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nklee no-tag [38 articles]

最近 nklee さんのライブラリに追加された論文の中から タグ no-tag. You can also see everyone's no-tag.
  • Automated Hierarchical Density Shaving: A robust, automated clustering and visualization framework for large biological datasets
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 11, No. 1. (2009), pp. 1-1.
    by G Gupta, A Liu, Ghosh
    posted to no-tag by nklee on 2008-09-25 05:32:25 as **
  • Detection of functional DNA motifs via statistical over-representation
    Nucl. Acids Res., Vol. 32, No. 4. (26 February 2004), pp. 1372-1381.
    by Martin C Frith, Yutao Fu, Liqun Yu, Jiang-Fan Chen, Ulla Hansen, Zhiping Weng
    posted to no-tag by nklee on 2008-09-22 03:35:44 as ** along with 1 person natstreet
  • Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
    Systematic Zoology, Vol. 20, No. 4. (1971), pp. 406-416.
    by Walter M Fitch
    posted to no-tag by nklee on 2008-08-27 01:44:34 as **
  • Deterministic annealing EM algorithm
    Neural Networks, Vol. 11, No. 2. (31 March 1998), pp. 271-282.
    by Naonori Ueda, Ryohei Nakano
    posted to no-tag by nklee on 2008-07-16 07:07:00 as **
  • A Profile-Based Deterministic Sequential Monte Carlo Algorithm for Motif Discovery.
    Bioinformatics (17 November 2007)
    by Kuo-Ching C Liang, Xiaodong Wang, Dimitris Anastassiou
    posted to no-tag by nklee on 2008-04-01 08:23:43 as ** along with 5 people and 1 group grahamc cjeans maximilianh idonaldson isimpson Motif Discovery
  • SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
    Bioinformatics, Vol. 15, No. 7-8. (g 1999), pp. 607-611.
    by J Zhu, MQ Zhang
    posted to no-tag by nklee on 2008-04-01 02:00:27 as read along with 4 people chad_davis xiaobeizhao lusk njcitulike
  • An Efficient Cis-Element Discovery Method Using Multiple Sequence Comparisons Based on Evolutionary Relationships
    Genomics, Vol. 71, No. 2. (15 January 2001), pp. 260-262.
    by Kenta Sumiyama, Chang-Bae Kim, Frank H Ruddle
    posted to no-tag by nklee on 2008-03-25 21:28:19 as **
  • Motif discovery by monotone scores
    Discrete Applied Mathematics, Vol. 155, No. 6-7. (1 April 2007), pp. 695-706.
    by Alberto Apostolico, Cinzia Pizzi
    posted to no-tag by nklee on 2008-03-25 21:22:39 as **
  • SeqAn - An efficient, generic C++ library for sequence analysis
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andreas Doring, David Weese, Tobias Rausch, Knut Reinert
    posted to no-tag by nklee on 2008-01-10 05:18:25 as ** along with 8 people jyuh chad_davis laughcry ryanraaum barriot mailund magusina reyez
  • Informative priors based on transcription factor structural class improve de novo motif discovery
    Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e384-392.
    by Leelavati Narlikar, Raluca Gordan, Uwe Ohler, Alexander J Hartemink
    posted to no-tag by nklee on 2008-01-01 04:36:14 as ** along with 3 people dquest idonaldson yevishere
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to no-tag by nklee on 2008-01-01 04:35:44 as ** along with 12 people and 2 groups ana brant cwbrown aswin cjeans zwang cabbagezs maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • Data Augmentation Algorithms for Detecting Conserved Domains in Protein Sequences: A Comparative Study
    J. Proteome Res. (15 December 2007)
    by Chengpeng Bi
    posted to no-tag by nklee on 2008-01-01 01:08:03 as **
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
    posted to no-tag by nklee on 2008-01-01 01:07:27 as ** along with 12 people and 1 group jyuh balicea AbnerCYH stajich cjeans GustavoLacerda GeeSharpMinor sobolevnrm cabbagezs biehl softsimu jfr baker-group
  • Exploring Conservation of Transcription Factor Binding Sites with CONREAL.
