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olberd library [48 articles]

最近 olberd さんのライブラリ .
  • Quantitative Proteomic Analysis by Accurate Mass Retention Time Pairs
    Anal. Chem., Vol. 77, No. 7. (1 April 2005), pp. 2187-2200.
    by JC Silva, R Denny, CA Dorschel, M Gorenstein, IJ Kass, GZ Li, T Mckenna, MJ Nold, K Richardson, P Young, S Geromanos
    posted to quantitation quantification proteomics mse label-free by olberd on 2008-06-12 02:27:10 as **
  • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents.
    Mol Cell Proteomics, Vol. 3, No. 12. (December 2004), pp. 1154-1169.
    by PL Ross, YN Huang, JN Marchese, B Williamson, K Parker, S Hattan, N Khainovski, S Pillai, S Dey, S Daniels, S Purkayastha, P Juhasz, S Martin, M Bartlet-Jones, F He, A Jacobson, DJ Pappin
    posted to quantitation quantification proteomics labelled itraq by olberd on 2008-06-12 02:02:48 as *****
  • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    Mol Cell Proteomics (20 May 2002), M200025-MCP200.
    by Shao-En Ong, Blagoy Blagoev, Irina Kratchmarova, Dan B Kristensen, Hanno Steen, Akhilesh Pandey, Matthias Mann
    posted to silac quantitation quantification proteomics labelled by olberd on 2008-06-12 01:53:52 as *****
  • Mass spectrometry-based proteomics
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 198-207.
    by Ruedi Aebersold, Matthias Mann
    posted to proteomics overview by olberd on 2008-06-12 00:54:24 as * along with 5 people carlk jmeppley dgront frohike sverzijl
  • Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes.
    Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 66-75.
    by H Zhang, W Yan, R Aebersold
    posted to quantitation quantification proteomics labelled by olberd on 2008-06-12 00:52:43 as **
  • An Alternative to Null-Hypothesis Significance Tests
    Psychological Science, Vol. 16, No. 5. (May 2005), pp. 345-353.
    by Peter R Killeen
    posted to statistics by olberd on 2008-06-09 02:28:24 as ** along with 6 people and 2 groups stefanherzog garyfeng takahashi briordan ajw nurban ReadingLab ACS-Basel
  • Open-source platform for the analysis of liquid chromatography-mass spectrometry (LC-MS) data.
    Methods in molecular biology (Clifton, N.J.), Vol. 428 (2008), pp. 369-382.
    by M Fitzgibbon, W Law, D May, A Detter, M McIntosh
    posted to proteomics msinspect by olberd on 2008-06-07 19:59:27 as **
  • A platform for accurate mass and time analyses of mass spectrometry data.
    J Proteome Res, Vol. 6, No. 7. (July 2007), pp. 2685-2694.
    by D May, M Fitzgibbon, Y Liu, T Holzman, J Eng, CJ Kemp, J Whiteaker, A Paulovich, M McIntosh
    posted to software proteomics msinspect identification by olberd on 2008-06-07 19:58:05 as read along with 1 person jyuh
  • ProbIDtree: An automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer
    PROTEOMICS, Vol. 5, No. 16. (2005), pp. 4096-4106.
    by Ning Zhang, Xiao-Jun Li, Mingliang Ye, Sheng Pan, Benno Schwikowski, Ruedi Aebersold
    posted to software proteomics probidtree identification by olberd on 2008-06-05 20:22:57 as ** along with 1 person nedwards
  • Overview of tandem mass spectrometry (MS/MS) database search algorithms.
    Current protocols in protein science / editorial board, John E. Coligan ... [et al.], Vol. Chapter 25 (August 2007)
    by E Kapp, F Schütz
    posted to proteomics identification by olberd on 2008-06-03 10:34:03 as **
  • Installation and use of the Computational Proteomics Analysis System (CPAS).
