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pradiptaray evolution [53 articles]

最近 pradiptaray さんのライブラリに追加された論文の中から タグ evolution. You can also see everyone's evolution.
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to crm evolution primate selection by pradiptaray on 2008-08-15 21:51:51 as ** along with 7 people and 2 groups alhufton djkt bpcusack aprasad caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
  • Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins.
    Developmental biology, Vol. 315, No. 2. (15 March 2008), pp. 567-578.
    by J Walters, E Binkley, R Haygood, LA Romano
    posted to crm evolution motif purpuratus regulation sea sm50 tfbs urchin by pradiptaray on 2008-08-07 16:38:42 as ** along with 1 person emptyhb
  • Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites — PNAS
    PNAS, Vol. 102, No. 24. (June 2005), pp. 8591-8596.
    by JP Balhoff, Gregory A Wray
    posted to crm endo16 evolution motif purpuratus sea tfbs urchin by pradiptaray on 2008-08-07 16:36:47 as **
  • Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans.
    Genetics, Vol. 167, No. 2. (June 2004), pp. 867-877.
    by MW Hahn, MV Rockman, N Soranzo, DB Goldstein, GA Wray
    posted to evolution genetics human population regulation selection species by pradiptaray on 2008-08-07 16:17:06 as ** along with 2 people and 1 group cisevol balicea cis-regulatory-evolution
  • DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e61.
    by Shaun Mahony, Philip E Auron, Panayiotis V Benos
    posted to evolution motif pwm regulation specificity by pradiptaray on 2008-08-07 16:12:34 as ** along with 4 people aalibes zwang nklee heliopais
  • Inferring the Demographic History and Rate of Adaptive Substitution in Drosophila
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e166.
    by Haipeng Li, Wolfgang Stephan
    posted to drosophila evolution phylogeography selection by pradiptaray on 2008-07-16 18:03:20 as ** along with 1 person jri
  • Gene Duplication and Adaptive Evolution of Digestive Proteases in Drosophila arizonae Female Reproductive Tracts
    PLoS Genet, Vol. 3, No. 8. (2007), e148.
    by Erin S Kelleher, Willie J Swanson, Therese A Markow
    posted to arizonae drosophila duplication evolution selection by pradiptaray on 2008-07-16 16:55:47 as **
  • Rampant Adaptive Evolution in Regions of Proteins with Unknown Function in Drosophila simulans.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by AK Holloway, DJ Begun
    posted to drosophila evolution selection simulans snp by pradiptaray on 2008-07-16 16:51:39 as ** along with 1 person and 1 group stajich EisenLab
  • Sex chromosomes and speciation in Drosophila
    Trends in Genetics, Vol. 24, No. 7. (July 2008), pp. 336-343.
    by Daven C Presgraves
    posted to drosophila evolution speciation by pradiptaray on 2008-07-01 17:11:35 as ** along with 2 people and 1 group stajich bpcusack Berkeley Mycology
  • Ancient single origin for Malagasy primates
    Proceedings of the National Academy of Sciences USA, Vol. 93 (1996), pp. 5122-5126.
    by AD Yoder, M Cartmill, Maryellen Ruvolo, K Smith, R Vilgalys
    posted to evolution malagasy primate by pradiptaray on 2008-07-01 17:08:35 as ** along with 1 group FAB-lab
  • A Mathematical Theory of Evolution, based on the Conclusions of Dr. J. C. Willis, F.R.S.
    Philosophical Transactions of the Royal Society of London Series B, Vol. 213 (1925), pp. 21-87.
    by Udny G Yule
    posted to evolution first mathematical theory by pradiptaray on 2008-07-01 17:07:58 as ** along with 1 group FAB-lab
  • Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.
    Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487.
    by N Gompel, B Prud'homme, PJ Wittkopp, VA Kassner, SB Carroll
    posted to crm drosophila evolution by pradiptaray on 2008-07-01 17:05:45 as ** along with 5 people and 2 groups dpollard emilyhare adepace cisevol emptyhb EisenLab cis-regulatory-evolution
  • Evidence from milk casein genes that cetaceans are close relatives of hippopotamid artiodactyls.
