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neils structure [62 articles]

最近 neils さんのライブラリに追加された論文の中から タグ structure. You can also see everyone's structure.
  • Cytochrome cd1 structure: unusual haem environments in a nitrite reductase and analysis of factors contributing to beta-propeller folds.
    Journal of molecular biology, Vol. 269, No. 3. (13 June 1997), pp. 440-455.
    by SC Baker, NF Saunders, AC Willis, SJ Ferguson, J Hajdu, V Fülöp
    posted to structure reductase protein nitrite haem cytochrome beta-propeller by neils on 2008-05-11 10:19:58 as **
  • Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.
    Nature, Vol. 389, No. 6649. (25 September 1997), pp. 406-412.
    by PA Williams, V Fülöp, EF Garman, NF Saunders, SJ Ferguson, J Hajdu
    posted to structure reductase protein nitrite mechanism haem crystallography by neils on 2008-05-11 10:18:50 as **
  • notes Computational evidence for the catalytic mechanism of glutaminyl cyclase. A DFT investigation
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Matteo Calvaresi, Marco Garavelli, Andrea Bottoni
    posted to structure protein dft computational catalysis by neils on 2008-05-10 09:12:23 as **
  • Fast protein tertiary structure retrieval based on global surface shape similarity
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (xx 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to structure retrieval protein prediction bioinformatics by neils on 2008-05-09 10:19:56 as **
  • Protein Disorder Is Positively Correlated with Gene Expression in Escherichia coli
    J. Proteome Res. (9 May 2008)
    by Oleg Paliy, Shawn M Gargac, Yugong Cheng, Vladimir N Uversky, Keith A Dunker
    posted to structure protein expression ecoli disorder by neils on 2008-05-09 07:51:04 as **
  • Crystal Structure of the FK506 Binding Domain of Plasmodium falciparum FKBP35 in Complex with FK506
    Biochemistry (9 May 2008)
    by Masayo Kotaka, Hong Ye, Reema Alag, Guangan Hu, Zbynek Bozdech, Peter R Preiser, Ho S Yoon, Julien Lescar
    posted to structure plasmodium ligand fkbp crystallography complexes by neils on 2008-05-09 06:57:49 as ** along with 1 person becarmson
  • SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Lukasz Kurgan, Krzysztof Cios, Ke Chen
    posted to structure sequence protein prediction bioinformatics by neils on 2008-05-02 00:27:57 as **
  • Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS
    Nature, Vol. 453, No. 7191., pp. 124-127.
    by Raz Zarivach, Wanyin Deng, Marija Vuckovic, Heather B Felise, Hai V Nguyen, Samuel I Miller, Brett B Finlay, Natalie CJ Strynadka
    posted to type-iii structure secretion cleavage bacteria by neils on 2008-05-01 02:25:46 as **
  • Calcium-Dependent Heme Structure in the Reduced Forms of the Bacterial Cytochrome c Peroxidase from Paracoccus pantotrophus
    Biochemistry (29 April 2008)
    by Sofia R Pauleta, Yi Lu, Celia F Goodhew, Isabel Moura, Graham W Pettigrew, John A Shelnutt
    posted to structure peroxidase paracoccus haem cytochrome calcium by neils on 2008-04-29 09:21:09 as **
  • An evaluation of automated homology modelling methods at low target template sequence similarity
    Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908.
    by James A Dalton, Richard M Jackson
    posted to structure protein prediction modelling homology evaluation bioinformatics by neils on 2008-04-26 12:05:56 as ** along with 3 people pansapiens chad_davis biehl
  • Constructing templates for protein structure prediction by simulation of protein folding pathways
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Ilona Kifer, Ruth Nussinov, Haim J Wolfson
    posted to structure simulation protein prediction modelling folding by neils on 2008-04-25 01:52:40 as **
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to transduction structure software sites signal sequence proteome proteins protein phosphorylation motifs internet databases binding article-predikin article-nar analysis amino algorithms by neils on 2008-04-24 16:16:06 as ** along with 2 people Evangelia mloewer
  • ROC analysis: applications to the classification of biological sequences and 3D structures
    Brief Bioinform (11 January 2008), bbm064.
    by Paolo Sonego, Andras Kocsor, Sandor Pongor
    posted to structure statistics sequence roc classification by neils on 2008-04-23 13:46:17 as ** along with 3 people spsdigest girschick cjeans
  • The FoldX web server: an online force field.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano
    posted to analysis foldx force-field structure webserver by neils on 2008-04-16 02:40:51 as ** along with 2 people aalibes chad_davis
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to bioinformatics interaction network protein-protein structure by neils on 2008-04-11 01:44:07 as ** along with 2 people grahamc Evangelia
  • The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominately unstructured protein
    Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 571-576.
