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ruvido library [219 articles]

最近 ruvido さんのライブラリ (優先度順).
  • Zonal methods for the parallel execution of range-limited N-body simulations
    Journal of Computational Physics, Vol. 221, No. 1. (20 January 2007), pp. 303-329.
    by Kevin J Bowers, Ron O Dror, David E Shaw
    posted to algorithm shaw by ruvido on 2008-02-12 15:12:53 as *****
  • A reappraisal of what we have learnt during three decades of computer simulations on water
    Journal of Molecular Liquids, Vol. 101, No. 1-3. (November 2002), pp. 219-260.
    by Bertrand Guillot
    posted to water by ruvido on 2008-02-09 22:06:06 as ***** along with 2 people loison softsimu
  • The Structure of the First Coordination Shell in Liquid Water
    Science, Vol. 304, No. 5673. (14 May 2004), pp. 995-999.
  • Coarse-grained model of entropic allostery.
    Phys Rev Lett, Vol. 93, No. 9. (27 August 2004)
    by RJ Hawkins, TC McLeish
    posted to allostery entropy by ruvido on 2007-12-29 19:58:30 as ***** along with 2 people higueruelo lna
  • A Computational Investigation of Allostery in the Catabolite Activator Protein
    J. Am. Chem. Soc., Vol. 129, No. 50. (19 December 2007), pp. 15668-15676.
    by L Li, VN Uversky, AK Dunker, SO Meroueh
  • Anomalous Diffusion and Relaxation Close to Thermal Equilibrium: A Fractional Fokker-Planck Equation Approach
    Physical Review Letters, Vol. 82, No. 18. (3 May 1999), 3563.
    by Ralf Metzler, Eli Barkai, Joseph Klafter
    posted to subdiffusion dynamics by ruvido on 2008-08-19 14:06:34 as **
  • Protein Conformational Dynamics Probed by Single-Molecule Electron Transfer
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 262-266.
    by Haw Yang, Guobin Luo, Pallop Karnchanaphanurach, Tai-Man Louie, Ivan Rech, Sergio Cova, Luying Xun, Sunney X Xie
    posted to subdiffusion experimental dynamics by ruvido on 2008-08-19 13:14:51 as **
  • Fractals without anomalous diffusion
    Physical Review E, Vol. 49, No. 3. (1 March 1994), R1785.
    by Raffaella Burioni, Davide Cassi
    posted to subdiffusion random_walk fractals by ruvido on 2008-06-10 19:47:19 as **
  • Diffusion in hierarchies
    Physical Review A, Vol. 38, No. 8. (15 October 1988), 4261.
    by Karl H Hoffmann, Paolo Sibani
    posted to subdiffusion random_walk by ruvido on 2008-06-10 19:46:42 as ** along with 1 person baronka
  • RNA dynamics: it is about time
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Hashim M Al-Hashimi, Nils G Walter
    posted to rna by ruvido on 2008-06-10 17:09:24 as ** along with 1 person barry
  • How We See Ourselves and How We See Others
    Science, Vol. 320, No. 5880. (30 May 2008), pp. 1177-1180.
    by Emily Pronin
    posted to psichology other by ruvido on 2008-05-30 14:08:59 as **
  • Hierarchies and logarithmic oscillations in the temporal relaxation patterns of proteins and other complex systems.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 20. (28 September 1999), pp. 11085-11089.
    posted to subdiffusion random_walk hierarchy fractals by ruvido on 2008-05-29 11:02:17 as **
  • Random walks with feedback on fractal lattices
    Physical Review E, Vol. 66, No. 3. (2002), 031106.
    by Beatrix M Schulz, Michael Schulz, Steffen Trimper
    posted to subdiffusion random_walk fractals by ruvido on 2008-05-28 20:14:33 as **
  • Subdiffusion and localization in the one-dimensional trap model
    Physical Review E, Vol. 67, No. 2. (27 February 2003), 026128.