    Mol Biol Evol, Vol. 13, No. 7. (September 1996), pp. 954-963.
    by J Gatesy, C Hayashi, MA Cronin, P Arctander
    posted to cetacea evolution hippopotamus whale by pradiptaray on 2008-07-01 17:05:07 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • [Reconstruction of ancestral regulatory signals along a transcription factor tree]
    Molekuliarnaia biologiia, Vol. 41, No. 5. (t 2007), pp. 918-925.
    by KIu Gorbunov, VA Liubetskiĭĭ
    posted to ancestor crm evolution grn by pradiptaray on 2008-07-01 17:02:01 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • RECONSTRUCTING THE EVOLUTION OF COMPLEX BIRD SONG IN THE OROPENDOLAS
    Evolution, Vol. 56, No. 7. (2002), pp. 1514-1529.
    by Price, Scott M Lanyon
    posted to birdsong evolution by pradiptaray on 2008-07-01 16:53:45 as ** along with 2 people darbuthnott rhyss
  • Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster
    Genetics, Vol. 179, No. 1. (1 May 2008), pp. 455-473.
    by Thomas L Turner, Mia T Levine, Melissa L Eckert, David J Begun
    posted to evolution melanogaster selection by pradiptaray on 2008-07-01 16:52:13 as ** along with 1 person and 2 groups stajich Berkeley Mycology EisenLab
  • Vav proteins, masters of the world of cytoskeleton organization
    Cellular Signalling, Vol. 16, No. 1. (January 2004), pp. 1-11.
    by Idit Hornstein, Andres Alcover, Shulamit Katzav
    posted to body cytoskeleton evolution plan selection signalling vav by pradiptaray on 2008-07-01 16:48:19 as ** along with 1 person and 1 group jwestbrook King_Lab
  • The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches
    Nature, Vol. 442, No. 7102., pp. 563-567.
    by Arhat Abzhanov, Winston P Kuo, Christine Hartmann, Rosemary B Grant, Peter R Grant, Clifford J Tabin
    posted to darwin evolution finch pathway selection signalling by pradiptaray on 2008-07-01 16:47:36 as ** along with 1 person and 1 group jwestbrook King_Lab
  • Bmp4 and Morphological Variation of Beaks in Darwin's Finches
    Science, Vol. 305, No. 5689. (3 September 2004), pp. 1462-1465.
    by Arhat Abzhanov, Meredith Protas, Rosemary B Grant, Peter R Grant, Clifford J Tabin
    posted to bmp4 darwin evolution finch selection by pradiptaray on 2008-07-01 16:46:46 as ** along with 1 person and 1 group jwestbrook King_Lab
  • Mobile DNA elements in primate and human evolution
    American Journal of Physical Anthropology, Vol. 134, No. S45. (2007), pp. 2-19.
    by Jinchuan Xing, David J Witherspoon, David A Ray, Mark A Batzer, Lynn B Jorde
    posted to evolution human mobile primate by pradiptaray on 2008-07-01 16:40:25 as ** along with 4 people and 1 group dchughes timflutre ryanraaum urgi BergmanLab
  • Transposable elements as tools for genomics and genetics in Drosophila
    Brief Funct Genomic Proteomic, Vol. 2, No. 1. (1 January 2003), pp. 57-71.
    by Edward Ryder, Steven Russell
    posted to drosophila elements evolution transposable transposon by pradiptaray on 2008-07-01 16:39:26 as ** along with 3 people and 1 group RMGraze yulian2108 cisevol BergmanLab
  • Alternative splicing and RNA selection pressure — evolutionary consequences for eukaryotic genomes
    Nature Reviews Genetics, Vol. 7, No. 7. (13 June 2006), pp. 499-509.
    by Yi Xing, Christopher Lee
    posted to evolution mrna selection splicing by pradiptaray on 2008-07-01 16:35:35 as ** along with 4 people and 2 groups inesdesantiago eoghanharr jwestbrook paulcartwright King_Lab BergmanLab
  • Birth and death of gene overlaps in vertebrates
    BMC Evolutionary Biology, Vol. 7 (16 October 2007), 193.
    by Izabela Makalowska, Chiao-Feng Lin, Kristina Hernandez
    posted to evolution gene overlap vertebrate by pradiptaray on 2008-07-01 16:34:58 as ** along with 1 person and 1 group cisevol BergmanLab
  • Transposable elements and the evolution of regulatory networks.
