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shantanu library [28 articles]

最近 shantanu さんのライブラリ .
  • Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions.
    Int J Pept Protein Res, Vol. 7, No. 6. (1975), pp. 445-459.
    by H Taketomi, Y Ueda, N Gō
    posted to no-tag by shantanu on 2007-11-21 03:48:24 as ** along with 1 person dgront
  • Having a BLAST with bioinformatics (and avoiding BLASTphemy).
    Genome Biol, Vol. 2, No. 10. (2001)
    by A Pertsemlidis, JW Fondon
    posted to bioinformatics genomics by shantanu on 2007-10-18 17:41:59 as ** along with 8 people and 2 groups karbak ziquje prtmht textoris cjeans sujaikumar scottstensland hpaces Bioinformatics MathBio
  • Knowledge-based prediction of DNA atomic structure from nucleic sequence.
    Genome Inform, Vol. 16, No. 2. (2005), pp. 12-21.
    by MJ Araúzo-Bravo, A Sarai
    posted to bioinformatics dna dna_structure by shantanu on 2007-10-18 17:40:36 as ** along with 1 person and 2 groups echcram structural_bioinformatics Bioinformatics
  • Linear algebra operators for GPU implementation of numerical algorithms
    (2005)
    by Jens Krüger, Rüdiger Westermann
    posted to algorithms computer_science gpu mathematics by shantanu on 2007-10-18 17:39:32 as ** along with 1 person yodha
  • Bending and curvature calculations in B-DNA.
    Nucleic Acids Res, Vol. 22, No. 24. (11 December 1994), pp. 5497-5503.
    by DS Goodsell, RE Dickerson
    posted to dna dna_structure by shantanu on 2007-10-18 17:38:43 as ** along with 1 person nucleosome
  • Single-nucleosome mapping of histone modifications in S. cerevisiae.
    PLoS Biol, Vol. 3, No. 10. (October 2005)
    by CL Liu, T Kaplan, M Kim, S Buratowski, SL Schreiber, N Friedman, OJ Rando
    posted to chromatin histone histone_modifications nucleosome yeast by shantanu on 2007-10-18 17:37:50 as ** along with 3 people and 1 group zhlei nucleosome olympos Chromatin
  • notes New and Notable: DNA Sequence Mediates Nucleosome Structure and Stability.
    Biophys J (12 October 2007)
    by Shantanu Sharma, Nikolay V V Dokholyan
    posted to chromatin dna histone nucleosome publications by shantanu on 2007-10-18 17:32:48 as ***** along with 1 person and 1 group aalibes Chromatin
  • Gene splice sites correlate with nucleosome positions.
    Gene, Vol. 352 (6 June 2005), pp. 57-62.
    by S Kogan, EN Trifonov
    posted to chromatin histone nucleosome nucleosome_positioning by shantanu on 2007-09-30 18:15:50 as ** along with 2 people and 1 group Cortel nucleosome Chromatin
  • Global nucleosome occupancy in yeast.
    Genome Biol, Vol. 5, No. 9. (2004)
    by BE Bernstein, CL Liu, EL Humphrey, EO Perlstein, SL Schreiber
    posted to chromatin histone nucleosome nucleosome_positioning by shantanu on 2007-09-30 18:15:07 as ** along with 2 people and 2 groups nucleosome kengg Plantandetc Chromatin
  • notes Molecular Dynamic Simulations of Cisplatin- and Oxaliplatin-d(GG) Intrastand Cross-links Reveal Differences in their Conformational Dynamics.
    J Mol Biol (23 August 2007)
    by Shantanu Sharma, Peng Gong, Brenda Temple, Debadeep Bhattacharyya, Nikolay V V Dokholyan, Stephen G G Chaney
    posted to anticancer cancer cisplatin dna_structure drug oxaliplatin publications by shantanu on 2007-09-30 18:06:41 as ***** along with 4 groups structural_bioinformatics MathBio Bioinformatics Computational-Neurobiology
  • Time Scheduling of Transit Systems With Transfer Considerations Using Genetic Algorithms
    Evolutionary Computation, Vol. 6, No. 1. (1998), pp. 1-24.
    by Kalyanmoy Deb, Partha Chakroborty
    posted to algorithms computer_science genetic_algorithms by shantanu on 2007-08-29 20:52:53 as ** along with 1 person and 10 groups aitter structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Numerics Optimization
  • Epigenetic Consequences of Nucleosome Dynamics
    Cell, Vol. 111, No. 3. (1 November 2002), pp. 281-284.
    by Kami Ahmad, Steven Henikoff
    posted to epigenetics nucleosome by shantanu on 2007-08-20 03:33:16 as ** along with 1 person and 8 groups balicea structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Nucleosome remodelers on track
    Nature Structural & Molecular Biology, Vol. 12, No. 9., pp. 732-733.
    by Peter B Becker
    posted to nucleosome remodeling by shantanu on 2007-08-20 03:31:38 as ** along with 8 groups structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • notes Protein folding: Then and now.