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 13 (June 2007)
    by T Myers, W Law, JK Eng, M McIntosh
    posted to software proteomics by olberd on 2008-06-03 10:32:53 as **
  • Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
    Mol Cell Proteomics, Vol. 7, No. 5. (1 May 2008), pp. 962-970.
    by Markus Brosch, Sajani Swamy, Tim Hubbard, Jyoti Choudhary
    posted to proteomics identification by olberd on 2008-06-03 10:31:24 as **
  • Alignment of LC-MS images, with applications to biomarker discovery and protein identification.
    Proteomics, Vol. 8, No. 4. (February 2008), pp. 650-672.
    by M Vandenbogaert, S Li-Thiao-Té, HM Kaltenbach, R Zhang, T Aittokallio, B Schwikowski
    posted to software review proteomics alignment by olberd on 2008-05-25 14:07:58 as ** along with 1 person jyuh
  • Computational proteomics: management and analysis of proteomics data
    Brief Bioinform (29 February 2008), bbn011.
    by Mario Cannataro
    posted to software proteomics by olberd on 2008-05-24 13:13:01 as ** along with 1 person renatomilani
  • Capture and analysis of quantitative proteomic data
    PROTEOMICS, Vol. 9999, No. 9999. (2007), NA.
    by King W Lau, Andrew R Jones, Neil Swainston, Jennifer A Siepen, Simon J Hubbard
    posted to software quantitation quantification proteomics by olberd on 2008-05-24 13:11:19 as ** along with 2 people jyuh dullhunk
  • Proteomics: Recent Applications and New Technologies
    Basic & Clinical Pharmacology & Toxicology, Vol. 98, No. 5. (May 2006), pp. 432-441.
    by Mollisa M Elrick, Jennie L Walgren, Michael D Mitchell, David C Thompson
    posted to software proteomics by olberd on 2008-05-24 13:08:16 as **
  • Comparative LC-MS: a landscape of peaks and valleys.
    Proteomics, Vol. 8, No. 4. (February 2008), pp. 731-749.
    by AH America, JH Cordewener
    posted to software review quantitation quantification proteomics by olberd on 2008-05-24 13:06:09 as ** along with 1 person jyuh
  • Probability-based protein identification by searching sequence databases using mass spectrometry data.
    Electrophoresis, Vol. 20, No. 18. (December 1999), pp. 3551-3567.
    by DN Perkins, DJ Pappin, DM Creasy, JS Cottrell
    posted to proteomics mascot identification by olberd on 2008-05-18 13:16:55 as *****
  • Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories.
    Proteomics, Vol. 5, No. 13. (August 2005), pp. 3501-3505.
    by L Martens, AI Nesvizhskii, H Hermjakob, M Adamski, GS Omenn, J Vandekerckhove, K Gevaert
    posted to no-tag by olberd on 2008-05-16 15:51:56 as ** along with 3 people agileproteomics pgan nedwards
  • MapQuant: open-source software for large-scale protein quantification.
    Proteomics, Vol. 6, No. 6. (March 2006), pp. 1770-1782.
    by KC Leptos, DA Sarracino, JD Jaffe, B Krastins, GM Church
    posted to software quantitation quantification proteomics processing mapquant by olberd on 2008-05-08 15:53:43 as ***
  • Data reduction of isotope-resolved LC-MS spectra
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1394-1400.
    by Peicheng Du, Rajagopalan Sudha, Michael B Prystowsky, Ruth H Angeletti
    posted to software proteomics processing lcms2d by olberd on 2008-05-08 15:26:43 as read along with 1 person jyuh
  • Interpretation of Shotgun Proteomic Data: The Protein Inference Problem
    Mol Cell Proteomics, Vol. 4, No. 10. (1 October 2005), pp. 1419-1440.
    by Alexey I Nesvizhskii, Ruedi Aebersold
    posted to proteomics overview by olberd on 2008-05-05 14:41:10 as read along with 3 people thinkinpoint malcook kallberg
  • Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer.
    Proteomics, Vol. 3, No. 6. (June 2003), pp. 847-850.
    by S Purvine, JT Eppel, EC Yi, DR Goodlett
    posted to proteomics mse by olberd on 2008-05-05 14:29:22 as read
  • An introduction to quadrupole-time-of-flight mass spectrometry.