    Nat Rev Genet (27 March 2008)
    by Cédric Feschotte
    posted to evolution grn by pradiptaray on 2008-07-01 16:33:37 as ** along with 8 people and 1 group djkt bootsy idonaldson cmzmasek smbe2008 eskay roys timflutre BergmanLab
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to crm evolution rate by pradiptaray on 2008-07-01 16:31:59 as ** along with 2 people and 2 groups cisevol bryankr BergmanLab cis-regulatory-evolution
  • Mitochondrial and chloroplast phylogeography of Picea crassifolia Kom. (Pinaceae) in the Qinghai-Tibetan Plateau and adjacent highlands
    Molecular Ecology, Vol. 16, No. 19. (2007), pp. 4128-4137.
    by Lihua Meng, RUI Yang, Richard J Abbott, Georg Miehe, Tianhua Hu, Jianquan Liu
    posted to chloroplast evolution microsatellite phylogeography picea by pradiptaray on 2008-07-01 16:20:46 as ** along with 1 person yife
  • Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum
    Nature, Vol. 418, No. 6895. (18 July 2002), pp. 320-323.
    by John C Wootton, Xiaorong Feng, Michael T Ferdig, Roland A Cooper, Jianbing Mu, Dror I Baruch, Alan J Magill, Xin-Zhuan Su
    posted to evolution plasmodium selection by pradiptaray on 2008-07-01 16:17:56 as ** along with 2 people ausiddiqui yife
  • Directional selection is the primary cause of phenotypic diversification.
    Proc Natl Acad Sci U S A, Vol. 99, No. 19. (17 September 2002), pp. 12242-12245.
    by LH Rieseberg, A Widmer, AM Arntz, JM Burke
    posted to evolution selection by pradiptaray on 2008-07-01 16:16:43 as ** along with 3 people and 1 group stevanspringer qwermish yife FAB-lab
  • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    Nature, Vol. 415, No. 6875. (28 February 2002), pp. 1024-1026.
    by Justin C Fay, Gerald J Wyckoff, Chung-I Wu
    posted to drosophila evolution selection by pradiptaray on 2008-07-01 16:15:49 as ** along with 2 people yife skumagai
  • Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus
    Biology Direct, Vol. 1 (26 October 2006), 34.
    by Yuri I Wolf, Cecile Viboud, Edward C Holmes, Eugene V Koonin, David J Lipman
    posted to evolution influenza rate by pradiptaray on 2008-07-01 06:50:58 as ** along with 1 person bpb
  • Maximum-likelihood phylogenetic analysis under a covarion-like model
    Mol. Biol. Evol., Vol. 18, No. 5. (2001), pp. 866-873.
    by N Galtier
    posted to coevolution evolution phylogeny by pradiptaray on 2008-07-01 06:50:14 as ** along with 2 people operon bpb
  • Evolutionary game theory in an agent-based brain tumor model: exploring the 'Genotype-Phenotype' link.
    J Theor Biol, Vol. 238, No. 1. (7 January 2006), pp. 146-156.
    by Y Mansury, M Diggory, TS Deisboeck
    posted to evolution game_theory by pradiptaray on 2008-07-01 06:49:36 as ** along with 2 people bpb mhucka
  • More genes underwent positive selection in chimpanzee evolution than in human evolution.
    Proc Natl Acad Sci U S A, Vol. 104, No. 18. (1 May 2007), pp. 7489-7494.
    by MA Bakewell, P Shi, J Zhang
    posted to chimpanzee evolution human primate selection by pradiptaray on 2008-07-01 06:48:12 as ** along with 4 people and 1 group bpb usagi-kirin Garamonfok rvosa FAB-lab
  • Rates of molecular evolution of primates
    Genetika, Vol. 39, No. 7. (2003), pp. 869-887.
    by Tetushkin
    posted to evolution human phylogeny primate rate by pradiptaray on 2008-07-01 06:46:12 as ** along with 1 person bpb
  • Context dependence, ancestral misidentification, and spurious signatures of natural selection
    Mol. Biol. Evol., Vol. 24, No. 8. (2007), pp. 1792-1800.
    by RD Hernandez, SH Williamson, CD Bustamante
    posted to ancestor evolution misidentification selection snp spurious by pradiptaray on 2008-07-01 06:45:09 as ** along with 2 people bpb djkt
  • Population Genetics of Polymorphism and Divergence
    Genetics, Vol. 132, No. 4. (1 December 1992), pp. 1161-1176.
    by SA Sawyer, DL Hartl
    posted to evolution selection snp by pradiptaray on 2008-07-01 06:44:05 as ** along with 3 people bpb djkt emptyhb
  • Adaptive evolution of non-coding DNA in Drosophila
    Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152.