    by Paulette L Hayes, Betsy L Lytle, Brian F Volkman, Francis C Peterson
    posted to dna-binding human nmr protein structure znf by neils on 2008-04-10 00:01:30 as **
  • Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
    Structure, Vol. 16, No. 4. (8 April 2008), pp. 535-548.
    by Preethi Chandramouli, Maya Topf, Jean-Francois Menetret, Narayanan Eswar, Jamie J Cannone, Robin R Gutell, Andrej Sali, Christopher W Akey
    posted to cryo electron em microscopy modelling ribosome structure by neils on 2008-04-09 23:57:38 as **
  • Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria
    by Tsuyoshi Shirai, Vo S Hung, Katsuhito Morinaka, Tohru Kobayashi, Susumu Ito
    posted to barophile crystallography glucosidase protein structure by neils on 2008-04-09 04:14:21 as **
  • Crystal structure of PAE0151 from <I>Pyrobaculum aerophilum</I>, a PIN-domain (VapC) protein from a toxin-antitoxin operon
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Richard D Bunker, Joanna L Mckenzie, Edward N Baker, Vickery L Arcus
    posted to antitoxin archaea crystallography protein pyrobaculum structure toxin by neils on 2008-04-09 04:13:35 as **
  • How to lose a kink and gain a helix: pH independent conformational changes of the fusion domains from influenza hemagglutinin in heterogeneous lipid bilayers
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Hyunbum Jang, Naveen Michaud-Agrawal, Jennifer M Johnston, Thomas B Woolf
    posted to fusion haemagglutinin influenza lipid protein simulation structure virus by neils on 2008-04-01 23:23:52 as ** along with 1 person sunhwan
  • Fast protein tertiary structure retrieval based on global surface shape similarity.
    Proteins (24 March 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to bioinformatics protein search structure surface by neils on 2008-03-26 23:34:48 as ** along with 1 person CameronNeylon
  • X-ray structure of a prokaryotic pentameric ligand-gated ion channel
    Nature (05 March 2008)
    by Ricarda JC Hilf, Raimund Dutzler
    posted to crystallography ion-channel ligand-gated prokaryotic structure by neils on 2008-03-20 02:28:51 as ** along with 1 person jmccammon
  • Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses
    PLoS Comput Biol, Vol. 4, No. 3. (Mar 2008)
    by Feng J Sun, Gustavo C Anollés
    posted to archaea bioinformatics evolution phylogeny sequence structure trna viruses by neils on 2008-03-12 02:45:33 as **
  • Structure-based prediction of transcription factor binding sites using a protein-DNA docking approach
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Zhijie Liu, Jun-Tao Guo, Ting Li, Ying Xu
    posted to binding bioinformatics docking factor prediction structure transcription by neils on 2008-03-05 01:15:12 as ** along with 1 person aalibes
  • Scan2S: Increasing the precision of PROSITE pattern motifs using secondary structure constraints
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Lucy Skrabanek, Masha Y Niv
    posted to bioinformatics motifs prosite secondary structure by neils on 2008-03-05 01:14:34 as **
  • Protein production and purification.
    Nat Methods, Vol. 5, No. 2. (February 2008), pp. 135-146.
    by S Gräslund, P Nordlund, J Weigelt, J Bray, O Gileadi, S Knapp, U Oppermann, C Arrowsmith, R Hui, J Ming, S Dhe-Paganon, HW Park, A Savchenko, A Yee, A Edwards, R Vincentelli, C Cambillau, R Kim, SH Kim, Z Rao, Y Shi, TC Terwilliger, CY Kim, LW Hung, GS Waldo, Y Peleg, S Albeck, T Unger, O Dym, J Prilusky, JL Sussman, RC Stevens, SA Lesley, IA Wilson, A Joachimiak, F Collart, I Dementieva, MI Donnelly, WH Eschenfeldt, Y Kim, L Stols, R Wu, M Zhou, SK Burley, JS Emtage, JM Sauder, D Thompson, K Bain, J Luz, T Gheyi, F Zhang, S Atwell, SC Almo, JB Bonanno, A Fiser, S Swaminathan, FW Studier, MR Chance, A Sali, TB Acton, R Xiao, L Zhao, LC Ma, JF Hunt, L Tong, K Cunningham, M Inouye, S Anderson, H Janjua, R Shastry, CK Ho, D Wang, H Wang, M Jiang, GT Montelione, DI Stuart, RJ Owens, S Daenke, A Schütz, U Heinemann, S Yokoyama, K Büssow, KC Gunsalus
    posted to expression genomics proteins purification sg structure by neils on 2008-02-01 14:58:52 as ** along with 4 people hchmani Yanno jyuh dchughes
  • Structural adaptation of enzymes to low temperatures
    Protein Eng., Vol. 14, No. 3. (1 March 2001), pp. 141-148.
    by Giulio Gianese, Patrick Argos, Stefano Pascarella
    posted to adaptation enzymes for-thuber psychrophily structure thermal by neils on 2008-01-25 06:43:28 as **
  • Structural adaptation to low temperatures - analysis of the subunit interface of oligomeric psychrophilic enzymes
    FEBS Journal, Vol. 274, No. 17. (September 2007), pp. 4595-4608.
    by Tronelli, Daniele, Maugini, Elisa, Bossa, Francesco, Pascarella, Stefano
    posted to enzymes oligomeric psychrophily structure by neils on 2008-01-25 06:36:19 as **
  • Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes.