    Journal of mass spectrometry : JMS, Vol. 36, No. 8. (August 2001), pp. 849-865.
    by IV Chernushevich, AV Loboda, BA Thomson
    posted to deadtime by olberd on 2008-05-05 14:27:24 as ****
  • Simultaneous Qualitative and Quantitative Analysis of theEscherichia coli Proteome: A Sweet Tale
    Mol Cell Proteomics, Vol. 5, No. 4. (1 April 2006), pp. 589-607.
    by Jeffrey C Silva, Richard Denny, Craig Dorschel, Marc V Gorenstein, Guo-Zhong Li, Keith Richardson, Daniel Wall, Scott J Geromanos
    posted to quantitation quantification proteomics normalization mse by olberd on 2008-05-05 14:14:03 as read
  • Absolute Quantification of Proteins by LCMSE: A Virtue of Parallel ms Acquisition
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 144-156.
    by Jeffrey C Silva, Marc V Gorenstein, Guo-Zhong Li, Johannes P Vissers, Scott J Geromanos
    posted to quantitation quantification proteomics mse absolute by olberd on 2008-05-05 14:10:56 as read along with 1 person nedwards
  • Quantitative Proteomic Analysis of Drug-Induced Changes in Mycobacteria
    J. Proteome Res., Vol. 5, No. 1. (6 January 2006), pp. 54-63.
    by MA Hughes, JC Silva, SJ Geromanos, CA Townsend
    posted to quantitation quantification proteomics mse by olberd on 2008-05-05 14:08:43 as read
  • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
    Genome Biol, Vol. 3, No. 7. (18 June 2002)
    by J Vandesompele, K De Preter, F Pattyn, B Poppe, N Van Roy, A De Paepe, F Speleman
    posted to quantitation quantification normalization by olberd on 2008-05-05 14:06:04 as read along with 6 people and 1 group ecattell jfr cdawson qfwills aubinhon rschnee GIG
  • Tools for computational processing of LC-MS datasets: a user's perspective.
    Comput Methods Programs Biomed, Vol. 86, No. 3. (June 2007), pp. 281-290.
    by MC Codrea, CR Jiménez, J Heringa, E Marchiori
    posted to software review proteomics by olberd on 2008-05-05 14:02:29 as read along with 1 person jyuh
  • PEPPeR, a Platform for Experimental Proteomic Pattern Recognition
    Mol Cell Proteomics, Vol. 5, No. 10. (1 October 2006), pp. 1927-1941.
    by Jacob D Jaffe, DR Mani, Kyriacos C Leptos, George M Church, Michael A Gillette, Steven A Carr
    posted to software proteomics processing by olberd on 2008-05-05 13:57:46 as read
  • Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry.
    Mol Cell Proteomics, Vol. 4, No. 4. (April 2005), pp. 419-434.
    by J Listgarten, A Emili
    posted to review proteomics processing by olberd on 2008-05-05 13:53:05 as read along with 2 people ml_and_apps waszak
  • A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1902-1909.
    by M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, J Eng, R Fang, C Lin, J Chen, D Goodlett, J Whiteaker, A Paulovich, M McIntosh
    posted to software proteomics msinspect by olberd on 2008-05-05 13:51:20 as read along with 2 people Gehrke nedwards
  • Influence of Peptide Composition, Gas-Phase Basicity, and Chemical Modification on Fragmentation Efficiency: Evidence for the Mobile Proton Model
    J. Am. Chem. Soc., Vol. 118, No. 35. (4 September 1996), pp. 8365-8374.
    by AR Dongre, JL Jones, A Somogyi, VH Wysocki
    posted to proteomics by olberd on 2008-05-04 17:38:43 as *****
  • Mass Spectrometry, Principles and Applications
    (1999)
    by Edmond de Hoffmann, Vincent Stroobant
    posted to proteomics by olberd on 2008-05-04 17:26:44 as read
  • Using accurate mass electrospray ionization-time-of-flight mass spectrometry with in-source collision-induced dissociation to sequence peptide mixtures
    Journal of Chromatography A, Vol. 1020, No. 1. (5 December 2003), pp. 11-26.
    by Jon D Williams, Michael Flanagan, Linda Lopez, Steve Fischer, Luke A Miller
    posted to proteomics mse by olberd on 2008-05-04 17:16:48 as read
  • Protein and peptide identification algorithms using MS for use in high-throughput, automated pipelines.
