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opheliav library [49 articles]

最近 opheliav さんのライブラリ .
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to no-tag by opheliav on 2005-11-15 06:20:09 as ** along with 10 people and 3 groups snuppepuppan BioGeek dragonrez bpb okarsligil wnpx gurkanbebek raiyar thomaskelder shikin Bioinformatics steinmetzlab GeneGo
  • Co-evolution of proteins with their interaction partners.
    J Mol Biol, Vol. 299, No. 2. (2 June 2000), pp. 283-293.
    by CS Goh, AA Bogan, M Joachimiak, D Walther, FE Cohen
    posted to no-tag by opheliav on 2005-11-15 06:18:00 as ** along with 1 person cjeans
  • Inferring cellular networks using probabilistic graphical models.
    Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805.
    by N Friedman
    posted to no-tag by opheliav on 2005-11-15 06:12:12 as ** along with 16 people and 1 group ldfu ujh lfriedl ryang wnpx nirfriedman neveaire koller helsley dimatura edwardmorrissey vietanh0 Yumyai srp33 saman_vp jo_davies kdl
  • A genome-wide transcriptional analysis of the mitotic cell cycle.
    Mol Cell, Vol. 2, No. 1. (July 1998), pp. 65-73.
    by RJ Cho, MJ Campbell, EA Winzeler, L Steinmetz, A Conway, L Wodicka, TG Wolfsberg, AE Gabrielian, D Landsman, DJ Lockhart, RW Davis
    posted to no-tag by opheliav on 2005-11-15 06:11:46 as ** along with 2 people and 1 group lfriedl echsberde kdl
  • Prolinks: a database of protein functional linkages derived from coevolution.
    Genome Biol, Vol. 5, No. 5. (2004)
    by PM Bowers, M Pellegrini, MJ Thompson, J Fierro, TO Yeates, D Eisenberg
    posted to no-tag by opheliav on 2005-11-15 06:11:28 as ** along with 6 people and 1 group pcahan1 lfriedl balajis tny sanchezbuelna chasmand kdl
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to no-tag by opheliav on 2005-11-15 06:06:29 as ** along with 13 people and 2 groups okarsligil lfriedl balajis maryee wnpx mbeautru eukfn grahamc nedwards brianb iris_2001 carlk phoenixzxl kdl Bioinformatics
  • Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.
    Proc Natl Acad Sci U S A, Vol. 96, No. 8. (13 April 1999), pp. 4285-4288.
    by M Pellegrini, EM Marcotte, MJ Thompson, D Eisenberg, TO Yeates
    posted to no-tag by opheliav on 2005-11-15 06:05:34 as ** along with 9 people and 1 group dragonrez bicko lfriedl balajis tny ruvido winterschlaefer shung carlk kdl
  • Global analysis of protein localization in budding yeast.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691.
    by WK Huh, JV Falvo, LC Gerke, AS Carroll, RW Howson, JS Weissman, EK O'Shea
    posted to no-tag by opheliav on 2005-11-15 06:04:53 as ** along with 9 people and 1 group Cortel lfriedl rebeccahainess nirfriedman hplatero gurkanbebek koller raiyar iris_2001 kdl
  • The KEGG databases at GenomeNet
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 42-46.
    by Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya
    posted to no-tag by opheliav on 2005-11-15 06:04:43 as ** along with 2 people michC dragonrez
  • Detection of functional modules from protein interaction networks.
    Proteins, Vol. 54, No. 1. (1 January 2004), pp. 49-57.
    by JB Pereira-Leal, AJ Enright, CA Ouzounis
    posted to no-tag by opheliav on 2005-11-15 06:02:58 as ** along with 2 people ujh wnpx
  • LGL: creating a map of protein function with an algorithm for visualizing very large biological networks.
    J Mol Biol, Vol. 340, No. 1. (25 June 2004), pp. 179-190.
    by AT Adai, SV Date, S Wieland, EM Marcotte
    posted to no-tag by opheliav on 2005-11-15 06:02:03 as ** along with 3 people mmartin ganden svdate
  • A probabilistic view of gene function.