    Methods Mol Biol, Vol. 395 (2007), pp. 437-448.
    by E Berezikov, V Guryev, E Cuppen
    posted to no-tag by nklee on 2007-12-19 21:20:26 as ** along with 1 person maximilianh
  • TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements
    BMC Genomics, Vol. 8 (29 November 2007), 441.
    by Alison P Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh
    posted to no-tag by nklee on 2007-12-19 21:20:18 as ** along with 3 people maximilianh yevishere jyuh
  • Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis.
    Plant Physiol, Vol. 136, No. 2. (October 2004), pp. 3009-3022.
    by G Haberer, T Hindemitt, BC Meyers, KF Mayer
    posted to no-tag by nklee on 2007-12-19 03:21:13 as ** along with 2 people and 1 group ushishir cisevol cis-regulatory-evolution
  • Efficient and accurate P-value computation for Position Weight Matrices
    Algorithms for Molecular Biology, Vol. 2, No. 1. (2007)
    by Helene Touzet, Jean S Varre
    posted to no-tag by nklee on 2007-12-12 05:56:53 as ** along with 3 people chad_davis barriot xili03
  • Determining promoter location based on DNA structure first-principles calculations.
    Genome Biology, Vol. 8, No. 12. (2007)
    by Ramon J Goni, Alberto Perez, David Torrents, Modesto Orozco
    posted to no-tag by nklee on 2007-12-12 04:40:44 as ** along with 2 people cjeans maximilianh
  • Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
    BMC Bioinformatics, Vol. 8 (11 December 2007), 476.
    by Corinne Dahinden, Giovanni Parmigiani, Mark C Emerick, Peter Buhlmann
    posted to no-tag by nklee on 2007-12-12 03:32:45 as ** along with 1 person ryanraaum
  • Integrating genomic data to predict transcription factor binding.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 83-94.
    by DT Holloway, M Kon, C DeLisi
    posted to no-tag by nklee on 2007-11-29 21:55:02 as ** along with 3 people and 1 group dpollard malcook adsmitty EisenLab
  • Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
    BMC Bioinformatics, Vol. 8 (09 November 2007), 437.
    by Xueping Yu, Jimmy Lin, Donald J Zack, Jiang Qian
    posted to no-tag by nklee on 2007-11-12 00:59:03 as ** along with 8 people jyuh chad_davis mikaelhuss maximilianh idonaldson njcitulike bootsy snow_dragon
  • Reliable prediction of transcription factor binding sites by phylogenetic verification.
    Proc Natl Acad Sci U S A, Vol. 102, No. 47. (22 November 2005), pp. 16945-16950.
    by X Li, S Zhong, WH Wong
    posted to no-tag by nklee on 2007-10-23 06:21:49 as ** along with 2 people xwbcn postrational
  • fREDUCE: Detection of degenerate regulatory elements using correlation with expression
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Randy Wu, Christina Chaivorapol, Jiashun Zheng, Hao Li, Shoudan Liang
    posted to no-tag by nklee on 2007-10-18 05:55:58 as ** along with 1 person maximilianh
  • Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs
    BMC Bioinformatics, Vol. 5, No. 1. (2004)
    by Davide Cora, Ferdinando Di Cunto, Paolo Provero, Lorenzo Silengo, Michele Caselle
    posted to no-tag by nklee on 2007-10-17 04:05:19 as ** along with 1 person nuin
  • A bottom-up approach to gene regulation
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860.
    by Nicholas J Guido, Xiao Wang, David Adalsteinsson, David Mcmillen, Jeff Hasty, Charles R Cantor, Timothy C Elston, JJ Collins
    posted to no-tag by nklee on 2007-10-10 23:26:06 as ** along with 15 people and 2 groups raik rklancer snuppepuppan jyuh okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard tmmurali Bioinformatics SynBioSys
  • Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945.
    by S Gunewardena, P Jeavons, Z Zhang
    posted to no-tag by nklee on 2007-10-10 23:25:03 as ** along with 2 people and 1 group dpollard samal EisenLab
  • Semi-supervised clustering by seeding
    (2002)
    by S Basu, A Banerjee, R Mooney
    posted to no-tag by nklee on 2007-10-10 23:24:05 as ** along with 4 people sona samal anon_pl jread82
  • Integrated analysis of yeast regulatory sequences for biologically linked clusters of genes.