    Proteomics, Vol. 5, No. 16. (November 2005), pp. 4082-4095.
    by I Shadforth, D Crowther, C Bessant
    posted to software review proteomics identification by olberd on 2008-05-04 16:44:29 as *****
  • High-accuracy peak picking of proteomics data using wavelet techniques.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2006), pp. 243-254.
    by E Lange, C Gröpl, K Reinert, O Kohlbacher, A Hildebrandt
    posted to proteomics openms by olberd on 2008-05-04 15:41:08 as read
  • Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples
    Computational Life Sciences (2005), pp. 151-162.
    by Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G Huber, Bettina M Mayr, Christoph L Klein
    posted to quantitation quantification proteomics openms by olberd on 2008-05-04 15:29:22 as read
  • A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data
    Research in Computational Molecular Biology (2007), pp. 473-487.
    by Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
    posted to quantitation quantification proteomics openms by olberd on 2008-05-04 15:26:40 as read along with 1 person nedwards
  • Processing methods for differential analysis of LC/MS profile data
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Mikko Katajamaa, Matej Oresic
    posted to software proteomics mzmine by olberd on 2008-04-27 10:40:52 as **
  • Use of an integrated MS--multiplexed MS/MS data acquisition strategy for high-coverage peptide mapping studies.
    Rapid Commun Mass Spectrom, Vol. 21, No. 5. (2007), pp. 730-744.
    by AB Chakraborty, SJ Berger, JC Gebler
    posted to proteomics mse by olberd on 2008-04-27 10:06:45 as read along with 1 person jyuh
  • OpenMS - An open-source software framework for mass spectrometry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Marc Sturm, Andreas Bertsch, Clemens Groepl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole S Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
    posted to software proteomics openms by olberd on 2008-04-27 09:56:09 as read along with 4 people groepl brianb jyuh neils
  • A quantitative analysis software tool for mass spectrometry–based proteomics
    Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 319-322.
    by Sung K Park, John D Venable, Tao Xu, John R Yates
    posted to census label-free proteomics quantification quantitation software by olberd on 2008-04-22 15:24:54 as *** along with 1 person jyuh
  • Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data.
    Anal Chem, Vol. 80, No. 4. (15 February 2008), pp. 961-971.
    by GL Finney, AR Blackler, MR Hoopmann, JD Canterbury, CC Wu, MJ MacCoss
    posted to software quantitation quantification proteomics label-free crawdad by olberd on 2008-04-22 15:20:22 as ** along with 1 person jyuh
  • Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
    Brief Bioinform (28 September 2007), bbm046.
    by Jason W Wong, Matthew J Sullivan, Gerard Cagney
    posted to review quantitation quantification proteomics label-free by olberd on 2008-04-22 15:11:09 as *** along with 2 people jyuh neils
  • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 51-61.
    by LN Mueller, MY Brusniak, DR Mani, R Aebersold
    posted to software review quantitation quantification proteomics labelled label-free by olberd on 2008-04-22 15:04:50 as **** along with 4 people nuin jyuh raiyar nedwards
  • A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen.
    Proteomics, Vol. 8, No. 5. (March 2008), pp. 994-999.
    by JM Asara, HR Christofk, LM Freimark, LC Cantley
    posted to label-free msms_tic proteomics quantification quantitation silac spectral-counting by olberd on 2008-04-22 14:24:44 as read along with 1 person jyuh
  • Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Proteomics, Vol. 7, No. 5. (March 2007), pp. 655-667.
    by H Lam, EW Deutsch, JS Eddes, JK Eng, N King, SE Stein, R Aebersold
    posted to identification proteomics by olberd on 2008-04-21 11:44:21 as read along with 3 people fishtank jyuh nedwards
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