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ptrobajo pathways [27 articles]

最近 ptrobajo さんのライブラリに追加された論文の中から タグ pathways. You can also see everyone's pathways.
  • SLEPR: A Sample-Level Enrichment-Based Pathway Ranking Method — Seeking Biological Themes through Pathway-Level Consistency
    PLoS ONE, Vol. 3, No. 9. (2008), e3288.
    by Ming Yi, Robert M Stephens
    posted to sample pathways geneset enrichment differential by ptrobajo on 2008-10-10 21:28:47 as **
  • A critical examination of stoichiometric and path-finding approaches to metabolic pathways
    Brief Bioinform (24 April 2008), bbn018.
    by Francisco J Planes, John E Beasley
    posted to stoichiometry pathways miranda metabolic graph by ptrobajo on 2008-10-08 23:25:50 as ** along with 2 people renatomilani shung
  • Presenting and exploring biological pathways with PathVisio
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Martijn van Iersel, Thomas Kelder, Alexander Pico, Kristina Hanspers, Susan Coort, Bruce Conklin, Chris Evelo
    posted to visualization pathways pathvisio biorange by ptrobajo on 2008-10-06 08:49:02 as ** along with 3 people and 1 group AlexanderPico renatomilani thomaskelder ConklinLab
  • Testing gene set enrichment for subset of genes:Sub-GSE
    BMC Bioinformatics, Vol. 9 (02 September 2008), 362.
    by Xiting Yan, Fengzhu Sun
    posted to pathways geneset expression enrichment differential by ptrobajo on 2008-10-01 09:14:40 as ** along with 4 people trevinor ealloza barriot paszkows
  • Predicting Pathway Membership via Domain Signatures
    Bioinformatics (1 August 2008), btn403.
    by Holger Frohlich, Mark Fellmann, Holger Sultmann, Annemarie Poustka, Tim Beissbarth
    posted to protein pathways miranda domain by ptrobajo on 2008-09-27 20:56:26 as ** along with 4 people barriot mdstobbe phoenixzxl jyuh
  • The public road to high-quality curated biological pathways.
    Drug discovery today (21 July 2008)
    by Michiel E E Adriaens, Magali Jaillard, Andra Waagmeester, Susan L M L Coort, Alex R R Pico, Chris T A T Evelo
    posted to workflow pathways curation biorange-matching by ptrobajo on 2008-09-17 10:26:00 as ** along with 4 people jfr thomaskelder AlexanderPico jyuh
  • Bayesian network analysis of signaling networks: a primer.
    Sci STKE, Vol. 2005, No. 281. (26 April 2005)
    by D Pe'er
    posted to signaling pathways networks education bayesian by ptrobajo on 2008-09-15 20:40:21 as ** along with 6 people saman_vp tmmurali Borelli ryang wnpx jhatrimatri
  • Interferon-beta Signaling Is Enhanced in Patients With Insufficient Coronary Collateral Artery Development and Inhibits Arteriogenesis in Mice.
    Circulation research (17 April 2008)
    by Stephan H H Schirmer, Joost O O Fledderus, Pieter T G T Bot, Perry D D Moerland, Imo E E Hoefer, Jan Baan, José P S P Henriques, René J J van der Schaaf, Marije M M Vis, Anton J G J Horrevoets, Jan J J Piek, Niels van Royen
    posted to sp124 pathways biorange-matching by ptrobajo on 2008-09-10 11:16:36 as ** along with 1 person thmt
  • WikiPathways: Pathway Editing for the People
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e184.
    by Alexander R Pico, Thomas Kelder, Martijn P van Iersel, Kristina Hanspers, Bruce R Conklin, Chris Evelo
    posted to wikipathways sp124 pathways biorange by ptrobajo on 2008-09-10 10:53:22 as ** along with 14 people and 2 groups chad_davis jyuh psique cerami AlexanderPico thomaskelder iBartomeus renatomilani ajaymalik jarredmccaffrey laurianw dullhunk amarois tharris ConklinLab behavior_flexibility
  • Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models
    BMC Bioinformatics, Vol. 9 (24 June 2008), 292.
    by Dawei Liu, Debashis Ghosh, Xihong Lin
    posted to pathways kernel geneset by ptrobajo on 2008-07-11 14:44:27 as ** along with 2 people jfr dolchan
  • An Integrated Approach for the Analysis of Biological Pathways using Mixed Models
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000115.
    by Lily Wang, Bing Zhang, Russell D Wolfinger, Xi Chen
    posted to test pathways model mixed geneset by ptrobajo on 2008-07-07 19:46:11 as ** along with 3 people roys aviad_work inesdesantiago
  • Quantitative evidence for conserved longevity pathways between divergent eukaryotic species
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 564-570.