    by Peter Andolfatto
    posted to drosophila evolution noncoding selection by pradiptaray on 2008-07-01 02:18:12 as ** along with 12 people and 4 groups stevanspringer bpb aprasad jmeppley balicea jimmithy emilyhare cdawson adepace Stew mimulus_99 cisevol EisenLab FAB-lab GIG cis-regulatory-evolution
  • Widely distributed noncoding purifying selection in the human genome
    PNAS (17 July 2007), 0705140104.
    by Saurabh Asthana, William S Noble, Gregory Kryukov, Charles E Grant, Shamil Sunyaev, John A Stamatoyannopoulos
    posted to evolution human selection by pradiptaray on 2008-07-01 02:17:37 as ** along with 6 people and 1 group bpb cabbagezs mimulus_99 cisevol bpcusack fernan cis-regulatory-evolution
  • Adaptive protein evolution at the Adh locus in Drosophila
    Nature, Vol. 351, No. 6328. (20 June 1991), pp. 652-654.
    by John H Mcdonald, Martin Kreitman
    posted to adh drosophila evolution kreitman selection test by pradiptaray on 2008-07-01 02:16:17 as ** along with 6 people cap1 bpb RMGraze brant Garamonfok Stew
  • Modified Hudson-Kreitman-Aguade test and two-dimensional evaluation of neutrality tests.
    Genetics, Vol. 173, No. 3. (July 2006), pp. 1725-1733.
    by H Innan
    posted to evolution kreitman selection test by pradiptaray on 2008-07-01 02:15:31 as ** along with 2 people bpb stajich
  • Forces shaping the fastest evolving regions in the human genome.
    PLoS Genet, Vol. 2, No. 10. (13 October 2006)
    by KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, JS Pedersen, G Bejerano, R Baertsch, KR Rosenbloom, J Kent, D Haussler
    posted to evolution genomics human selection by pradiptaray on 2008-07-01 02:12:32 as ** along with 3 people bpb tuck rrhudson
  • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
    Genetics, Vol. 123, No. 3. (November 1989), pp. 585-595.
    by F Tajima
    posted to evolution selection snp test by pradiptaray on 2008-07-01 02:10:46 as ** along with 2 people bjorns bpb
  • Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 8005-8010.
    by Craig B Lowe, Gill Bejerano, David Haussler
    posted to crm evolution human selection by pradiptaray on 2008-07-01 02:10:09 as ** along with 3 people and 1 group bpb cisevol FMoncini cis-regulatory-evolution
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to evolution insect selection ultraconserved vertebrate worm yeast by pradiptaray on 2008-07-01 02:09:00 as ** along with 16 people and 4 groups tharris bpb aprasad balajis eckart_bindewald indigoviolet brant adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
  • A Space-Time Process Model for the Evolution of DNA Sequences
    Genetics, Vol. 139, No. 2. (1 February 1995), pp. 993-1005.
    by Z Yang
    posted to evolution hmm phylogeny by pradiptaray on 2008-07-01 02:07:40 as ** along with 3 people bpb tale friendpine
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to alignment evolution human selection ultraconservation by pradiptaray on 2008-07-01 02:06:59 as ** along with 15 people and 5 groups Ema carlfulp karbak barry ujh alexisgallagher bpb aprasad balicea dchughes djkt sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
  • COMPARATIVE GENOMICS AT THE VERTEBRATE EXTREMES
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465.
    by Dario Boffelli, Marcelo A Nobrega, Edward M Rubin
    posted to comparative evolution extremes genomics vertebrate by pradiptaray on 2008-07-01 02:06:18 as ** along with 1 person bpb
  • A Long-Term Evolutionary Pressure on the Amount of Non-Coding DNA.
    Mol Biol Evol (19 August 2007)
    by Carole Knibbe, Antoine Coulon, Olivier Mazet, Jean-Michel M Fayard, Guillaume Beslon
    posted to evolution noncoding selection by pradiptaray on 2008-07-01 02:05:15 as ** along with 5 people and 2 groups operon bpb aprasad cisevol coldmeadow cis-regulatory-evolution BergmanLab
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to evolution genomics human selection by pradiptaray on 2008-07-01 02:04:43 as ** along with 20 people and 7 groups stevanspringer kentsis bpb balajis indigoviolet ejeffery madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan shoshin iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • Molecular signatures of natural selection.
    Annual Review in Genetics, Vol. 39 (2005), pp. 197-218.
    by R Nielsen
    posted to evolution selection by pradiptaray on 2008-07-01 01:59:09 as ** along with 7 people operon bpb eckart_bindewald timflutre dmc BioNica jasonflannick
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