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rabio monte_carlo [28 articles]

最近 rabio さんのライブラリに追加された論文の中から タグ monte_carlo. You can also see everyone's monte_carlo.
  • On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review
    Journal of Computational Chemistry, Vol. 29, No. 2. (14 June 2007), pp. 157-166.
    by Markus Christen, Wilfred FF van Gunsteren
    posted to conformation_serching molecular_dynamics monte_carlo review by rabio on 2007-11-04 14:04:35 as *** along with 4 people BragilMassoud dgront somak dmobley
  • Introduction To Monte Carlo Algorithms
    (14 Nov 1998)
    by Werner Krauth
    edited by J Kertesz, Kondor
    posted to monte_carlo review by rabio on 2007-07-22 17:09:16 as ** along with 11 people bertelsen ansobol stephensalomons penka dgront gane5h ujarmatokyaniv softsimu mijam tharris tertel
  • A Comparison Between Broad Histogram and Multicanonical Methods
    Journal of Statistical Physics, Vol. 99, No. 3--4. (1 May 2000), pp. 691-705.
    by AR Lima, PMC de Oliveira, TJP Penna
    posted to comparition histograms ising_model monte_carlo multicanonical_ensemble by rabio on 2007-02-27 15:59:07 as **
  • Density of states simulations of proteins
    The Journal of Chemical Physics, Vol. 118, No. 9. (2003), pp. 4285-4290.
    by Nitin Rathore, Thomas A Knotts, Juan J de Pablo
    posted to charmm monte_carlo protein_thermodynamics wang-landau_sampling by rabio on 2007-02-27 14:03:44 as read
  • Monte Carlo simulation of proteins through a random walk in energy space
    The Journal of Chemical Physics, Vol. 116, No. 16. (2002), pp. 7225-7230.
    by Nitin Rathore, Juan J de Pablo
    posted to histograms monte_carlo phase_transition protein_thermodynamics reduced_models sicho simualted_aniling strutcture_prediction wang-landau_sampling by rabio on 2007-02-27 13:55:13 as read
  • Multicanonical algorithms for first order phase transitions
    Physics Letters B, Vol. 267, No. 2. (12 September 1991), pp. 249-253.
    by Bernd A Berg, Thomas Neuhaus
    posted to monte_carlo multicanonical_ensemble by rabio on 2007-02-26 15:07:36 as **
  • Monte Carlo Sampling Methods Using Markov Chains and Their Applications
    Biometrika, Vol. 57, No. 1. (1970), pp. 97-109.
    by WK Hastings
    posted to metropolis_sampling monte_carlo by rabio on 2007-02-26 14:00:34 as ** along with 5 people bfraser icosma lcigler markusd vplagnol
  • Equation of State Calculations by Fast Computing Machines
    The Journal of Chemical Physics, Vol. 21, No. 6. (June 1953), pp. 1087-1092.
    by Nicholas Metropolis, Arianna W Rosenbluth, Marshall N Rosenbluth, Augusta H Teller, Edward Teller
    posted to metropolis_sampling monte_carlo by rabio on 2007-02-26 13:07:30 as ** along with 13 people and 1 group gale82 Jarosik apostola chad_davis tobin mkurc gcalda Akimasa Bc91 guxiyou petermilner jjray naegele LIGO
  • Multicanonical ensemble: A new approach to simulate first-order phase transitions
    Physical Review Letters, Vol. 68, No. 1. (6 January 1992), pp. 9-12.
    by Bernd A Berg, Thomas Neuhaus
    posted to monte_carlo multicanonical_ensemble by rabio on 2007-02-26 08:51:08 as **
  • New Monte Carlo algorithm: Entropic sampling
    Physical Review Letters, Vol. 71, No. 2. (1993), pp. 211-214.
    by Jooyoung Lee
    posted to monte_carlo multicanonical_ensemble by rabio on 2007-02-26 08:47:23 as **
  • Replica Monte Carlo Simulation of Spin-Glasses
    Physical Review Letters, Vol. 57, No. 21. (24 November 1986), 2607.
    by Robert H Swendsen, Jian S Wang
    posted to monte_carlo replica_method by rabio on 2007-02-13 15:00:06 as ** along with 4 people dgront sikorski qwermish iantunbridge
  • Statistical errors in histogram reweighting
    Physical Review E, Vol. 51, No. 5. (May 1995), 5092.
    by Alan M Ferrenberg, DP Landau, Robert H Swendsen
    posted to monte_carlo multihistogram by rabio on 2007-02-13 13:26:52 as ** along with 1 person dgront
  • A new approach to Monte Carlo simulations in statistical physics: Wang-Landau sampling
    American Journal of Physics, Vol. 72, No. 10. (2004), pp. 1294-1302.
    by DP Landau, Shan H Tsai, M Exler
    posted to monte_carlo multicanonical_ensemble wang-landau_sampling by rabio on 2007-02-13 13:22:45 as read along with 3 people pcarbo dgront softsimu
  • Wang-Landau Multibondic Cluster Simulations for Second-Order Phase Transitions
    Physical Review Letters, Vol. 98, No. 4. (22 January 2007)
    by Bernd A Berg, Wolfhard Janke
    posted to monte_carlo multicanonical_ensemble phase_transition wang-landau_sampling by rabio on 2007-02-13 13:15:16 as ** along with 1 person softsimu
  • Efficient, multiple-range random walk algorithm to calculate the density of states
    Physical Review Letters, Vol. 86, No. 10. (5 March 2001), pp. 2050-2053.
