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operon genometrics [31 articles]

最近 operon さんのライブラリに追加された論文の中から タグ genometrics. You can also see everyone's genometrics.
  • The persistence exponent of DNA.
    Biophysical chemistry, Vol. 110, No. 1-2. (1 July 2004), pp. 59-72.
    by D Poland
    posted to genometrics master by operon on 2008-04-12 23:56:59 as **
  • Model for the distributions of k-mers in DNA sequences.
    Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 72, No. 1 Pt 1. (July 2005)
    by YH Chen, SL Nyeo, CY Yeh
    posted to genometrics master by operon on 2008-04-12 23:56:54 as **
  • The phylogeny of persistence in DNA.
    Biophysical chemistry, Vol. 112, No. 2-3. (20 December 2004), pp. 233-244.
    by D Poland
    posted to genometrics master by operon on 2008-04-12 23:56:49 as **
  • DNA methylation and Mycoplasma genomes.
    Journal of molecular evolution, Vol. 57 Suppl 1 (2003)
    by X Xia
    posted to genometrics genomics master by operon on 2008-04-12 23:56:41 as **
  • Causal analysis of CpG suppression in the Mycoplasma genome.
    Microbial & comparative genomics, Vol. 5, No. 1. (2000), pp. 51-58.
    by M Goto, T Washio, M Tomita
    posted to genometrics master by operon on 2008-04-12 23:56:33 as **
  • Quantifying intrachromosomal GC heterogeneity in prokaryotic genomes.
    Gene, Vol. 333 (26 May 2004), pp. 121-133.
    by P Bernaola-Galván, JL Oliver, P Carpena, O Clay, G Bernardi
    posted to genometrics master by operon on 2008-04-12 23:50:37 as ** along with 1 person wenhan
  • DHPC: A new tool to express genome structural features.
    Genomics (13 March 2008)
    by Xuegong Deng, Xuemei Deng, Simon Rayner, Xiangdong Liu, Qingling Zhang, Yupu Yang, Ning Li
    posted to genometrics master by operon on 2008-04-12 23:32:03 as **
  • Efficient computation of absent words in genomic sequences
    BMC Bioinformatics, Vol. 9 (26 March 2008), 167.
    by Julia Herold, Stefan Kurtz, Robert Giegerich
    posted to genometrics by operon on 2008-04-12 23:31:52 as ** along with 2 people xili03 langmead
  • Where does bacterial replication start? Rules for predicting the oriC region
    Nucl. Acids Res., Vol. 32, No. 13. (16 July 2004), pp. 3781-3791.
    by Pawel Mackiewicz, Jolanta Zakrzewska-Czerwinska, Anna Zawilak, Miroslaw R Dudek, Stanislaw Cebrat
    posted to genometrics master by operon on 2008-04-12 23:27:49 as **
  • Origin of replication in circular prokaryotic chromosomes
    Environmental Microbiology, Vol. 8, No. 2. (February 2006), pp. 353-361.
    by Peder Worning, Lars J Jensen, Peter F Hallin, Hans-Henrik Staerfeldt, David W Ussery
    posted to genometrics master by operon on 2008-04-12 23:23:22 as ** along with 3 people AaronDarling larsjuhljensen shana
  • Origins of DNA replication in the three domains of life
    FEBS Journal, Vol. 272, No. 15. (2005), pp. 3757-3766.
    by Nicholas P Robinson, Stephen D Bell
    posted to genometrics master by operon on 2008-04-12 23:23:11 as **
  • Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins.
    Proc Natl Acad Sci U S A, Vol. 102, No. 28. (12 July 2005), pp. 9836-9841.
    by M Touchon, S Nicolay, B Audit, EB Brodie of Brodie, Y d'Aubenton-Carafa, A Arneodo, C Thermes
    posted to doctorate genometrics by operon on 2008-04-12 23:19:17 as ** along with 2 people aprasad bpcusack
  • Both selective and neutral processes drive GC content evolution in the human genome
    BMC Evolutionary Biology, Vol. 8 (27 March 2008), 99.
    by Uberto Pozzoli, Giorgia Menozzi, Matteo Fumagalli, Matteo Cereda, Giacomo P Comi, Rachele Cagliani, Nereo Bresolin, Manuela Sironi
    posted to evolution genometrics master by operon on 2008-03-31 16:56:30 as **
  • Intraspecific variation in symbiont genomes: bottlenecks and the aphid-buchnera association.
    Genetics, Vol. 157, No. 2. (February 2001), pp. 477-489.
    by DJ Funk, JJ Wernegreen, NA Moran
    posted to evolution genometrics master by operon on 2008-03-28 18:41:15 as ***** along with 1 person manzanita
  • CG dinucleotide clustering is a species-specific property of the genome.
    Nucleic Acids Res (10 October 2007)
    by Jacob L L Glass, Reid F F Thompson, Batbayar Khulan, Maria E E Figueroa, Emmanuel N N Olivier, Erin J J Oakley, Gary Van Zant, Eric E E Bouhassira, Ari Melnick, Aaron Golden, Melissa J J Fazzari, John M M Greally
    posted to genometrics master by operon on 2008-03-10 02:33:06 as ** along with 2 people cabbagezs fpattyn
  • Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication.
