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neils protein [68 articles]

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  • Cytochrome cd1 structure: unusual haem environments in a nitrite reductase and analysis of factors contributing to beta-propeller folds.
    Journal of molecular biology, Vol. 269, No. 3. (13 June 1997), pp. 440-455.
    by SC Baker, NF Saunders, AC Willis, SJ Ferguson, J Hajdu, V Fülöp
    posted to structure reductase protein nitrite haem cytochrome beta-propeller by neils on 2008-05-11 10:19:58 as **
  • Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.
    Nature, Vol. 389, No. 6649. (25 September 1997), pp. 406-412.
    by PA Williams, V Fülöp, EF Garman, NF Saunders, SJ Ferguson, J Hajdu
    posted to structure reductase protein nitrite mechanism haem crystallography by neils on 2008-05-11 10:18:50 as **
  • Improved success of sparse matrix protein crystallization screening with heterogeneous nucleating agents.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by AS Thakur, G Robin, G Guncar, NF Saunders, J Newman, JL Martin, B Kobe
    posted to screening protein nucleation crystallography by neils on 2008-05-11 10:06:39 as **
  • notes Computational evidence for the catalytic mechanism of glutaminyl cyclase. A DFT investigation
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Matteo Calvaresi, Marco Garavelli, Andrea Bottoni
    posted to structure protein dft computational catalysis by neils on 2008-05-10 09:12:23 as **
  • Fast protein tertiary structure retrieval based on global surface shape similarity
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (xx 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to structure retrieval protein prediction bioinformatics by neils on 2008-05-09 10:19:56 as **
  • Protein Disorder Is Positively Correlated with Gene Expression in Escherichia coli
    J. Proteome Res. (9 May 2008)
    by Oleg Paliy, Shawn M Gargac, Yugong Cheng, Vladimir N Uversky, Keith A Dunker
    posted to structure protein expression ecoli disorder by neils on 2008-05-09 07:51:04 as **
  • The Leucine-Rich Repeat Domain of Internalin B Folds along a Polarized N-Terminal Pathway
    Structure, Vol. 16 (May 2008), pp. 705-714.
    by Naomi Courtemanche, Doug Barrick
    posted to repeat proteins protein pathway lrr leucine folding by neils on 2008-05-07 02:37:18 as **
  • Vertebrate Genomes Code Excess Proteins with Charge Periodicity of 28 Residues
    J Biochem, Vol. 143, No. 5. (1 May 2008), pp. 661-665.
    by Runcong Ke, Noriyuki Sakiyama, Ryusuke Sawada, Masashi Sonoyama, Shigeki Mitaku
    posted to vertebrate sequences protein periodicity nuclear genomics charge by neils on 2008-05-06 14:13:37 as **
  • SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Lukasz Kurgan, Krzysztof Cios, Ke Chen
    posted to structure sequence protein prediction bioinformatics by neils on 2008-05-02 00:27:57 as **
  • An evaluation of automated homology modelling methods at low target template sequence similarity
    Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908.
    by James A Dalton, Richard M Jackson
    posted to structure protein prediction modelling homology evaluation bioinformatics by neils on 2008-04-26 12:05:56 as ** along with 3 people pansapiens chad_davis biehl
  • Constructing templates for protein structure prediction by simulation of protein folding pathways
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Ilona Kifer, Ruth Nussinov, Haim J Wolfson
    posted to structure simulation protein prediction modelling folding by neils on 2008-04-25 01:52:40 as **
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to transduction structure software sites signal sequence proteome proteins protein phosphorylation motifs internet databases binding article-predikin article-nar analysis amino algorithms by neils on 2008-04-24 16:16:06 as ** along with 2 people Evangelia mloewer
  • Pfam 10 years on: 10 000 families and still growing.
    Brief Bioinform (15 March 2008)
    by Stephen John J Sammut, Robert D D Finn, Alex Bateman
    posted to protein pfam hmm family classification by neils on 2008-04-23 13:49:11 as ** along with 2 people renatomilani dullhunk
  • Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Wasna Viratyosin, Supawadee Ingsriswang, Eakasit Pacharawongsakda, Prasit Palittapongarnpim
    posted to bacteria bioinformatics genomics leptospira localisation membrane pathogen prediction protein scl secretion by neils on 2008-04-21 05:05:55 as ** along with 1 person sitake
  • The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominately unstructured protein
    Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 571-576.