    by Fugao Wang, DP Landau
    posted to lattice_models monte_carlo multicanonical_ensemble wang-landau_sampling by rabio on 2007-01-29 18:28:57 as read along with 1 person dgront
  • Monte Carlo studies of the thermodynamics and kinetics of reduced protein models: Application to small helical, beta, and alpha/beta proteins
    The Journal of Chemical Physics, Vol. 108, No. 6. (1998), pp. 2608-2617.
    by Andrzej Kolinski, Wojciech Galazka, Jeffrey Skolnick
    posted to entropy_sampling lattice_models monte_carlo protein_kinetics protein_thermodynamics by rabio on 2006-12-29 12:32:50 as **
  • Prediction of Peptide Conformation by Multicanonical Algorithm: A New Approach to the Multiple-Minima Problem
    (25 January 1993)
    by Ulrich HE Hansmann, Yuko Okamoto
    posted to lattice_models monte_carlo multicanonical_ensemble strutcture_prediction by rabio on 2006-12-29 12:19:53 as **
  • De Novo Simulations of the Folding Thermodynamics of the GCN4 Leucine Zipper
    Biophysical Journal, Vol. 77, No. 1. (July 1999), pp. 54-69.
    by Debasisa Mohanty, Andrzej Kolinski, Jeffrey Skolnick
    posted to entropy_sampling lattice_models monte_carlo multicanonical_ensemble protein_folding protein_thermodynamics reduced_models by rabio on 2006-12-28 11:48:08 as **
  • Optimized Monte Carlo data analysis
    Physical Review Letters, Vol. 63, No. 12. (18 September 1989), pp. 1195-1198.
    by Alan M Ferrenberg, Robert H Swendsen
    posted to histograms monte_carlo by rabio on 2006-12-28 11:23:51 as **
  • notes New Monte Carlo technique for studying phase transitions
    Physical Review Letters, Vol. 61, No. 23. (Dec 1988), pp. 2635-2638.
    by Alan M Ferrenberg, Robert H Swendsen
    posted to histograms ising_model monte_carlo phase_transition protein_thermodynamics by rabio on 2006-12-28 10:46:56 as **
  • Monte Carlo Simulation of a First-Order Transition for Protein Folding
    The Journal of Physical Chemistry, Vol. 98, No. 18. (1994), pp. 4940-4948.
    by Ming H Hao, Harold A Scheraga
    posted to entropy_sampling monte_carlo multicanonical_ensemble protein_folding protein_thermodynamics reduced_models strutcture_prediction by rabio on 2006-12-15 12:04:34 as read
  • Statistical thermodynamics of protein folding: sequence dependence
    The Journal of Physical Chemistry, Vol. 98, No. 39. (29 September 1994), pp. 9882-9893.
    by Ming H Hao, Harold A Scheraga
    posted to entropy_sampling monte_carlo multicanonical_ensemble protein_folding protein_thermodynamics reduced_models by rabio on 2006-12-11 15:22:58 as read
  • Statistical thermodynamics of protein folding: Comparison of a mean-field theory with Monte Carlo simulations
    The Journal of Chemical Physics, Vol. 102, No. 3. (1995), pp. 1334-1348.
    by Ming H Hao, Harold A Scheraga
    posted to entropy_sampling force_field mean-field monte_carlo multicanonical_ensemble protein_folding protein_thermodynamics reduced_models review strutcture_prediction by rabio on 2006-12-11 14:36:54 as read
  • New Monte Carlo algorithms for protein folding
    Current Opinion in Structural Biology, Vol. 9, No. 2. (April 1999), pp. 177-183.
    by UH Hansmann, Y Okamoto
    posted to monte_carlo protein_folding review strutcture_prediction by rabio on 2006-12-11 14:32:21 as read along with 4 people dgront insectopalo iantunbridge nigham
  • Reduced models of proteins and their applications
    Polymer, Vol. 45, No. 2. (January 2004), pp. 511-524.
    by Andrzej Kolinski, Jeffrey Skolnick
    posted to cabs continuous_moodels lattice_models monte_carlo reduced_models review rosetta sicho strutcture_prediction unres by rabio on 2006-12-11 13:01:23 as read along with 1 person iantunbridge
  • Protein structure prediction by tempering spatial constraints
    Journal of Computer-Aided Molecular Design, Vol. 19, No. 8. (August 2005), pp. 603-608.
    by Dominik Gront, Andrzej Kolinski, Ulrich Hansmann
    posted to monte_carlo replica_method strutcture_prediction by rabio on 2006-12-10 22:24:04 as read
  • A new combination of replica exchange Monte Carlo and histogram analysis for protein folding and thermodynamics
    The Journal of Chemical Physics, Vol. 115, No. 3. (2001), pp. 1569-1574.
    by Dominik Gront, Andrzej Kolinski, Jeffrey Skolnick
    posted to monte_carlo multihistogram by rabio on 2006-12-01 11:57:09 as read along with 2 people dgront sikorski
  • Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures
    The Journal of Chemical Physics, Vol. 113, No. 12. (2000), pp. 5065-5071.
    by Dominik Gront, Andrzej Kolinski, Jeffrey Skolnick
    posted to monte_carlo replica_method by rabio on 2006-12-01 11:53:36 as read along with 2 people dgront sikorski
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