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oelemento さんのウォッチリスト [1001 articles]

最近追加された論文の中で oelemento さんの設定条件に合うもののリストです
  • Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression.
    Proceedings of the National Academy of Sciences of the United States of America (12 September 2008)
    by Bernardo Lemos, Luciana O O Araripe, Pierre Fontanillas, Daniel L L Hartl
  • Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.
    Nat Methods (11 June 2007)
    by Gordon Robertson, Martin Hirst, Matthew Bainbridge, Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L L Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones
  • Large-scale turnover of functional transcription factor binding sites in Drosophila.
    PLoS Comput Biol, Vol. 2, No. 10. (October 2006)
    by AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
  • Combining results of microarray experiments: a rank aggregation approach.
    Statistical applications in genetics and molecular biology, Vol. 5 (2006)
    by RP DeConde, S Hawley, S Falcon, N Clegg, B Knudsen, R Etzioni
    posted to integration by jfr on 2008-10-08 16:56:24 as **
  • Drug discovery in the era of facebook-new tools for scientific networking.
    Drug discovery today (1 August 2008)
    by David S S Bailey, Edward D D Zanders
    posted to drug_discovery by jfr on 2008-10-08 16:53:22 as ** along with 4 people Yanno jjcain00 dullhunk jyuh
  • Recurrent gene fusions in prostate cancer
    Nature Reviews Cancer, Vol. 8, No. 7. (19 June 2008), pp. 497-511.
    by Chandan Kumar-Sinha, Scott A Tomlins, Arul M Chinnaiyan
    posted to review prostate_cancer gene_fusion by jfr on 2008-10-08 15:26:48 as **
  • Diagnostic and prognostic microRNAs in stage II colon cancer.
    Cancer research, Vol. 68, No. 15. (1 August 2008), pp. 6416-6424.
    posted to stageii mirna colon_cancer classification by jfr on 2008-10-08 15:24:40 as read
  • K-Ras mutations and treatment outcome in colorectal cancer patients receiving exclusive fluoropyrimidine therapy.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 15. (1 August 2008), pp. 4830-4835.
    posted to therapy mutation kras colon_cancer by jfr on 2008-10-08 15:23:23 as **
  • Integrating biological data - the Distributed Annotation System
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Andrew Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert Finn, Henning Hermjakob, Tim Hubbard, Rafael Jimenez, Philip Jones, Andreas Kahari, Eugene Kulesha, Jose Macias, Gabrielle Reeves, Andreas Prlic
  • Micromanagers of malignancy: role of microRNAs in regulating metastasis.
    Trends in genetics : TIG (30 July 2008)
    by Li Ma, Robert A A Weinberg
    posted to review mirna metastasis by jfr on 2008-10-08 14:52:16 as **** along with 1 person maralena
  • Oncomirs: The potential role of non-coding microRNAs in understanding cancer.
    Bioinformation, Vol. 2, No. 8. (2008), pp. 330-334.
    by J Manikandan, JJ Aarthi, SD Kumar, PN Pushparaj
    posted to review mirna by jfr on 2008-10-08 14:51:09 as **
  • Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
    Nat Biotech, Vol. 26, No. 8. (2008), pp. 889-896.
    by Chris F Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R Brinkman, Michael, Eric W Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M Hancock, Nigel W Hardy, Henning Hermjakob, Randall K Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas L Novere, Jim Leebens-Mack, Suzanna E Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth Mcnally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M Reecy, Donald G Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H Scheuermann, Daniel Schober, Barry Smith, Jason Snape, Christian J Stoeckert, Keith Tipton, Peter Sterk, Andreas Untergasser, Jo Vandesompele, Stefan Wiemann
  • Network-based global inference of human disease genes
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Xuebing Wu, Rui Jiang, Michael Q Zhang, Shao Li
  • Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast
    Science (25 September 2008), 1162609.
    by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, Ke Zhang, Tamas Fischer, Sean R Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I Grewal, Jonathan S Weissman, Nevan J Krogan
  • Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs.
    Nature genetics (7 September 2008)
    by Joshua M M Korn, Finny G G Kuruvilla, Steven A A McCarroll, Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J J Collins, Katayoon Darvishi, Charles Lee, Marcia M M Nizzari, Stacey B B Gabriel, Shaun Purcell, Mark J J Daly, David Altshuler
  • A robust statistical method for case-control association testing with copy number variation.