    Arch Biochem Biophys (8 June 2007)
    by Yiwen Chen, Feng Ding, Huifen Nie, Adrian W W Serohijos, Shantanu Sharma, Kyle C C Wilcox, Shuangye Yin, Nikolay V V Dokholyan
    posted to protein_folding publications by shantanu on 2007-07-02 01:12:30 as ***** along with 1 person and 8 groups choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • notes The path of DNA in the kinetochore.
    Curr Biol, Vol. 16, No. 8. (18 April 2006)
    by K Bloom, S Sharma, NV Dokholyan
    posted to centromere chromatin dna histone nucleosome publications by shantanu on 2007-05-05 17:46:09 as ***** along with 8 groups structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • notes iFold: a platform for interactive folding simulations of proteins.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694.
    by S Sharma, F Ding, H Nie, D Watson, A Unnithan, J Lopp, D Pozefsky, NV Dokholyan
    posted to protein_folding publications simulation by shantanu on 2007-04-26 00:50:16 as ***** along with 1 person and 8 groups plofje structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • notes Multiscale Modeling of Nucleosome Dynamics
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1457-1470.
    by Shantanu Sharma, Feng Ding, Nikolay V Dokholyan
    posted to chromatin dna histone nucleosome publications simulation by shantanu on 2007-04-26 00:49:03 as ***** along with 4 people and 9 groups aalibes choonpeng skoch3 phisics structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Koch_Lab
  • A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4280-4288.
    by Yang Xie, Wei Pan, Arkady B Khodursky
    posted to microarray by shantanu on 2006-06-28 04:43:23 as ** along with 5 people and 8 groups paszkows klaudius dquest shigepong shikin structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Recent advances in Cys-loop receptor structure and function
    Nature, Vol. 440, No. 7083. (23 March 2006), pp. 448-455.
    by Steven M Sine, Andrew G Engel
    posted to protein_structure by shantanu on 2006-04-05 19:20:33 as ** along with 2 people and 8 groups barry frooonk structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level.
    Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2860-2874.
    by NM Luscombe, RA Laskowski, JM Thornton
    posted to protein_dna protein_structure by shantanu on 2006-02-07 18:32:29 as ** along with 1 person and 8 groups medic0747 structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Binding MOAD (Mother Of All Databases).
    Proteins (21 June 2005)
    by Liegi Hu, Mark L L Benson, Richard D D Smith, Michael G G Lerner, Heather A A Carlson
    posted to databases by shantanu on 2006-02-03 00:38:53 as ** along with 6 people and 10 groups BragilMassoud sangeetha caporaso blackbart papatonyhill higueruelo structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology biomedical-nlp insilicodrug
  • How hormone receptor-DNA binding affects nucleosomal DNA: the role of symmetry.
    Biophys J, Vol. 72, No. 5. (May 1997), pp. 2056-2067.
    by TC Bishop, D Kosztin, K Schulten
    posted to dna_structure nucleosome by shantanu on 2006-01-31 23:26:03 as ** along with 8 groups structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Histone acetylation in chromatin structure and transcription
    Nature, Vol. 389, No. 6649. (1997), pp. 349-352.
    by Michael Grunstein
    posted to histone transcription by shantanu on 2006-01-31 21:44:13 as **** along with 1 person and 8 groups olympos structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Automatic 3D Protein Structure Classification without Structural Alignment
    Journal of Computational Biology, Vol. 12, No. 9. (2005), pp. 1221-1241.
    by Zeyar Aung, Kian-Lee Tan
    posted to protein_structure by shantanu on 2006-01-28 07:29:58 as **** along with 2 people and 8 groups ana barry structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Helix to helix packing in proteins.
    J Mol Biol, Vol. 145, No. 1. (5 January 1981), pp. 215-250.
    by C Chothia, M Levitt, D Richardson
    posted to protein_structure by shantanu on 2006-01-28 07:28:09 as ** along with 1 person and 8 groups ana structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Small-world view of the amino acids that play a key role in protein folding.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 1. (June 2002)
    by M Vendruscolo, NV Dokholyan, E Paci, M Karplus
    posted to protein_folding by shantanu on 2006-01-25 05:03:12 as ** along with 3 people and 8 groups ana barry choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
    posted to yeast by shantanu on 2006-01-25 04:59:31 as ** along with 23 people and 10 groups Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
  • notes Structure alignment via Delaunay tetrahedralization.
    Proteins (26 April 2005)
    by Jeffrey Roach, Shantanu Sharma, Maryna Kapustina, Charles W W Carter
    posted to publications structure_alignment by shantanu on 2006-01-25 04:52:11 as ***** along with 3 people and 8 groups BragilMassoud ana barry structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
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