    Nat Genet, Vol. 36, No. 6. (June 2004), pp. 559-564.
    by AG Fraser, EM Marcotte
    posted to no-tag by opheliav on 2005-11-15 06:00:46 as ** along with 9 people and 1 group snuppepuppan ziquje lfriedl wnpx samal grahamc massivemayhem bootsy vietanh0 kdl
  • Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
    Science, Vol. 285, No. 5428. (30 July 1999), pp. 751-753.
    by Edward M Marcotte, Matteo Pellegrini, Ho-Leung Ng, Danny W Rice, Todd O Yeates, David Eisenberg
    posted to no-tag by opheliav on 2005-11-15 05:58:20 as ** along with 7 people and 1 group lfriedl balajis gurkanbebek ruvido cjeans Evangelia iris_2001 kdl
  • Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147.
    by AC Gavin, M Bösche, R Krause, P Grandi, M Marzioch, A Bauer, J Schultz, JM Rick, AM Michon, CM Cruciat, M Remor, C Höfert, M Schelder, M Brajenovic, H Ruffner, A Merino, K Klein, M Hudak, D Dickson, T Rudi, V Gnau, A Bauch, S Bastuck, B Huhse, C Leutwein, MA Heurtier, RR Copley, A Edelmann, E Querfurth, V Rybin, G Drewes, M Raida, T Bouwmeester, P Bork, B Seraphin, B Kuster, G Neubauer, G Superti-Furga
    posted to no-tag by opheliav on 2005-11-15 05:57:05 as ** along with 17 people and 2 groups adiel baaden dragonrez shivaram helenc lfriedl chad_davis balajis wnpx becarmson raiyar grahamc nicoleq iris_2001 csanford frohike ethkim kdl steinmetzlab
  • Systematic genetic analysis with ordered arrays of yeast deletion mutants.
    Science, Vol. 294, No. 5550. (14 December 2001), pp. 2364-2368.
    by AH Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, M Robinson, S Raghibizadeh, CW Hogue, H Bussey, B Andrews, M Tyers, C Boone
    posted to no-tag by opheliav on 2005-11-15 05:53:44 as ** along with 7 people and 1 group shivaram lfriedl balajis nirfriedman blaine_5 ruvido carlk kdl
  • Systematic identification of pathways that couple cell growth and division in yeast.
    Science, Vol. 297, No. 5580. (19 July 2002), pp. 395-400.
    by P Jorgensen, JL Nishikawa, BJ Breitkreutz, M Tyers
    posted to no-tag by opheliav on 2005-11-15 05:53:37 as ** along with 1 person tmt
  • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Nat Biotechnol, Vol. 20, No. 8. (August 2002), pp. 835-839.
    by XS Liu, DL Brutlag, JS Liu
    posted to no-tag by opheliav on 2005-11-15 05:53:28 as ** along with 4 people troels_marstrand dquest yevishere xili03
  • Inferring domain-domain interactions from protein-protein interactions.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1540-1548.
    by M Deng, S Mehta, F Sun, T Chen
    posted to no-tag by opheliav on 2005-11-15 05:53:17 as ** along with 7 people maryee wnpx neils Pao-Yang phoenixzxl carlk zdai
  • Comparative analysis of multiple genome-scale data sets.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1564-1573.
    by M Werner-Washburne, B Wylie, K Boyack, E Fuge, J Galbraith, J Weber, G Davidson
    posted to no-tag by opheliav on 2005-11-15 05:53:06 as ** along with 1 person balajis
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to no-tag by opheliav on 2005-11-15 05:52:58 as ** along with 26 people and 2 groups camster snuppepuppan icases forluvoft ggrot alokm samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
  • Predicting protein function from protein/protein interaction data: a probabilistic approach.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by S Letovsky, S Kasif
    posted to no-tag by opheliav on 2005-11-15 05:52:38 as ** along with 3 people and 1 group lfriedl wnpx iris_2001 kdl
  • Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network.
    Genome Res, Vol. 13, No. 2. (February 2003), pp. 244-253.
    by J Förster, I Famili, P Fu, BØ Palsson, J Nielsen
    posted to no-tag by opheliav on 2005-11-15 05:52:30 as ** along with 7 people and 3 groups wnpx nirfriedman JeremyZucker bsmagic gcalda jpoyatos edwardmorrissey Bioinformatics bioinplant MetabolicModeling
  • Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms.
    Proc Natl Acad Sci U S A, Vol. 100, No. 6. (18 March 2003), pp. 3351-3356.
    by O Alter, PO Brown, D Botstein
    posted to no-tag by opheliav on 2005-11-15 05:52:23 as ** along with 1 person wnpx
  • Sequencing and comparison of yeast species to identify genes and regulatory elements.
    Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254.
    by M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
    posted to no-tag by opheliav on 2005-11-15 05:52:09 as ** along with 8 people and 4 groups evaf RMGraze balajis dchughes dquest franklin azazello cisevol G4ID Genetics-of-Gambling MBLAB cis-regulatory-evolution
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to no-tag by opheliav on 2005-11-15 05:51:55 as ** along with 17 people and 2 groups BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro wnpx nedwards Evangelia kallberg isimpson carlk srp33 frohike kdl Bioinformatics
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to no-tag by opheliav on 2005-11-15 05:51:46 as ** along with 14 people and 6 groups dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade wnpx neveaire macle raylim lp2 karfunkel vertikalist kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to no-tag by opheliav on 2005-11-15 05:49:05 as ** along with 18 people and 2 groups lfriedl balajis yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
  • Reconciling gene expression data with known genome-scale regulatory network structures.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2423-2434.
    by MJ Herrgård, MW Covert, BØ Palsson
    posted to no-tag by opheliav on 2005-11-15 05:48:51 as ** along with 2 people wnpx tvdbulck
  • A strategy for constructing large protein interaction maps using the yeast two-hybrid system: regulated expression arrays and two-phase mating.
    Genome Res, Vol. 13, No. 12. (December 2003), pp. 2691-2699.
    by J Zhong, H Zhang, CA Stanyon, G Tromp, RL Finley
    posted to no-tag by opheliav on 2005-11-15 05:48:35 as **
  • From gene networks to gene function.
    Genome Res, Vol. 13, No. 12. (December 2003), pp. 2568-2576.
    by T Schlitt, K Palin, J Rung, S Dietmann, M Lappe, E Ukkonen, A Brazma
    posted to no-tag by opheliav on 2005-11-15 05:48:27 as ** along with 2 people and 1 group lfriedl wnpx kdl
  • Global Mapping of the Yeast Genetic Interaction Network
    Science, Vol. 303, No. 5659. (06 February 2004), pp. 808-813.
    by Amy HY Tong, Guillaume Lesage, Gary D Bader, Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F Berriz, Renee L Brost, Michael Chang, Yiqun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L Wong, Lan V Zhang, Hongwei Zhu, Christopher G Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P Roth, Grant W Brown, Brenda Andrews, Howard Bussey, Charles Boone
    posted to no-tag by opheliav on 2005-11-15 05:48:16 as ** along with 19 people and 2 groups ldfu pcahan1 lfriedl lyongu luispedro tabu Chue nirfriedman nickluscombe koller raiyar patrycjam patrycja_missiuro jiny chasmand tresch Takayuki ksiek carlk kdl EBI-regulation
  • Repair-FunMap: a functional database of proteins of the DNA repair systems.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2135-2137.
    by L Wen, JA Feng
    posted to no-tag by opheliav on 2005-11-15 05:48:06 as **
  • The promise of functional genomics: completing the encyclopedia of a cell.
    Curr Opin Microbiol, Vol. 7, No. 5. (October 2004), pp. 546-554.
    by TR Hughes, MD Robinson, N Mitsakakis, M Johnston
    posted to no-tag by opheliav on 2005-11-15 05:47:55 as ** along with 1 person bootsy
  • A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.
    BMC Bioinformatics, Vol. 5 (25 October 2004)
    by Y Liu, H Zhao
    posted to no-tag by opheliav on 2005-11-15 05:43:24 as ** along with 2 people wnpx gurkanbebek
  • A robust toolkit for functional profiling of the yeast genome.
    Mol Cell, Vol. 16, No. 3. (5 November 2004), pp. 487-496.
    by X Pan, DS Yuan, D Xiang, X Wang, S Sookhai-Mahadeo, JS Bader, P Hieter, F Spencer, JD Boeke
    posted to no-tag by opheliav on 2005-11-15 05:43:13 as **
  • Spontaneous mutations in diploid Saccharomyces cerevisiae: more beneficial than expected.
    Genetics, Vol. 168, No. 4. (December 2004), pp. 1817-1825.
    by SB Joseph, DW Hall
    posted to no-tag by opheliav on 2005-11-15 05:42:32 as **
  • Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae.
