, S Raghibizadeh, CW Hogue, H Bussey, B Andrews, M Tyers, C Boone
    posted to synthetic_lethality by shivaram on 2005-08-22 21:52:30 as ** along with 6 people and 1 group lfriedl balajis opheliav nirfriedman blaine_5 ruvido kdl
  • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627.
    by Peter Uetz, Loic Giot, Gerard Cagney, Traci A Mansfield, Richard S Judson, James R Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M Rothberg
    posted to two_hybrid by shivaram on 2005-08-22 21:52:02 as ** along with 14 people and 1 group carlk csanford dragonrez bicko lfriedl chad_davis j3xucite dyermd timflutre ruvido gcalda grahamc laughcry hplatero kdl
  • High-betweenness proteins in the yeast protein interaction network.
    J Biomed Biotechnol, Vol. 2005, No. 2. (2005), pp. 96-103.
    by MP Joy, A Brock, DE Ingber, S Huang
    posted to betweenness_centrality by shivaram on 2005-08-22 20:44:46 as ** along with 2 people grahamc iris_2001
  • Defining and identifying communities in networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2658-2663.
    by F Radicchi, C Castellano, F Cecconi, V Loreto, D Parisi
    posted to betweenness_centrality by shivaram on 2005-08-22 20:40:20 as ** along with 8 people and 1 group tnhh carlk jfr yas merazzle gcalda ltabourier sparikh T_lab
  • Subnetwork hierarchies of biochemical pathways.
    Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 532-538.
    by P Holme, M Huss, H Jeong
    posted to betweenness_centrality by shivaram on 2005-08-22 20:38:36 as ** along with 3 people and 1 group icases mikaelhuss karfunkel TNT
  • A method for finding communities of related genes.
    Proc Natl Acad Sci U S A, Vol. 101 Suppl 1 (6 April 2004), pp. 5241-5248.
    by DM Wilkinson, BA Huberman
    posted to betweenness_centrality by shivaram on 2005-08-22 20:36:26 as ** along with 2 people pcahan1 iris_2001
  • Collective dynamics of 'small-world' networks.
    Nature, Vol. 393, No. 6684. (4 June 1998), pp. 440-442.
    by DJ Watts, SH Strogatz
    posted to graph_model by shivaram on 2005-08-19 06:29:07 as ** along with 66 people and 12 groups ddahlem jago Borelli jpbarrette takeha-e jsanpedro ladamic beete ulmer jotwin livingthingdan iris_2001 teferet camster G_RAM kewms KAllendoerfer AdrianMiles mague alexisgallagher Rsavi zqshen cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya ruvido rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes sbianco kb kaks stefanoallesina dbk-lab GraphVis UCD_SmallWorldGraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes 801
  • Emergence of scaling in random networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by AL Barabasi, R Albert
    posted to graph_model by shivaram on 2005-08-19 06:22:48 as ** along with 20 people and 8 groups thecolourblue camster korakot ldfu KAllendoerfer aalibes ChaTo mbliemel alexg yish balicea matteodellamico yoh merazzle maqbes cerkut timflutre ruvido boila koles Philosophy_of_Information dbk-lab Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni contact-id
  • Peeling the yeast protein network.
    Proteomics, Vol. 5, No. 2. (February 2005), pp. 444-449.
    by S Wuchty, E Almaas
    posted to betweenness_centrality by shivaram on 2005-08-19 05:47:24 as ** along with 1 person antonkratz
  • Centers of complex networks.
    J Theor Biol, Vol. 223, No. 1. (7 July 2003), pp. 45-53.
    by S Wuchty, PF Stadler
    posted to betweenness_centrality by shivaram on 2005-08-19 05:46:51 as **
  • Classification of scale-free networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12583-12588.
    by KI Goh, E Oh, H Jeong, B Kahng, D Kim
    posted to betweenness_centrality by shivaram on 2005-08-19 05:40:54 as ** along with 6 people bigbossman merazzle zflavio grahamc marymcglo Evangelia
  • Community structure in social and biological networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826.
    by M Girvan, ME Newman
    posted to betweenness_centrality by shivaram on 2005-08-19 05:40:05 as ** along with 28 people and 5 groups jpbarrette ellakat chibatching compbio verdicchio ganden pridkett korakot mrm rasca jtowle PiersYoung zqshen schaal yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci Evangelia marcio Diego_Prada pipkin stefanoallesina Philosophy_of_Information Blog_and_Wiki_Research GraphVis UCD_SmallWorldGraphVis T_lab
  • The use of edge-betweenness clustering to investigate biological function in protein interaction networks.
