GEPAS, a web-based tool for microarray data analysis and interpretation

@article{gepas2008, abstract = {Gene Expression Profile Analysis Suite (GEPAS) is one of the most complete and extensively used web-based packages for microarray data analysis. During its more than 5 years of activity it has continuously been updated to keep pace with the state-of-the-art in the changing microarray data analysis arena. GEPAS offers diverse analysis options that include well established as well as novel algorithms for normalization, gene selection, class prediction, clustering and functional profiling of the experiment. New options for time-course (or dose-response) experiments, microarray-based class prediction, new clustering methods and new tests for differential expression have been included. The new pipeliner module allows automating the execution of sequential analysis steps by means of a simple but powerful graphic interface. An extensive re-engineering of GEPAS has been carried out which includes the use of web services and Web 2.0 technology features, a new user interface with persistent sessions and a new extended database of gene identifiers. GEPAS is nowadays the most quoted web tool in its field and it is extensively used by researchers of many countries and its records indicate an average usage rate of 500 experiments per day. GEPAS, is available at http://www.gepas.org. 10.1093/nar/gkn303}, author = {Tarraga, Joaquin and Medina, Ignacio and Carbonell, Jose and Huerta-Cepas, Jaime and Minguez, Pablo and Alloza, Eva and Al-Shahrour, Fatima and Vegas-Azcarate, Susana and Goetz, Stefan and Escobar, Pablo and Garcia-Garcia, Francisco and Conesa, Ana and Montaner, David and Dopazo, Joaquin }, citeulike-article-id = {2857008}, doi = {http://dx.doi.org/10.1093/nar/gkn303}, journal = {Nucl. Acids Res.}, month = {May}, pages = {gkn303+}, posted-at = {2008-06-02 14:50:49}, priority = {2}, title = {GEPAS, a web-based tool for microarray data analysis and interpretation}, url = {http://dx.doi.org/10.1093/nar/gkn303}, year = {2008} }

TY - JOUR ID - gepas2008 L3 - citeulike-article-id:2857008 TI - GEPAS, a web-based tool for microarray data analysis and interpretation JF - Nucl. Acids Res. SP - gkn303 N2 - Gene Expression Profile Analysis Suite (GEPAS) is one of the most complete and extensively used web-based packages for microarray data analysis. During its more than 5 years of activity it has continuously been updated to keep pace with the state-of-the-art in the changing microarray data analysis arena. GEPAS offers diverse analysis options that include well established as well as novel algorithms for normalization, gene selection, class prediction, clustering and functional profiling of the experiment. New options for time-course (or dose-response) experiments, microarray-based class prediction, new clustering methods and new tests for differential expression have been included. The new pipeliner module allows automating the execution of sequential analysis steps by means of a simple but powerful graphic interface. An extensive re-engineering of GEPAS has been carried out which includes the use of web services and Web 2.0 technology features, a new user interface with persistent sessions and a new extended database of gene identifiers. GEPAS is nowadays the most quoted web tool in its field and it is extensively used by researchers of many countries and its records indicate an average usage rate of 500 experiments per day. GEPAS, is available at http://www.gepas.org. 10.1093/nar/gkn303 AU - Tarraga, Joaquin AU - Medina, Ignacio AU - Carbonell, Jose AU - Huerta-Cepas, Jaime AU - Minguez, Pablo AU - Alloza, Eva AU - Al-Shahrour, Fatima AU - Vegas-Azcarate, Susana AU - Goetz, Stefan AU - Escobar, Pablo AU - Garcia-Garcia, Francisco AU - Conesa, Ana AU - Montaner, David AU - Dopazo, Joaquin PY - 2008/05/28/ UR - http://dx.doi.org/10.1093/nar/gkn303 ER -