Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

by: A Conesa, S Götz, JM García-Gómez, J Terol, M Talón, M Robles

Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3674-3676.

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Abstract

SUMMARY: We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one application GO annotation based on similarity searches with statistical analysis and highlighted visualization on directed acyclic graphs. This tool offers a suitable platform for functional genomics research in non-model species. B2G is an intuitive and interactive desktop application that allows monitoring and comprehension of the whole annotation and analysis process. AVAILABILITY: Blast2GO is freely available via Java Web Start at http://www.blast2go.de. SUPPLEMENTARY MATERIAL: http://www.blast2go.de -> Evaluation.

@article{citeulike:1234120, abstract = {SUMMARY: We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one application GO annotation based on similarity searches with statistical analysis and highlighted visualization on directed acyclic graphs. This tool offers a suitable platform for functional genomics research in non-model species. B2G is an intuitive and interactive desktop application that allows monitoring and comprehension of the whole annotation and analysis process. AVAILABILITY: Blast2GO is freely available via Java Web Start at http://www.blast2go.de. SUPPLEMENTARY MATERIAL: http://www.blast2go.de -> Evaluation.}, address = {Centro de Gen\'{o}mica, Instituto Valenciano de Investigaciones Agrarias, Moncada, Valencia, Spain. aconesa@ivia.es}, author = {Conesa, A. and G\"{o}tz, S. and Garc\'{i}a-G\'{o}mez, J. M. and Terol, J. and Tal\'{o}n, M. and Robles, M. }, citeulike-article-id = {1234120}, doi = {http://dx.doi.org/10.1093/bioinformatics/bti610}, issn = {1367-4803}, journal = {Bioinformatics}, keywords = {b2gpaper2, blast2go, my\_papers}, month = {September}, number = {18}, pages = {3674--3676}, posted-at = {2007-04-20 14:27:30}, priority = {5}, title = {Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.}, url = {http://dx.doi.org/10.1093/bioinformatics/bti610}, volume = {21}, year = {2005} }

RIS record

TY - JOUR ID - citeulike:1234120 L3 - citeulike-article-id:1234120 TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. JF - Bioinformatics VL - 21 IS - 18 SP - 3674 EP - 3676 AD - Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias, Moncada, Valencia, Spain. aconesa@ivia.es SN - 1367-4803 N2 - SUMMARY: We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one application GO annotation based on similarity searches with statistical analysis and highlighted visualization on directed acyclic graphs. This tool offers a suitable platform for functional genomics research in non-model species. B2G is an intuitive and interactive desktop application that allows monitoring and comprehension of the whole annotation and analysis process. AVAILABILITY: Blast2GO is freely available via Java Web Start at http://www.blast2go.de. SUPPLEMENTARY MATERIAL: http://www.blast2go.de -> Evaluation. KW - b2gpaper2 KW - blast2go KW - my_papers AU - Conesa, A AU - Götz, S AU - García-Gómez, JM AU - Terol, J AU - Talón, M AU - Robles, M PY - 2005/09/15/ UR - http://dx.doi.org/10.1093/bioinformatics/bti610 ER -

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