    Gene, Vol. 340, No. 1. (29 September 2004), pp. 45-52.
    by L Guy, CA Roten
    posted to genometrics master by operon on 2008-03-10 02:29:14 as **
  • A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry
    Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2169-2179.
    by Anamaria Necsulea, Jean R Lobry
    posted to genometrics master reduction by operon on 2008-03-09 23:11:34 as **
  • The reach of the genome signature in prokaryotes
    BMC Evolutionary Biology, Vol. 6 (13 October 2006), 84.
    by Mark WJ van Passel, Eiko E Kuramae, Angela CM Luyf, Aldert Bart, Teun Boekhout
    posted to genometrics genomics master phylogenetics prokaryote by operon on 2008-02-20 00:07:52 as ** along with 2 people gelack karfunkel
  • Evolutionary implications of microbial genome tetranucleotide frequency biases.
    Genome Res, Vol. 13, No. 2. (February 2003), pp. 145-158.
    by DT Pride, RJ Meinersmann, TM Wassenaar, MJ Blaser
    posted to genometrics genomics master prokaryote by operon on 2008-02-19 14:00:02 as **
  • Patterns of Codon Usage in two Ciliates that Reassign the Genetic Code: Tetrahymena thermophila and Paramecium tetraurelia.
    Protist (18 January 2008)
    by Hannah M W M Salim, Karen L L Ring, Andre R O R Cavalcanti
    posted to genomics codon_bias genometrics master by operon on 2008-02-04 13:55:29 as **
  • Genome Size and GC Content Evolution of Festuca: Ancestral Expansion and Subsequent Reduction.
    Ann Bot (Lond), Vol. 101, No. 3. (February 2008), pp. 421-433.
    by P Smarda, P Bures, L Horová, B Foggi, G Rossi
    posted to genomics genometrics master size by operon on 2008-02-04 13:55:14 as **
  • Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
    Environmental Microbiology, Vol. 4, No. 12. (2002), pp. 799-808.
    by KE Nelson, C Weinel, IT Paulsen, RJ Dodson, H Hilbert, Martins, DE Fouts, SR Gill, M Pop, M Holmes, L Brinkac, M Beanan, RT Deboy, S Daugherty, J Kolonay, R Madupu, W Nelson, O White, J Peterson, H Khouri, I Hance, Chris P Lee, E Holtzapple, D Scanlan, K Tran, A Moazzez, T Utterback, M Rizzo, K Lee, D Kosack, D Moestl, H Wedler, J Lauber, D Stjepandic, J Hoheisel, M Straetz, S Heim, C Kiewitz, J Eisen, And KN Timmis
    posted to genomics biodiversity biofuels biotechnology genometrics by operon on 2008-02-04 13:52:51 as **
  • The relaxing ori-ter balance of Mycoplasma genomes
    Science in China Series C: Life Sciences, Vol. 51, No. 2. (1 February 2008), pp. 182-189.
    by Xin Zheng, Shulin Liu
    posted to evolution genometrics genomics master mycoplasma reduction by operon on 2008-02-04 13:25:42 as **
  • Chaos game representation for comparison of whole genomes
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Jijoy Joseph, Roschen Sasikumar
    posted to bioinformatics chaos game genometrics genomics software by operon on 2007-12-22 18:32:59 as ** along with 2 people skhadar hpaces
  • Reductive genome evolution in Buchnera aphidicola
    Proceedings of the National Academy of Sciences, Vol. 100, No. 2. (21 January 2003), pp. 581-586.
    by Roeland C van Ham, Judith Kamerbeek, Carmen Palacios, Carolina Rausell, Federico Abascal, Ugo Bastolla, Jose M Fernandez, Luis Jimenez, Marina Postigo, Francisco J Silva, Javier Tamames, Enrique Viguera, Amparo Latorre, Alfonso Valencia, Federico Moran, Andres Moya
    posted to genomics evolution genometrics reduction by operon on 2007-12-01 22:09:23 as **
  • Strong Asymmetric Mutation Bias in Endosymbiont Genomes Coincide with Loss of Genes for Replication Restart Pathways
    Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 1031-1039.
    by Lisa Klasson, Siv G Andersson
    posted to evolution genometrics genomics reduction by operon on 2007-12-01 22:09:08 as **
  • Exponential Decay of GC-content Detected by Strand-symmetric Substitution Rates Influences the Evolution of Isochore Structure.
    Mol Biol Evol (27 November 2007)
    by J E E Karro, M Peifer, R C C Hardison, M Kollmann, H H H von Grünberg
    posted to genomics analysis evolution genometrics master strand by operon on 2007-11-30 17:24:02 as ** along with 1 person gjuggler
  • Quantitative determination of gene strand bias in prokaryotic genomes.
    Genomics (5 October 2007)
    by Marcos Oliveira O de Carvalho, Henrique B B Ferreira
    posted to genomics comparative genometrics prokaryote by operon on 2007-11-05 11:43:42 as read
  • Codon bias and base composition are poor indicators of horizontally transferred genes.
    Mol Biol Evol, Vol. 18, No. 3. (March 2001), pp. 404-412.
    by LB Koski, RA Morton, GB Golding
    posted to genomics codon_bias evolution genometrics horizontal_transfer phylogenetics prokaryote by operon on 2007-07-23 20:01:36 as ** along with 3 people and 2 groups ana jmeppley karfunkel structural_bioinformatics Bioinformatics
  • Statistical properties of open reading frames in complete genome sequences
    Computers & Chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 283-301.
    by Wentian Li
    posted to bioinformatics gene genometrics genomics prokaryote statistics strand by operon on 2007-06-27 03:10:16 as *****
  • Antisense overlapping open reading frames in genes from bacteria to humans
    NUCLEIC ACIDS RES., Vol. 22, No. 10. (1994), pp. 1903-1908.
    by E Merino, P Balba?s, JL Puente, F Boli?var
    posted to evolution gene genometrics genomics prokaryote strand by operon on 2007-06-27 02:35:43 as **
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