    by EM Bertin, JP Bouchaud
    posted to subdiffusion random_walk by ruvido on 2008-05-28 20:12:04 as **
  • Random walk and trapping processes on scale-free networks
    Physical Review E, Vol. 70, No. 4. (25 October 2004), 046116.
    by Lazaros K Gallos
    posted to random_walk by ruvido on 2008-05-28 20:10:43 as **
  • Probing microscopic origins of confined subdiffusion by first-passage observables
    Proceedings of the National Academy of Sciences, Vol. 105, No. 15. (15 April 2008), pp. 5675-5680.
    posted to subdiffusion random_walk fractals by ruvido on 2008-05-28 20:04:36 as **
  • Kinetic and Structural Studies of the Allosteric Conformational Changes Induced by Binding of cAMP to the cAMP Receptor Protein from Escherichia coli
    Biochemistry, Vol. 45, No. 2. (17 January 2006), pp. 373-380.
    by E Fic, A Polit, Z Wasylewski
    posted to kinetics cap by ruvido on 2008-05-27 15:43:50 as **
  • Protein dynamics and 1/f noise.
    Biophys. J., Vol. 63, No. 2. (1 August 1992), pp. 594-598.
    by TG Dewey, JG Bann
    posted to protein fractals dynamics by ruvido on 2008-05-21 16:14:20 as ** along with 1 person wilbur
  • Fractals in Molecular Biophysics
    Oxford University Press (1997)
    by Thomas G Dewey
    posted to protein fractals dynamics by ruvido on 2008-05-21 15:54:47 as **
  • Probing dynamical disorder kinetics with chemical relaxation techniques
    Chemical Physics, Vol. 161, No. 3. (15 April 1992), pp. 339-350.
    by Gregory T Dewey
    posted to protein fractals dynamics by ruvido on 2008-05-21 15:51:28 as **
  • KEGG: kyoto encyclopedia of genes and genomes.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 27-30.
    by M Kanehisa, S Goto
  • BIND--The Biomolecular Interaction Network Database.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 242-245.
    by GD Bader, I Donaldson, C Wolting, BF Ouellette, T Pawson, CW Hogue
    posted to chapter database ppi by ruvido on 2008-04-10 15:30:32 as ** along with 4 people satre carlk wnpx blackbart
  • From words to literature in structural proteomics.
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225.
  • Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 A Resolution
    Cell, Vol. 98, No. 6. (17 September 1999), pp. 811-824.
    by Gongyi Zhang, Elizabeth A Campbell, Leonid Minakhin, Catherine Richter, Konstantin Severinov, Seth A Darst
    posted to chapter ppi xray by ruvido on 2008-04-09 18:05:15 as **
  • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
    Science, Vol. 289, No. 5481. (11 August 2000), pp. 905-920.
    by N Ban, P Nissen, J Hansen, PB Moore, TA Steitz
    posted to chapter ppi xray by ruvido on 2008-04-09 18:03:20 as ** along with 2 people P2324548 eckart_bindewald
  • Identification of protein-protein interfaces by decreased amide proton solvent accessibility.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14705-14710.
    by JG Mandell, AM Falick, EA Komives
    posted to chapter nmr ppi by ruvido on 2008-04-09 18:00:44 as **
  • Filtering and selection of structural models: combining docking and NMR.
    Proteins, Vol. 53, No. 1. (1 October 2003), pp. 18-32.