    by Paulette L Hayes, Betsy L Lytle, Brian F Volkman, Francis C Peterson
    posted to dna-binding human nmr protein structure znf by neils on 2008-04-10 00:01:30 as **
  • Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria
    by Tsuyoshi Shirai, Vo S Hung, Katsuhito Morinaka, Tohru Kobayashi, Susumu Ito
    posted to barophile crystallography glucosidase protein structure by neils on 2008-04-09 04:14:21 as **
  • Crystal structure of PAE0151 from <I>Pyrobaculum aerophilum</I>, a PIN-domain (VapC) protein from a toxin-antitoxin operon
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Richard D Bunker, Joanna L Mckenzie, Edward N Baker, Vickery L Arcus
    posted to antitoxin archaea crystallography protein pyrobaculum structure toxin by neils on 2008-04-09 04:13:35 as **
  • How to lose a kink and gain a helix: pH independent conformational changes of the fusion domains from influenza hemagglutinin in heterogeneous lipid bilayers
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Hyunbum Jang, Naveen Michaud-Agrawal, Jennifer M Johnston, Thomas B Woolf
    posted to fusion haemagglutinin influenza lipid protein simulation structure virus by neils on 2008-04-01 23:23:52 as ** along with 1 person sunhwan
  • ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 901-907.
    by Ian M Overton, Gianandrea Padovani, Mark A Girolami, Geoffrey J Barton
    posted to bioinformatics crystallography prediction propensity protein sg by neils on 2008-03-26 23:39:33 as **
  • Fast protein tertiary structure retrieval based on global surface shape similarity.
    Proteins (24 March 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to bioinformatics protein search structure surface by neils on 2008-03-26 23:34:48 as ** along with 1 person CameronNeylon
  • Biological roles of specific peptides in enzymes
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Yasmine Meroz, David Horn
    posted to bioinformatics enzyme function peptides protein by neils on 2008-02-28 23:51:36 as **
  • Genomic correlates of hyperthermostability, an update.
    J Biol Chem, Vol. 278, No. 19. (9 May 2003), pp. 17198-17202.
    by K Suhre, JM Claverie
    posted to for-thuber genomics hyperthermophily protein structure by neils on 2008-01-25 06:11:08 as ** along with 1 person aalibes
  • Statistical analysis of domains in interacting protein pairs
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001.
    by MW Nye, Berzuini Carlo, R Gilks, Babu M Madan, A Teichmann
    posted to domains interaction protein statistics by neils on 2008-01-10 05:27:14 as ** along with 5 people and 1 group lfriedl chad_davis wnpx iris_2001 phoenixzxl kdl
  • A new computational approach to analyze human protein complexes and predict novel protein interactions
    Genome Biology, Vol. 8, No. 12. (2007)
    by Sara Zanivan, Ilaria Cascone, Chiara Peyron, Ivan Molineris, Serena Marchio, Michele Caselle, Federico Bussolino
    posted to bioinformatics interaction kinase p21-activated prediction protein by neils on 2007-12-05 01:24:31 as ** along with 2 people grahamc barriot
  • Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment.
    Cell Cycle, Vol. 4, No. 1. (Jan 2005), pp. 52-56.
    by Guozhi Zhu, Yin Liu, Stephen Shaw
    posted to acid activation amino article-predikin enzyme fragments humans interaction kinases mapping peptide peptides phosphorylation protein sequence signal specificity substrate transduction by neils on 2007-12-04 03:22:14 as **
  • GPS: a comprehensive www server for phosphorylation sites prediction.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187.
    by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
    posted to analysis article-nar article-predikin internet kinases microfilament phosphoproteins phosphorylation protein proteins sequence software specificity substrate tissue by neils on 2007-12-04 03:22:14 as **
  • PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
    BMC Bioinformatics, Vol. 7 (2006)
    by Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao
    posted to alignment amino analysis article-nar article-predikin bayes binding data kinases molecular phosphorylation protein sequence sites software theorem by neils on 2007-12-04 03:22:14 as **
  • Calcium/calmodulin-dependent protein kinase II (CaMKII) localization acts in concert with substrate targeting to create spatial restriction for phosphorylation.
    J Biol Chem, Vol. 280, No. 10. (Mar 2005), pp. 9210-9216.
    by Jennifer Tsui, Masaki Inagaki, Howard Schulman
    posted to article-predikin calcium-calmodulin-dependent cell chain fusion humans kinase kinases kinetics line membrane microdomains phosphorylation polymerase protein proteins reaction recombinant signal transduction transfection transport type by neils on 2007-12-04 03:22:14 as **
  • Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450.