    Proteins, Vol. 47, No. 2. (1 May 2002), pp. 236-249.
    by G Gianese, F Bossa, S Pascarella
    posted to enzymes for-thuber mesophily proteins psychrophily structure thermal thermophily by neils on 2008-01-25 06:33:18 as **
  • Structural and genomic correlates of hyperthermostability.
    J Biol Chem, Vol. 275, No. 42. (20 October 2000), pp. 32383-32386.
    by C Cambillau, JM Claverie
    posted to for-thuber genomics hyperthermophily structure thermal by neils on 2008-01-25 06:20:01 as **
  • Genomic correlates of hyperthermostability, an update.
    J Biol Chem, Vol. 278, No. 19. (9 May 2003), pp. 17198-17202.
    by K Suhre, JM Claverie
    posted to for-thuber genomics hyperthermophily protein structure by neils on 2008-01-25 06:11:08 as ** along with 1 person aalibes
  • Accurate structural correlations from maximum likelihood superpositions
    PLoS Computational Biology, Vol. preprint, No. 2008. (1 January 2008), e43.eor.
    by Douglas L Theobald, Deborah S Wuttke
    posted to md nmr pca prediction structure by neils on 2008-01-17 23:48:31 as **
  • Conformational Switching upon Phosphorylation: A Predictive Framework Based on Energy Landscape Principles
    Biochemistry (17 January 2008)
    by J Latzer, T Shen, PG Wolynes
    posted to energy phosphorylation prediction structure by neils on 2008-01-17 23:36:50 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • PDBML: the representation of archival macromolecular structure data in XML
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 988-992.
    by Westbrook John, Ito Nobutoshi, Nakamura Haruki, Henrick Kim, M Berman
    posted to bioinformatics pdbml software structure wwpdb xml by neils on 2008-01-15 01:30:08 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by David Kristensen, Matthew R Ward, Andreas M Lisewski, Serkan Erdin, Brian Chen, Viacheslav Fofanov, Marek Kimmel, Lydia Kavraki, Olivier Lichtarge
    posted to bioinformatics enzymes function prediction structure by neils on 2008-01-12 01:38:13 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Structure of the Human Protein Kinase MPSK1 Reveals an Atypical Activation Loop Architecture.
    Structure, Vol. 16, No. 1. (January 2008), pp. 115-124.
    by J Eswaran, A Bernad, JM Ligos, B Guinea, JE Debreczeni, F Sobott, SA Parker, R Najmanovich, BE Turk, S Knapp
    posted to activation activity kinase loop mpsk1 specificity structure by neils on 2008-01-12 01:37:14 as **
  • Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes.
    FEBS J, Vol. 272, No. 11. (June 2005), pp. 2800-2810.
    by N LaRonde-LeBlanc, T Guszczynski, T Copeland, A Wlodawer
    posted to archaea kinase phosphorylation rio structure by neils on 2008-01-04 07:02:04 as **
  • Structure and activity of the atypical serine kinase Rio1.
    FEBS J, Vol. 272, No. 14. (July 2005), pp. 3698-3713.
    by N Laronde-Leblanc, T Guszczynski, T Copeland, A Wlodawer
    posted to archaea kinase rio structure by neils on 2008-01-04 07:01:01 as **
  • Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases.
    Structure, Vol. 12, No. 9. (September 2004), pp. 1585-1594.
    by N LaRonde-LeBlanc, A Wlodawer
    posted to archaea kinase rio structure by neils on 2008-01-04 07:00:25 as **
  • Predicting gene ontology functions from protein's regional surface structures
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Zhi P Liu, Ling Y Wu, Yong Wang, Luonan Chen, Xiang S Zhang
    posted to function ontology prediction proteins structure by neils on 2007-12-11 06:25:59 as ** along with 1 person tjimenez
  • Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450.
