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rvosa monte-carlo [30 articles]

最近 rvosa さんのライブラリに追加された論文の中から タグ monte-carlo. You can also see everyone's monte-carlo.
  • Mixture models in phylogenetic inference
    (28 April 2008)
    by Mark Pagel
    posted to substitution-models rates phylogeny monte-carlo methods markov-chains bayesian by rvosa on 2008-08-18 02:27:00 as ** along with 1 group FAB-lab
  • Modelling Heterotachy in Phylogenetic Inference by Reversible-Jump Markov chain Monte Carlo
    Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, Vol. In review
    by Mark Pagel, Andrew Meade
    posted to substitution-models rates monte-carlo methods markov-chains bayesian by rvosa on 2008-08-18 01:50:23 as ** along with 1 group FAB-lab
  • Bayesian Analysis of Correlated Evolution of Discrete Characters by Reversible-Jump Markov Chain Monte Carlo.
    The American naturalist, Vol. 167, No. 6. (9 May 2006), pp. 808-825.
    by Mark Pagel, Andrew Meade
    posted to statistics monte-carlo methods markov-chains evolution comparative characters bayesian by rvosa on 2008-08-09 09:41:27 as ** along with 1 group FAB-lab
  • Understanding the Metropolis-Hastings Algorithm
    The American Statistician, Vol. 49, No. 4. (1995), pp. 327-335.
    by Siddhartha Chib, Edward Greenberg
    posted to statistics monte-carlo methods markov-chains bayesian algorithms by rvosa on 2008-05-13 01:30:09 as ** along with 11 people and 2 groups i-stevenson ansobol quianominorleo jrw nojhan markusd ldietz pcarbo icosma adriandefroment leonnovelo FAB-lab Metaheuristics
  • Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 705-716.
    by ZH Yang, AD Yoder
    posted to animals bayesian clock-like divergence lemuridae likelihood mammals markov-chains monte-carlo morphology primates rates substitution-models vertebrates by rvosa on 2008-02-07 00:05:52 as **
  • notes Bayesian Phylogenetic Inference Using DNA Sequences: A Markov Chain Monte Carlo Method
    Molecular Biology and Evolution, Vol. 14, No. 7. (1997), pp. 717-724.
    by Ziheng Yang, Bruce Rannala
    posted to bayesian diversification extinction markov-chains monte-carlo phylogeny speciation substitution-models by rvosa on 2008-02-07 00:05:52 as **
  • notes Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models
    Molecular Biology and Evolution, Vol. 17, No. 6. (2000), pp. 875-881.
    by Korbinian Strimmer, Vincent Moulton
    posted to bayesian evolution graph likelihood markov-chains monte-carlo networks phylogeny by rvosa on 2008-02-07 00:05:48 as **
  • notes Resolution of the early Placental mammal radiation using Bayesian phylogenetics
    Science, Vol. 294 (2001), pp. 2348-2351.
    by WJ Murphy, E Eizirik, SJ O'Brien, O Madsen, M Scally, CJ Douady, E Teeling, OA Ryder, MJ Stanhope, WW De Jong, MS Springer
    posted to bayesian markov-chains monte-carlo phylogeny radiation by rvosa on 2008-02-07 00:05:38 as **
  • notes Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
    Biometrics, Vol. 55 (1999), pp. 1-12.
    by Bob Mau, Michael A Newton, Bret Larget
    posted to bayesian evolution markov-chains methods monte-carlo phylogeny by rvosa on 2008-02-07 00:05:36 as **
  • notes The phylogeny of the subgroups within the melanogaster species group: Likelihood tests on COI and COII sequences and a Bayesian estimate of phylogeny
    Molecular Phylogenetics and Evolution, Vol. 37, No. 1. (2004), pp. 15-24.
    by Rebecca L Lewis, Andrew T Beckenbach, Arne
    posted to bayesian likelihood markov-chains mitochondrial monte-carlo ratio-test by rvosa on 2008-02-07 00:05:34 as **
  • notes Phylogenetic systematics turns over a new leaf
    Trends in Ecology and Evolution, Vol. 16, No. 1. (2001), pp. 30-37.
    by Paul O Lewis
    posted to bayesian markov-chains methods monte-carlo by rvosa on 2008-02-07 00:05:34 as **
  • notes Markov Chain Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees
    Molecular Biology and Evolution, Vol. 16, No. 6. (1999), pp. 750-759.
    by Bret Larget, Donald L Simon
    posted to algorithms bayesian markov-chains methods monte-carlo phylogeny by rvosa on 2008-02-07 00:05:34 as **
  • Phylogenetics of advanced snakes (Caenophidia) based on four mitochondrial genes
    Systematic Biology, Vol. 52, No. 4. (2003), pp. 439-459.
    by CMR Kelly, NP Barker, MH Villet
    posted to bayesian classification likelihood markov-chains methods monte-carlo mrp parsimony supertree by rvosa on 2008-02-07 00:05:33 as **
  • notes A Bayesian framework for the analysis of cospeciation
    Evolution, Vol. 54, No. 2. (2000), pp. 352-364.
    by John P Huelsenbeck, Bruce Rannala, Bret Larget
    posted to bayesian diversification evolution markov-chains monte-carlo parasitism phylogeny speciation by rvosa on 2008-02-07 00:05:31 as **
  • Monte Carlo sampling methods using Markov chains and their applications
    Biometrika, Vol. 57 (1970), pp. 97-109.