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:57:44 as **
  • Identification of the protein kinase A regulatory RIalpha-catalytic subunit interface by amide H/2H exchange and protein docking.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13264-13269.
    by GS Anand, D Law, JG Mandell, AN Snead, I Tsigelny, SS Taylor, LF Ten Eyck, EA Komives
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:55:03 as **
  • Ten thousand interactions for the molecular biologist
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1317-1321.
    by Patrick Aloy, Robert B Russell
  • High-resolution protein-protein docking
    Current Opinion in Structural Biology, Vol. 16, No. 2. (April 2006), pp. 183-193.
    by Jeffrey J Gray
    posted to chapter docking ppi by ruvido on 2008-04-09 16:00:27 as ** along with 6 people higueruelo aqeel jwm ima bluvsh1 cjeans
  • Computational Prediction of Protein–Protein Interactions
    Molecular Biotechnology, Vol. 38, No. 1. (20 January 2008), pp. 1-17.
    by Lucy Skrabanek, Harpreet Saini, Gary Bader, Anton Enright
    posted to chapter genome by ruvido on 2008-04-09 15:47:40 as ** along with 2 people penpen926 jyuh
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
  • Systematic genetic analysis with ordered arrays of yeast deletion mutants.
    Science, Vol. 294, No. 5550. (14 December 2001), pp. 2364-2368.
    by AH Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, M Robinson, S Raghibizadeh, CW Hogue, H Bussey, B Andrews, M Tyers, C Boone
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
  • Inferring protein interactions from phylogenetic distance matrices.
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2039-2045.
    posted to chapter genome by ruvido on 2008-04-09 14:55:50 as ** along with 3 people and 1 group lfriedl balajis wnpx kdl
  • Exploiting the co-evolution of interacting proteins to discover interaction specificity.
    J Mol Biol, Vol. 327, No. 1. (14 March 2003), pp. 273-284.
    by AK Ramani, EM Marcotte
    posted to chapter genome by ruvido on 2008-04-09 14:55:17 as ** along with 1 person balajis
  • Co-evolutionary analysis reveals insights into protein-protein interactions.
    J Mol Biol, Vol. 324, No. 1. (15 November 2002), pp. 177-192.
    by CS Goh, FE Cohen
    posted to chapter genome by ruvido on 2008-04-09 14:54:46 as ** along with 1 person bicko
  • Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.
    Proc Natl Acad Sci U S A, Vol. 96, No. 8. (13 April 1999), pp. 4285-4288.
  • Measuring genome evolution.
    Proc Natl Acad Sci U S A, Vol. 95, No. 11. (26 May 1998), pp. 5849-5856.
    by MA Huynen, P Bork
  • Collective dynamics of 'small-world' networks.
    Nature, Vol. 393, No. 6684. (4 June 1998), pp. 440-442.
    by DJ Watts, SH Strogatz
  • Emergence of scaling in random networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by AL Barabasi, R Albert
  • A model of large-scale proteome evolution
    Advances in Complex Systems, Vol. 5, No. 1. (2002), pp. 43-54.
    by RV Sole, Pastor R Satorras, E Smith, TB Kepler
    posted to chapter ppi by ruvido on 2008-04-08 16:25:27 as **
  • Preferential attachment in the protein network evolution.
    Phys Rev Lett, Vol. 91, No. 13. (26 September 2003)
    posted to chapter ppi by ruvido on 2008-04-08 16:22:53 as ** along with 3 people dragonrez gurkanbebek cjeans
  • Modeling of Protein Interaction Networks
    ComPlexUs, Vol. 1 (2003), pp. 38-44.
    posted to chapter ppi by ruvido on 2008-04-08 16:21:31 as **
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
  • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627.
    by Peter Uetz, Loic Giot, Gerard Cagney, Traci A Mansfield, Richard S Judson, James R Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M Rothberg
  • Scale-free networks from varying vertex intrinsic fitness.
    Phys Rev Lett, Vol. 89, No. 25. (16 December 2002)
  • Potential artefacts in protein-interaction networks.
    FEBS Lett, Vol. 530, No. 1-3. (23 October 2002), pp. 253-254.
    by P Aloy, RB Russell
    posted to chapter ppi by ruvido on 2008-04-07 17:23:28 as ** along with 3 people chad_davis wnpx gurkanbebek
  • Protein interactions: two methods for assessment of the reliability of high throughput observations.
    Mol Cell Proteomics, Vol. 1, No. 5. (May 2002), pp. 349-356.
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