    J Mol Biol, Vol. 322, No. 4. (Sep 2002), pp. 785-797.
    by James E Sillibourne, Diane M Milne, Mikiko Takahashi, Yoshitaka Ono, David W Meek
    posted to acid acids adaptor aethiops amino anchor animals article-predikin carrier casein catalysis cells centrosome cercopithecus cos cytoskeletal data fractions fragments fusion humans isoenzymes kinase kinases male molecular peptide precipitin protein proteins rats recombinant sequence signal specificity structure subcellular substrate tertiary tests transducing by neils on 2007-12-04 03:22:14 as **
  • Phosphorylation of p90 ribosomal S6 kinase (RSK) regulates extracellular signal-regulated kinase docking and RSK activity.
    Mol Cell Biol, Vol. 23, No. 14. (Jul 2003), pp. 4796-4804.
    by Philippe P Roux, Stephanie A Richards, John Blenis
    posted to 90-kda acid amino article-predikin binding cells cultured data epidermal extracellular factor growth homology humans isoenzymes kinase kinases matrix mitogen-activated mitogens molecular mutation phosphorylation protein ribosomal s6 sequence serine signal sites structure tertiary transduction by neils on 2007-12-04 03:22:14 as **
  • Docking interactions in protein kinase and phosphatase networks.
    Curr Opin Struct Biol, Vol. 16, No. 6. (Dec 2006), pp. 676-685.
    by Attila Reményi, Matthew C Good, Wendell A Lim
    posted to allosteric article-predikin binding biological complexes conformation design drug kinase kinases map models molecular multiprotein phosphatases phosphoprotein protein regulation signal signaling sites structure system tertiary transduction by neils on 2007-12-04 03:22:14 as **
  • A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases.
    J Mol Biol, Vol. 361, No. 2. (Aug 2006), pp. 312-326.
    by Michelle Pirruccello, Holger Sondermann, Jeffrey G Pelton, Patricia Pellicena, André Hoelz, Jonathan Chernoff, David E Wemmer, John Kuriyan
    posted to acid activation amino article-predikin binding catalysis catalytic conformation crystallography data dimerization domain enzyme folding homology humans kinases kinetics models molecular mutation p21-activated phosphopeptides phosphorylation protein protein-serine-threonine sequence sites structure tertiary x-ray by neils on 2007-12-04 03:22:14 as **
  • Protein kinase inhibitors: insights into drug design from structure.
    Science, Vol. 303, No. 5665. (Mar 2004), pp. 1800-1805.
    by Martin EM Noble, Jane A Endicott, Louise N Johnson
    posted to adenosine agents antineoplastic article-predikin as binding catalytic clinical conformation design domain drug enzyme humans inhibitors kinase kinases models molecular protein relationship signal sites structure structure-activity tertiary topic transduction trials triphosphate by neils on 2007-12-04 03:22:14 as **
  • Identification of residues which regulate activity of the STE20-related kinase hMINK.
    Biochem Biophys Res Commun, Vol. 300, No. 3. (Jan 2003), pp. 694-698.
    by Jaeseung Lim, Andrew Lennard, Paul W Sheppard, Stuart Kellie
    posted to acid amino antibody article-predikin cell cerevisiae channels cloning data humans jnk kidney kinases line mitogen-activated molecular mutagenesis organ phosphorylation potassium protein proteins protein-serine-threonine relationship saccharomyces sequence site-directed specificity structure structure-activity tertiary voltage-gated by neils on 2007-12-04 03:22:13 as **
  • SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D257-D260.
    by Ivica Letunic, Richard R Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork
    posted to alignment analysis article-nar article-pka-pkg article-predikin biological catalysis catalytic complexes databases domain genomics interface internet models multiprotein protein sequence structure tertiary user-computer by neils on 2007-12-04 03:22:13 as **
  • The active conformation of the PAK1 kinase domain.
    Structure, Vol. 13, No. 5. (May 2005), pp. 769-778.
    by Ming Lei, Michael A Robinson, Stephen C Harrison
    posted to adenosine article-predikin binding data diffraction humans kinases molecular mutation protein protein-serine-threonine sequence sites structure tertiary triphosphate x-ray by neils on 2007-12-04 03:22:13 as **
  • Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases.
    J Mol Biol, Vol. 339, No. 5. (Jun 2004), pp. 1025-1039.
    by A Krupa, G Preethi, N Srinivasan
    posted to acid activation adenosine alignment amino article-predikin catalytic data domain enzyme kinases models molecular phosphorylation protein protein-serine-threonine protein-tyrosine sequence signal structure tertiary transduction triphosphate by neils on 2007-12-04 03:22:13 as **
  • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
    J Mol Biol, Vol. 305, No. 3. (Jan 2001), pp. 567-580.
    by A Krogh, B Larsson, G von Heijne, EL Sonnhammer
    posted to article-nar article-predikin bacterial chains computational databases design fungal genome internet markov membrane of plant porins protein proteins reproducibility research results secondary sensitivity signals software solubility sorting specificity structure by neils on 2007-12-04 03:22:13 as **
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