    Funct Integr Genomics, Vol. 3, No. 3. (July 2003), pp. 125-134.
    by A Sandelin, A Höglund, B Lenhard, WW Wasserman
    posted to no-tag by nklee on 2007-10-08 00:59:06 as ** along with 2 people aalibes xili03
  • Cooperative co-evolutionary algorithm-how to evaluate a module?
    Combinations of Evolutionary Computation and Neural Networks, 2000 IEEE Symposium on (2000), pp. 150-157.
    by QF Zhao, O Hammami, K Kuroda, K Saito
    posted to no-tag by nklee on 2007-10-08 00:01:57 as ** along with 2 people nsamways cwoodward
  • Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors,
    Journal of Molecular Biology, Vol. 309, No. 1. (25 May 2001), pp. 99-120.
    by Alexander E Kel, Olga V Kel-Margoulis, Peggy J Farnham, Stephanie M Bartley, Edgar Wingender, Michael Q Zhang
    posted to no-tag by nklee on 2007-09-30 23:46:04 as ** along with 1 person tuck
  • Statistical significance of cis-regulatory modules
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Dustin Schones, Andrew Smith, Michael Zhang
    posted to no-tag by nklee on 2007-09-28 08:16:02 as ** along with 9 people and 1 group indigoviolet dpollard dquest sebastien_vigneau shigepong SeungjoonOh GustavoLacerda xili03 sconlan EisenLab
  • Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs
    BMC Bioinformatics, Vol. 8 (13 September 2007), 337.
    by Mamoon Rashid, Sudipto Saha, Gajendra PS Raghava
    posted to no-tag by nklee on 2007-09-28 08:09:17 as **
  • CLUSS: Clustering of protein sequences based on a new similarity measure
    BMC Bioinformatics, Vol. 8 (04 August 2007), 286.
    by Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski, Alain Fleury
    posted to no-tag by nklee on 2007-09-28 08:07:27 as ** along with 3 people and 1 group grahamc ninch bobychan ParkinsonLab_at_MaRS
  • Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    BMC Bioinformatics, Vol. 8 (03 August 2007), 283.
    by Xiangdong Liu, Walter J Jessen, Siva Sivaganesan, Bruce J Aronow, Mario Medvedovic
    posted to no-tag by nklee on 2007-09-28 08:05:40 as ** along with 3 people and 1 group bais dquest naegele ic4
  • Comparative analysis of long DNA sequences by per element information content using different contexts
    BMC Bioinformatics, Vol. 8, No. Suppl 2. (2007)
    by Trevor Dix, David Powell, Lloyd Allison, Julie Bernal, Samira Jaeger, Linda Stern
    posted to no-tag by nklee on 2007-09-28 08:04:38 as **
  • Transcriptional Regulation by Competing Transcription Factor Modules
    PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164.
    by Rutger Hermsen, Sander Tans, Ten
    posted to no-tag by nklee on 2007-09-26 23:38:06 as ** along with 3 people wnpx nirfriedman zwang
  • The Computational Support of Scientific Discovery
    Lecture Notes in Computer Science, Vol. 2049 (2001), pp. 230-??.
    by Pat Langley
    posted to no-tag by nklee on 2007-09-26 23:36:33 as ** along with 1 person scis0000001
  • A cross-species alignment tool (CAT)
    BMC Bioinformatics, Vol. 8 (19 September 2007), 349.
    by Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane K Wong, Jun Wang
    posted to no-tag by nklee on 2007-09-26 09:14:51 as ** along with 1 person jyuh
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