    by Erica D Smith, Mitsuhiro Tsuchiya, Lindsay A Fox, Nick Dang, Di Hu, Emily O Kerr, Elijah D Johnston, Bie N Tchao, Diana N Pak, Linnea K Welton, Daniel E Promislow, James H Thomas, Matt Kaeberlein, Brian K Kennedy
    posted to age cross-species pathways by ptrobajo on 2008-06-18 13:49:43 as ** along with 3 people and 1 group tharris tmmurali wilbur C. elegans / WormBase
  • Gene-expression of metastasized versus non-metastasized primary head and neck squamous cell carcinomas: a pathway-based analysis
    BMC Cancer, Vol. 8 (10 June 2008), 168.
    by Erik F Hensen, Maria J De Herdt, Jelle J Goeman, Jan Oosting, Vincent THBM Smit, Cees J Cornelisse, Robert
    posted to roepman pathways geneset by ptrobajo on 2008-06-18 13:34:42 as **
  • Exploiting the pathway structure of metabolism to reveal high-order epistasis.
    BMC systems biology, Vol. 2 (2008)
    by M Imielinski, C Belta
    posted to pathways metabolism knockout epistasis by ptrobajo on 2008-06-18 12:35:46 as ** along with 1 person jyuh
  • A functional and regulatory map of asthma.
    American journal of respiratory cell and molecular biology, Vol. 38, No. 3. (March 2008), pp. 324-336.
    by N Novershtern, Z Itzhaki, O Manor, N Friedman, N Kaminski
    posted to asthma module mouse pathways regulatory by ptrobajo on 2008-06-18 08:31:28 as **
  • A peroxisomal acyltransferase in mouse identifies a novel pathway for taurine conjugation of fatty acids.
    The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 21, No. 1. (January 2007), pp. 99-107.
    by SJ Reilly, EM O'Shea, U Andersson, J O'Byrne, SE Alexson, MC Hunt
    posted to protein peroxisome pathways mouse by ptrobajo on 2008-05-05 22:06:37 as **
  • Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis
    Genome Biology, Vol. 8 (11 May 2007), R77.
    by Yingchun Liu, Markus Ringner
    posted to set pathways motif microarray gene by ptrobajo on 2008-05-05 21:41:16 as ** along with 1 person jfr
  • metaSHARK: a WWW platform for interactive exploration of metabolic networks.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by C Hyland, JW Pinney, GA McConkey, DR Westhead
    posted to pathways network miranda metabolic by ptrobajo on 2008-04-29 11:07:17 as **
  • Canonical and alternative MAPK signaling.
    Cell cycle (Georgetown, Tex.), Vol. 6, No. 21. (August 2007), pp. 2628-2632.
    by G Pimienta, J Pascual
    posted to signaling pathways mapk by ptrobajo on 2008-04-05 22:25:11 as **
  • Network-constrained Regularization and Variable Selection for Analysis of Genomic Data.
    Bioinformatics (1 March 2008)
    by Caiyan Li, Hongzhe Li
    posted to differential expression network pathways by ptrobajo on 2008-03-31 00:01:13 as ** along with 2 people jyuh verdicchio
  • Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3170-3177.
    by Feng Tai, Wei Pan
    posted to classification geneset pathways regularization by ptrobajo on 2008-03-31 00:00:17 as ** along with 1 person jyuh
  • A Markov Random Field Model for Network-based Analysis of Genomic Data.
    Bioinformatics (5 May 2007)
    by Zhi Wei, Hongzhe Li
    posted to differential expression geneset pathways by ptrobajo on 2008-03-30 23:51:28 as ** along with 2 people wnpx iris_2001
  • Pathway analysis using random forests classification and regression.
    Bioinformatics (29 June 2006)
    by Herbert Pang, Aiping Lin, Matthew Holford, Bradley E E Enerson, Bin Lu, Michael P P Lawton, Eugenia Floyd, Hongyu Zhao
    posted to classification forest geneset pathways random by ptrobajo on 2008-03-30 23:48:11 as ** along with 5 people and 2 groups jfr tabu ealloza giovanni AlexanderPico BioinfoCIPF GeschwindLab
  • Group additive regression models for genomic data analysis.
    Biostatistics (18 May 2007)
    by Yihui Luan, Hongzhe Li
    posted to boosting geneset pathways by ptrobajo on 2008-03-30 23:46:06 as ** along with 1 person jfr
  • Group testing for pathway analysis improves comparability of different microarray data sets.
    Bioinformatics (7 August 2006)
    by Theodora Manoli, Norbert Gretz, Hermann-Josef J Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors
    posted to differential expression geneset microarray pathways by ptrobajo on 2008-03-30 23:35:18 as ** along with 4 people and 1 group jfr ealloza jdiggans macavity1g BioinfoCIPF
  • Nonparametric pathway-based regression models for analysis of genomic data.
    Biostatistics (13 June 2006)
    by Zhi Wei, Hongzhe Li
    posted to boosting geneset pathways by ptrobajo on 2008-03-30 23:32:23 as ** along with 3 people jfr macavity1g waghsk
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to classification geneset interaction network pathways protein by ptrobajo on 2008-03-30 23:16:40 as *** along with 18 people and 2 groups winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys dap5087 saman_vp verdicchio Bioinformatics GeneGo
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