    BMC Bioinformatics, Vol. 6, No. 1. (1 March 2005)
    by R Dunn, F Dudbridge, CM Sanderson
    posted to betweenness_centrality by shivaram on 2005-08-19 00:49:54 as ** along with 4 people ellakat tmmurali grahamc maralena
  • Finding and evaluating community structure in networks
    (11 August 2003)
    by MEJ Newman, M Girvan
    posted to betweenness_centrality by shivaram on 2005-08-19 00:48:03 as ** along with 31 people and 11 groups mpotamias kubyaddi apwesolowski dpf theus phauly korakot shelleylyn breyten schaal ldietz bj lfriedl eyliu Peterfine entropy fukken bigbossman hamasaki nojhan dbatorski azygmunt adriandefroment Guff32 abonchen andreacapocci jmarcelino salvoscellato jasonn AnneB HenryR Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST kdl aLifeComplexSys EvolutionaryComputation ComplexAdaptiveSystems Metaheuristics Optimization ilps AGH-IISG
  • Factors that predict better synchronizability on complex networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 69, No. 6 Pt 2. (June 2004)
    by H Hong, BJ Kim, MY Choi, H Park
    posted to betweenness_centrality by shivaram on 2005-08-19 00:44:31 as **
  • Exact scaling properties of a hierarchical network model.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 67, No. 4 Pt 2. (April 2003)
    by JD Noh
    posted to betweenness_centrality by shivaram on 2005-08-19 00:44:19 as **
  • Betweenness centrality correlation in social networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 67, No. 1 Pt 2. (January 2003)
    by KI Goh, E Oh, B Kahng, D Kim
    posted to betweenness_centrality by shivaram on 2005-08-19 00:44:09 as ** along with 1 person merazzle
  • Edge overload breakdown in evolving networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 66, No. 3 Pt 2A. (September 2002)
    by P Holme
    posted to betweenness_centrality by shivaram on 2005-08-19 00:43:53 as **
  • Vertex overload breakdown in evolving networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 2. (June 2002)
    by P Holme, BJ Kim
    posted to betweenness_centrality by shivaram on 2005-08-19 00:43:42 as **
  • Attack vulnerability of complex networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 5 Pt 2. (May 2002)
    by P Holme, BJ Kim, CN Yoon, SK Han
    posted to betweenness_centrality by shivaram on 2005-08-19 00:43:27 as ** along with 2 people merazzle georgiad
  • Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 64, No. 1 Pt 2. (July 2001)
    by ME Newman
    posted to betweenness_centrality by shivaram on 2005-08-19 00:43:15 as ** along with 6 people and 3 groups korakot PatrickD mrm rasca bjorns ltabourier Philosophy_of_Information Blog_and_Wiki_Research Wikipedia
  • Universal behavior of load distribution in scale-free networks.
    Phys Rev Lett, Vol. 87, No. 27 Pt 1. (31 December 2001)
    by KI Goh, B Kahng, D Kim
    posted to betweenness_centrality by shivaram on 2005-08-19 00:42:59 as **
  • Networks and tuberculosis: an undetected community outbreak involving public places.
    Soc Sci Med, Vol. 52, No. 5. (March 2001), pp. 681-694.
    by AS Klovdahl, EA Graviss, A Yaganehdoost, MW Ross, A Wanger, GJ Adams, JM Musser
    posted to betweenness_centrality by shivaram on 2005-08-19 00:41:14 as **
  • Scale-free trees: the skeletons of complex networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 70, No. 4 Pt 2. (October 2004)
    by DH Kim, JD Noh, H Jeong
    posted to betweenness_centrality by shivaram on 2005-08-19 00:36:47 as **
  • A faster algorithm for betweenness centrality
    (2001)
    by U Brandes
    posted to betweenness_centrality by shivaram on 2005-08-18 23:35:06 as ** along with 10 people and 3 groups schaal maqbes nojhan tokushiman jaspervoskuilen gcalda grahamc andreacapocci jmarcelino salvoscellato EvolutionaryComputation Metaheuristics Optimization
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