    J Mol Biol, Vol. 322, No. 4. (Sep 2002), pp. 785-797.
    by James E Sillibourne, Diane M Milne, Mikiko Takahashi, Yoshitaka Ono, David W Meek
    posted to acid acids adaptor aethiops amino anchor animals article-predikin carrier casein catalysis cells centrosome cercopithecus cos cytoskeletal data fractions fragments fusion humans isoenzymes kinase kinases male molecular peptide precipitin protein proteins rats recombinant sequence signal specificity structure subcellular substrate tertiary tests transducing by neils on 2007-12-04 03:22:14 as **
  • Phosphorylation of p90 ribosomal S6 kinase (RSK) regulates extracellular signal-regulated kinase docking and RSK activity.
    Mol Cell Biol, Vol. 23, No. 14. (Jul 2003), pp. 4796-4804.
    by Philippe P Roux, Stephanie A Richards, John Blenis
    posted to 90-kda acid amino article-predikin binding cells cultured data epidermal extracellular factor growth homology humans isoenzymes kinase kinases matrix mitogen-activated mitogens molecular mutation phosphorylation protein ribosomal s6 sequence serine signal sites structure tertiary transduction by neils on 2007-12-04 03:22:14 as **
  • Docking interactions in protein kinase and phosphatase networks.
    Curr Opin Struct Biol, Vol. 16, No. 6. (Dec 2006), pp. 676-685.
    by Attila Reményi, Matthew C Good, Wendell A Lim
    posted to allosteric article-predikin binding biological complexes conformation design drug kinase kinases map models molecular multiprotein phosphatases phosphoprotein protein regulation signal signaling sites structure system tertiary transduction by neils on 2007-12-04 03:22:14 as **
  • A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases.
    J Mol Biol, Vol. 361, No. 2. (Aug 2006), pp. 312-326.
    by Michelle Pirruccello, Holger Sondermann, Jeffrey G Pelton, Patricia Pellicena, André Hoelz, Jonathan Chernoff, David E Wemmer, John Kuriyan
    posted to acid activation amino article-predikin binding catalysis catalytic conformation crystallography data dimerization domain enzyme folding homology humans kinases kinetics models molecular mutation p21-activated phosphopeptides phosphorylation protein protein-serine-threonine sequence sites structure tertiary x-ray by neils on 2007-12-04 03:22:14 as **
  • How do protein kinases recognize their substrates?
    Biochim Biophys Acta, Vol. 1314, No. 3. (Dec 1996), pp. 191-225.
    by LA Pinna, M Ruzzene
    posted to acid amino animals article-predikin consensus data kinases library molecular peptide phosphorylation protein sequence specificity substrate by neils on 2007-12-04 03:22:14 as **
  • Protein kinase inhibitors: insights into drug design from structure.
    Science, Vol. 303, No. 5665. (Mar 2004), pp. 1800-1805.
    by Martin EM Noble, Jane A Endicott, Louise N Johnson
    posted to adenosine agents antineoplastic article-predikin as binding catalytic clinical conformation design domain drug enzyme humans inhibitors kinase kinases models molecular protein relationship signal sites structure structure-activity tertiary topic transduction trials triphosphate by neils on 2007-12-04 03:22:14 as **
  • Active Ca2+/calmodulin-dependent protein kinase II gamma B impairs positive selection of T cells by modulating TCR signaling.
    J Immunol, Vol. 175, No. 2. (Jul 2005), pp. 656-664.
    by Maureen A Mcgargill, Leslie L Sharp, Jack D Bui, Stephen M Hedrick, Sébastien Calbo
    posted to antigens article-predikin c57bl ca2-calmodulin calcium cd3 cell dependent differentiation domains female fluid homology humans inbred intracellular isoenzymes kinase knockout line lymphocyte male mice p56lck peptides phosphorylation protein proteins protein-tyrosine-phosphatase receptors signal signaling specific src subsets t-cell t-lymphocyte transduction transgenic tumor tyrosine animals antigen by neils on 2007-12-04 03:22:14 as **
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (Jun 2007), pp. 1415-1426.
    by Rune Linding, Lars J Jensen, Gerard J Ostheimer, Marcel ATM van Vugt, Claus Jørgensen, Ioana M Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin G Park, Leona D Samson, James R Woodgett, Robert B Russell, Peer Bork, Michael B Yaffe, Tony Pawson
    posted to article-predikin binding biology cdc2 cell computational cycle damage dna dna-binding enzymes factors glycogen humans intracellular kinase kinases peptides phosphoproteins phosphorylation protein proteins protein-serine-threonine proteomics repair repressor signal signaling sites software suppressor synthase transcription transduction tumor by neils on 2007-12-04 03:22:14 as **
  • Protein disorder prediction: implications for structural proteomics.