    Nucleic Acids Res, Vol. 32, No. 21. (2004), pp. 6414-6424.
    by Y Chen, D Xu
    posted to no-tag by opheliav on 2005-11-15 05:42:17 as ** along with 3 people and 2 groups okarsligil lfriedl balajis kdl Bioinformatics
  • Accurate multiplex gene synthesis from programmable DNA microchips
    Nature, Vol. 432, No. 7020. (23 December 2004), pp. 1050-1054.
    by Jingdong Tian, Hui Gong, Nijing Sheng, Xiaochuan Zhou, Erdogan Gulari, Xiaolian Gao, George Church
    posted to no-tag by opheliav on 2005-11-15 05:42:07 as ** along with 3 people rklancer mmt stsaft
  • Use of Logic Relationships to Decipher Protein Network Organization
    Science, Vol. 306, No. 5705. (24 December 2004), pp. 2246-2249.
    by Peter M Bowers, Shawn J Cokus, David Eisenberg, Todd O Yeates
    posted to no-tag by opheliav on 2005-11-15 05:41:52 as ** along with 3 people and 1 group mdimmic lfriedl wnpx kdl
  • The topological relationship between the large-scale attributes and local interaction patterns of complex networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 52. (28 December 2004), pp. 17940-17945.
    by A Vázquez, R Dobrin, D Sergi, JP Eckmann, ZN Oltvai, AL Barabási
    posted to no-tag by opheliav on 2005-11-15 05:41:31 as ** along with 3 people and 4 groups yish ddahlem iris_2001 mathgamespatterns dtl vds-arg eni
  • Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A, Vol. 101, No. 52. (28 December 2004), pp. 18006-18011.
    by MR Said, TJ Begley, AV Oppenheim, DA Lauffenburger, LD Samson
    posted to no-tag by opheliav on 2005-11-15 05:39:26 as ** along with 1 person and 1 group cdppublications CDP
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to no-tag by opheliav on 2005-11-15 05:39:07 as ** along with 16 people and 3 groups setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc kdl Bioinformatics generif_paper
  • Exploring functional relationships between components of the gene expression machinery.
    Nat Struct Mol Biol, Vol. 12, No. 2. (February 2005), pp. 175-182.
    by T Burckin, R Nagel, Y Mandel-Gutfreund, L Shiue, TA Clark, JL Chong, TH Chang, S Squazzo, G Hartzog, M Ares
    posted to no-tag by opheliav on 2005-11-15 05:38:49 as ** along with 2 people and 1 group balajis xico WetBiology
  • Explore biological pathways from noisy array data by directed acyclic Boolean networks.
    J Comput Biol, Vol. 12, No. 2. (March 2005), pp. 170-185.
    by LM Li, HH Lu
    posted to no-tag by opheliav on 2005-11-15 05:38:33 as ** along with 1 person wnpx
  • Functional genomic analysis of the rates of protein evolution.
    Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5483-5488.
    by DP Wall, AE Hirsh, HB Fraser, J Kumm, G Giaever, MB Eisen, MW Feldman
    posted to no-tag by opheliav on 2005-11-15 05:38:08 as ** along with 5 people and 1 group bjorns balajis penka RamuAnandakrishnan michaelbarton Nie
  • Identifying regulatory subnetworks for a set of genes.
    Mol Cell Proteomics, Vol. 4, No. 5. (May 2005), pp. 683-692.
    by MS Scott, T Perkins, S Bunnell, F Pepin, DY Thomas, M Hallett
    posted to no-tag by opheliav on 2005-11-15 05:35:35 as **
  • Prediction of functional modules based on comparative genome analysis and Gene Ontology application.
    Nucleic Acids Res, Vol. 33, No. 9. (2005), pp. 2822-2837.
    by H Wu, Z Su, F Mao, V Olman, Y Xu
    posted to microbes by opheliav on 2005-11-15 05:35:22 as ** along with 1 person balajis
  • Probabilistic model of the human protein-protein interaction network
    Nature Biotechnology, Vol. 23, No. 8., pp. 951-959.
    by Daniel R Rhodes, Scott A Tomlins, Sooryanarayana Varambally, Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M Chinnaiyan
    posted to human by opheliav on 2005-11-15 05:34:43 as ** along with 12 people and 2 groups kentsis lfriedl balajis wnpx nickluscombe eukfn iris_2001 antonkratz mingzhi maralena phoenixzxl penpen926 kdl EBI-regulation
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to yeast by opheliav on 2005-11-15 05:32:11 as ** along with 14 people and 3 groups irenas lfriedl ccots balajis nuke2005 eweaver nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab kdl EBI-regulation
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