    Nature genetics (7 September 2008)
    by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, Richard Redon, Jonathan Marchini, David Clayton, Matthew E E Hurles
  • Systematic assessment of copy number variant detection via genome-wide SNP genotyping.
    Nature genetics (7 September 2008)
    by Gregory M M Cooper, Troy Zerr, Jeffrey M M Kidd, Evan E E Eichler, Deborah A A Nickerson
  • Integrated detection and population-genetic analysis of SNPs and copy number variation.
    Nature genetics (7 September 2008)
    by Steven A A McCarroll, Finny G G Kuruvilla, Joshua M M Korn, Simon Cawley, James Nemesh, Alec Wysoker, Michael H H Shapero, Paul I W I de Bakker, Julian B B Maller, Andrew Kirby, Amanda L L Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J J Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W W Jones, Rich Rava, Mark J J Daly, Stacey B B Gabriel, David Altshuler
  • Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation
    PLoS Biology, Vol. 6, No. 9. (1 September 2008), e238.
    by Joseph M Gonzales, Jigar J Patel, Napawan Ponmee, Lei Jiang, Asako Tan, Steven P Maher, Stefan Wuchty, Pradipsinh K Rathod, Michael T Ferdig
    posted to malaria eqtl by caseybrown on 2008-10-08 03:31:40 as ** along with 1 person djkt
  • Caching code chunks in dynamic documents
    Computational Statistics
    by Seth Falcon
    posted to reproducible_research r by jfr on 2008-10-07 18:17:29 as read
  • MiRNAs, epigenetics, and cancer.
    Mammalian genome : official journal of the International Mammalian Genome Society (8 August 2008)
    by Arefeh Rouhi, Dixie L Mager, R K Humphries, Florian Kuchenbauer
    posted to review mirna epigenetics by jfr on 2008-10-07 18:15:53 as **
  • MicroRNA expression in cytogenetically normal acute myeloid leukemia.
    The New England journal of medicine, Vol. 358, No. 18. (1 May 2008), pp. 1919-1928.
    posted to mirna leukemia classification by jfr on 2008-10-07 18:12:29 as ** along with 1 person Amazoness
  • Evolving molecular classification by genomic and proteomic biomarkers in colorectal cancer: Potential implications for the surgical oncologist.
    Surgical oncology (29 July 2008)
    by Kjetil Søreide, Bjørn S S Nedrebø, Jens-Christian C Knapp, Tom B B Glomsaker, Jon Arne A Søreide, Hartwig Kørner
    posted to review colon_cancer by jfr on 2008-10-07 16:43:48 as ****
  • The 70-gene prognosis-signature predicts disease outcome in breast cancer patients with 1-3 positive lymph nodes in an independent validation study.
    Breast cancer research and treatment (27 July 2008)
    by Stella Mook, Marjanka K Schmidt, Giuseppe Viale, Giancarlo Pruneri, Inge Eekhout, Arno Floore, Annuska M Glas, Jan Bogaerts, Fatima Cardoso, Martine J Piccart-Gebhart, Emiel T Rutgers, Laura J Van't Veer,
    posted to prognosis classification breast_cancer by jfr on 2008-10-07 16:41:34 as **
  • PI3KCA/PTEN deregulation contributes to impaired responses to cetuximab in metastatic colorectal cancer patients.
    Annals of oncology : official journal of the European Society for Medical Oncology / ESMO (31 July 2008)
    posted to therapy pten mutation egfr colon_cancer by jfr on 2008-10-07 16:40:19 as read
  • Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories
    BMC Genomics, Vol. 9 (12 June 2008), 285.
    by Michael J Boedigheimer, Russell D Wolfinger, Michael B Bass, Pierre R Bushel, Jeff W Chou, Matthew Cooper, Christopher J Corton, Jennifer Fostel, Susan Hester, Janice S Lee, Fenglong Liu, Jie Liu, Hui-Rong Qian, John Quackenbush, Syril Pettit, Karol L Thompson
    posted to quality_control maqc by jfr on 2008-10-07 16:37:24 as ***
  • Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures
    BMC Bioinformatics, Vol. 8 (18 May 2007), 157.
    by Xin Lu, David L Perkins
    posted to fdr by jfr on 2008-10-07 16:34:42 as ** along with 3 people jyuh shigepong shikin
  • A stochastic carcinogenesis model incorporating multiple types of genomic instability fitted to colon cancer data.