    by WK Hastings
    posted to bayesian markov-chains monte-carlo by rvosa on 2008-02-07 00:05:30 as **
  • notes Inferring phylogenies from DNA sequences of unequal base compositions
    Proceedings of the National Academy of Sciences USA, Vol. 92 (1995), pp. 11317-11321.
    by Nicolas Galtier, Manolo Gouy
    posted to algorithms genetics markov-chains methods monte-carlo phylogeny by rvosa on 2008-02-07 00:05:17 as **
  • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 665-673.
    by P Erixon, B Svennblad, T Britton, B Oxelman
    posted to bayesian likelihood markov-chains methods monte-carlo simulation substitution-models by rvosa on 2008-02-07 00:05:17 as **
  • Identifying conflicting signal in a multigene analysis reveals a highly resolved tree: The phylogeny of Rodentia (Mammalia)
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 604-617.
    by RW Debry
    posted to animals bayesian dna likelihood mammals markov-chains monte-carlo nuclear phylogeny phyloinformatics protein rodents vertebrates by rvosa on 2008-02-07 00:05:14 as **
  • Maximum a Posteriori Tree Augmented Naive Bayes Classifiers
    Discovery Science: 7th International Conference (2004)
    by J Cerquides, RL de Mantaras
    posted to algorithms bayesian markov-chains methods monte-carlo by rvosa on 2008-01-30 08:07:20 as **
  • Phylogeny estimation: traditional and Bayesian approaches
    Nature Reviews Genetics (Jan 2003)
    by M Holder, P Lewis
    posted to algorithms bayesian likelihood markov-chains methods monte-carlo parsimony phylogeny by rvosa on 2008-01-30 08:07:19 as **
  • Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
    Journal of Molecular Evolution, Vol. 43 (1996), pp. 304-311.
    by B Rannala, Z Yang
    posted to algorithms bayesian evolution likelihood markov-chains methods monte-carlo phylogeny source-trees by rvosa on 2008-01-30 08:07:16 as **
  • Bayesian phylogenetic analysis of combined data
    Syst Biol, Vol. 53, No. 1. (2004), pp. 47-67.
    by Johan AA Nylander, Fredrik Ronquist, John P Huelsenbeck, JLN Aldrey
    posted to animals bayesian classification data-mining evolution genetics insects markov-chains methods monte-carlo phylogeny substitution-models by rvosa on 2008-01-30 08:07:16 as **
  • An Essay towards Solving a Problem in the Doctrine of Chances. By the Late Rev. Mr. Bayes, communicated by Mr. Price, in a letter to John Canton, M. A. and F. R. S.
    Philosophical Transactions (1683-1775) (1763)
    by M Bayes, M Price
    posted to algorithms bayesian methods monte-carlo by rvosa on 2008-01-30 08:07:15 as **
  • Potential applications and pitfalls of Bayesian inference of phylogeny
    Syst Biol, Vol. 51, No. 5. (Oct 2002), pp. 673-88.
    by John P Huelsenbeck, Bret Larget, Richard E Miller, Fredrik Ronquist
    posted to bayesian genetics markov-chains methods monte-carlo phylogeny substitution-models by rvosa on 2008-01-30 08:07:10 as **
  • Testing macro-evolutionary models using incomplete molecular phylogenies
    Proc Biol Sci, Vol. 267, No. 1459. (Nov 2000), pp. 2267-72.
    by OG Pybus, PH Harvey
    posted to algorithms animals birds diversification evolution extinction mammals methods models monte-carlo phylogeny primates shrews songbirds speciation vertebrates by rvosa on 2008-01-30 08:07:08 as **
  • Towards building the tree of life: a simulation study for all angiosperm genera
    Syst Biol, Vol. 54, No. 2. (Apr 2005), pp. 183-96.
    by Nicolas Salamin, Trevor R Hodkinson, Vincent S Coates
    posted to classification genetics markov-chains methods models monte-carlo phylogeny plants sequence simulation by rvosa on 2008-01-30 08:07:07 as **
  • Rapid cladogenesis in marine fishes revisited
    Evolution, Vol. 59, No. 5. (May 2005), pp. 1119-27.
    by Lukas Rüber, Rafael Zardoya
    posted to alignment animals databases dna evolution fishes likelihood methods models monte-carlo phylogeny proteins rna sequence speciation vertebrates by rvosa on 2008-01-30 08:07:06 as **
  • Phylogenetic MCMC algorithms are misleading on mixtures of trees.
    Science, Vol. 309, No. 5744. (30 September 2005), pp. 2207-2209.
    by E Mossel, E Vigoda
    posted to algorithms bayesian inference likelihood markov-chains methods monte-carlo phylogeny by rvosa on 2005-10-13 22:44:38 as ** along with 1 group FAB-lab
  • MRBAYES: Bayesian inference of phylogenetic trees.
    Bioinformatics, Vol. 17, No. 8. (August 2001), pp. 754-755.
    by JP Huelsenbeck, F Ronquist
    posted to algorithms bayesian inference likelihood markov-chains monte-carlo phylogeny software by rvosa on 2005-10-12 21:40:08 as ** along with 4 people and 1 group bpb spavey AaronDarling CharlesM FAB-lab
  • Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
    Mol Biol Evol, Vol. 21, No. 6. (June 2004), pp. 1123-1133.
    by John P Huelsenbeck, Bret Larget, Michael E Alfaro
    posted to algorithms bayesian clock-like likelihood markov-chains methods monte-carlo phylogeny ratio-test substitution-models by rvosa on 2005-10-12 21:11:30 as ** along with 1 person and 1 group aprasad FAB-lab
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