    Journal of theoretical biology, Vol. 254, No. 2. (21 September 2008), pp. 229-238.
    by MP Little, P Vineis, G Li
    posted to mutation model colon_cancer cin by jfr on 2008-10-01 11:12:54 as ***
  • Protein tyrosine phosphatase receptor-type O (PTPRO) is co-regulated by E2F1 and miR-17-92.
    FEBS letters, Vol. 582, No. 19. (20 August 2008), pp. 2850-2856.
    by X Xu, Y Hong, C Kong, L Xu, J Tan, Q Liang, B Huang, J Lu
    posted to mirna mir17-92 e2f1 by jfr on 2008-10-01 11:10:37 as **
  • Comparison of molecular phenotypes of ductal carcinoma in situ and invasive breast cancer
    Breast Cancer Research, Vol. 10 (05 August 2008), R67.
    by Rulla M Tamimi, Heather J Baer, Jonathan Marotti, Mark Galan, Laurie Galaburda, Yineng Fu, Anne C Deitz, James L Connolly, Stuart J Schnitt, Graham A Colditz, Laura C Collins
  • Meta-analysis of gene-expression profiles in breast cancer: toward a unified understanding of breast cancer sub-typing and prognosis signatures
    Breast Cancer Research, Vol. 10 (28 July 2008), R65.
    by Pratyaksha Wirapati, Christos Sotiriou, Susanne Kunkel, Pierre Farmer, Sylvain Pradervand, Benjamin Haibe-Kains, Christine Desmedt, Michail Ignatiadis, Thierry Sengstag, Frederic Schutz, Darlene R Goldstein, Martine Piccart, Mauro Delorenzi
  • Molecular targeted therapies for breast cancer treatment
    Breast Cancer Research, Vol. 10 (24 July 2008), 211.
    by Claus M Schlotter, Ulf Vogt, Heike Allgayer, Burkhard Brandt
    posted to review breast_cancer by jfr on 2008-10-01 11:04:45 as ** along with 1 person Zephyrus
  • Oncogenic Ras and Transforming Growth Factor-beta Synergistically Regulate AU-Rich Element-Containing mRNAs during Epithelial to Mesenchymal Transition
    Mol Cancer Res, Vol. 6, No. 7. (1 July 2008), pp. 1124-1136.
    by Cindy L Kanies, Joshua J Smith, Christian Kis, Carl Schmidt, Shawn Levy, Khalid S Khabar, Jason Morrow, Natasha Deane, Dan A Dixon, Daniel R Beauchamp
    posted to tgfb kras colon_cancer au-rich by jfr on 2008-10-01 11:03:47 as ** along with 1 person slevy03
  • Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study.
    Nature medicine (20 July 2008)
    by , Kerby Shedden, Jeremy M G M Taylor, Steven A A Enkemann, Ming-Sound S Tsao, Timothy J J Yeatman, William L L Gerald, Steven Eschrich, Igor Jurisica, Thomas J J Giordano, David E E Misek, Andrew C C Chang, Chang Qi Q Zhu, Daniel Strumpf, Samir Hanash, Frances A A Shepherd, Keyue Ding, Lesley Seymour, Katsuhiko Naoki, Nathan Pennell, Barbara Weir, Roel Verhaak, Christine Ladd-Acosta, Todd Golub, Michael Gruidl, Anupama Sharma, Janos Szoke, Maureen Zakowski, Valerie Rusch, Mark Kris, Agnes Viale, Noriko Motoi, William Travis, Barbara Conley, Venkatraman E E Seshan, Matthew Meyerson, Rork Kuick, Kevin K K Dobbin, Tracy Lively, James W W Jacobson, David G G Beer, Kerby Shedden, Jeremy M G M Taylor, Steven A A Enkemann, Ming-Sound S Tsao, Timothy J J Yeatman, William L L Gerald, Steven Eschrich, Igor Jurisica, Thomas J J Giordano, David E E Misek, Andrew C C Chang, Chang Qi Q Zhu, Daniel Strumpf, Samir Hanash, Frances A A Shepherd, Keyue Ding, Lesley Seymour, Katsuhiko Naoki, Nathan Pennell, Barbara Weir, Roel Verhaak, Christine Ladd-Acosta, Todd Golub, Michael Gruidl, Anupama Sharma, Janos Szoke, Maureen Zakowski, Valerie Rusch, Mark Kris, Agnes Viale, Noriko Motoi, William Travis, Barbara Conley, Venkatraman E E Seshan, Matthew Meyerson, Rork Kuick, Kevin K K Dobbin, Tracy Lively, James W W Jacobson, David G G Beer
  • Strategies for discovering novel cancer biomarkers through utilization of emerging technologies
    Nat Clin Prac Oncol, Vol. 5, No. 10. (October 2008), pp. 588-599.
    by Vathany Kulasingam, Eleftherios P Diamandis
    posted to review markers by jfr on 2008-10-01 09:56:57 as ** along with 1 person sg45653
  • Gene-expression profiling in epithelial ovarian cancer.
    Nature clinical practice. Oncology, Vol. 5, No. 10. (October 2008), pp. 577-587.
    posted to review ovarian_cancer gene_expression by jfr on 2008-10-01 09:55:06 as **
  • Latest discoveries and trends in translational cancer research: highlights of the 2008 Annual Meeting of the American Association for Cancer Research.
    Technology in cancer research & treatment, Vol. 7, No. 4. (August 2008), pp. 269-277.
    by WC Cho
    posted to meeting_report by jfr on 2008-10-01 09:54:20 as ****
  • A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
    BMC Bioinformatics, Vol. 9 (22 July 2008), 319.
    by Alexander Statnikov, Lily Wang, Constantin F Aliferis
  • The public road to high-quality curated biological pathways.
    Drug discovery today (21 July 2008)
    by Michiel E E Adriaens, Magali Jaillard, Andra Waagmeester, Susan L M L Coort, Alex R R Pico, Chris T A T Evelo
  • The ontology of biological taxa.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    posted to ontology by jfr on 2008-09-30 13:14:41 as * along with 1 person jyuh
  • Tissue-specific splicing factor gene expression signatures
    Nucl. Acids Res. (24 July 2008), gkn463.
    by Ana R Grosso, Anita Q Gomes, Nuno L Barbosa-Morais, Sandra Caldeira, Natalie P Thorne, Godfrey Grech, Marieke von Lindern, Maria Carmo-Fonseca
    posted to alternative_splicing by jfr on 2008-09-30 13:11:43 as * along with 2 people cajunsushi aconesa
  • A comparison of normalization techniques for microRNA microarray data.
    Statistical applications in genetics and molecular biology, Vol. 7 (2008)
    by Y Rao, Y Lee, D Jarjoura, AS Ruppert, CG Liu, JC Hsu, JP Hagan
    posted to normalization mirna comparison by jfr on 2008-09-30 11:16:11 as ***
  • Comparative 3'UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines.
    PLoS ONE, Vol. 3, No. 7. (2008)
    posted to regulation ephb 3utr by jfr on 2008-09-30 11:13:38 as ** along with 1 person maximilianh
  • MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
    Genome Biology, Vol. 9 (24 July 2008), R118.
    by Vu T Chu, Raphael Gottardo, Adrian E Raftery, Roger E Bumgarner, Ka Y Yeung
  • Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers
    Genome Biology, Vol. 9 (08 July 2008), R108.
    by Kamila Naxerova, Carol J Bult, Anne Peaston, Karen Fancher, Barbara B Knowles, Simon Kasif, Isaac S Kohane
    posted to no-tag by jfr on 2008-09-30 11:10:42 as ****
  • A precisely regulated gene expression cassette potently modulates metastasis and survival in multiple solid cancers.
    PLoS genetics, Vol. 4, No. 7. (2008)
    by K Yu, K Ganesan, LK Tan, M Laban, J Wu, XD Zhao, H Li, CH Leung, Y Zhu, CL Wei, SC Hooi, L Miller, P Tan
    posted to gene_lists classification by jfr on 2008-09-30 11:09:26 as ***
  • Computational biology resources lack persistence and usability.
    PLoS computational biology, Vol. 4, No. 7. (July 2008)
    by S Veretnik, JL Fink, PE Bourne
  • Discovering high-order patterns of gene expression levels.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 6. (g 2008), pp. 625-637.
    by AK Wong, WH Au, KC Chan
    posted to class_discovery by jfr on 2008-09-29 16:18:40 as **
  • Regulation of the adenomatous polyposis coli gene by the miR-135 family in colorectal cancer.
    Cancer research, Vol. 68, No. 14. (15 July 2008), pp. 5795-5802.
    posted to mirna mir135 colon_cancer apc by jfr on 2008-09-29 16:15:46 as **
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