    Structure, Vol. 11, No. 11. (Nov 2003), pp. 1453-1459.
    by Rune Linding, Lars J Jensen, Francesca Diella, Peer Bork, Toby J Gibson, Robert B Russell
    posted to article-nar article-predikin circular computer conformation crystallography dichroism domains homology ligands magnetic models networks neural protein proteins proteome rays resonance sensitivity specificity spectroscopy src statistics temperature theoretical topic ultraviolet x-ray by neils on 2007-12-04 03:22:13 as **
  • Identification of residues which regulate activity of the STE20-related kinase hMINK.
    Biochem Biophys Res Commun, Vol. 300, No. 3. (Jan 2003), pp. 694-698.
    by Jaeseung Lim, Andrew Lennard, Paul W Sheppard, Stuart Kellie
    posted to acid amino antibody article-predikin cell cerevisiae channels cloning data humans jnk kidney kinases line mitogen-activated molecular mutagenesis organ phosphorylation potassium protein proteins protein-serine-threonine relationship saccharomyces sequence site-directed specificity structure structure-activity tertiary voltage-gated by neils on 2007-12-04 03:22:13 as **
  • SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D257-D260.
    by Ivica Letunic, Richard R Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork
    posted to alignment analysis article-nar article-pka-pkg article-predikin biological catalysis catalytic complexes databases domain genomics interface internet models multiprotein protein sequence structure tertiary user-computer by neils on 2007-12-04 03:22:13 as **
  • The active conformation of the PAK1 kinase domain.
    Structure, Vol. 13, No. 5. (May 2005), pp. 769-778.
    by Ming Lei, Michael A Robinson, Stephen C Harrison
    posted to adenosine article-predikin binding data diffraction humans kinases molecular mutation protein protein-serine-threonine sequence sites structure tertiary triphosphate x-ray by neils on 2007-12-04 03:22:13 as **
  • Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases.
    J Mol Biol, Vol. 339, No. 5. (Jun 2004), pp. 1025-1039.
    by A Krupa, G Preethi, N Srinivasan
    posted to acid activation adenosine alignment amino article-predikin catalytic data domain enzyme kinases models molecular phosphorylation protein protein-serine-threonine protein-tyrosine sequence signal structure tertiary transduction triphosphate by neils on 2007-12-04 03:22:13 as **
  • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
    J Mol Biol, Vol. 305, No. 3. (Jan 2001), pp. 567-580.
    by A Krogh, B Larsson, G von Heijne, EL Sonnhammer
    posted to article-nar article-predikin bacterial chains computational databases design fungal genome internet markov membrane of plant porins protein proteins reproducibility research results secondary sensitivity signals software solubility sorting specificity structure by neils on 2007-12-04 03:22:13 as **
  • Substrate specificity of protein kinases and computational prediction of substrates.
    Biochim Biophys Acta, Vol. 1754, No. 1-2. (Dec 2005), pp. 200-209.
    by Bostjan Kobe, Thorsten Kampmann, Jade K Forwood, Pawel Listwan, Ross I Brinkworth
    posted to article-nar article-predikin binding biology computational kinases models molecular peptides phosphatases phosphoprotein phosphorylation protein secondary sites specificity structure substrate by neils on 2007-12-04 03:22:13 as **
  • Prediction of phosphorylation sites using SVMs.
    Bioinformatics, Vol. 20, No. 17. (Nov 2004), pp. 3179-3184.
    by Jong H Kim, Juyoung Lee, Bermseok Oh, Kuchan Kimm, Insong Koh
    posted to algorithms alignment analysis article-predikin artificial binding chemical computer intelligence models molecular phosphorylation phosphotransferases protein proteins relationship sequence simulation sites structure-activity by neils on 2007-12-04 03:22:13 as **
  • Protein kinases and protein phosphatases in prokaryotes: a genomic perspective.
    FEMS Microbiol Lett, Vol. 206, No. 1. (Jan 2002), pp. 1-8.
    by Peter J Kennelly
    posted to article-predikin cells kinases phosphatases phosphoprotein phosphorylation prokaryotic protein by neils on 2007-12-04 03:22:13 as **
  • Archaeal protein kinases and protein phosphatases: insights from genomics and biochemistry.
    Biochem J, Vol. 370, No. Pt 2. (Mar 2003), pp. 373-389.
    by Peter J Kennelly
    posted to activation archaea archaeal article-predikin enzyme kinases phosphatases phosphoprotein phosphorus phylogeny protein proteins radioisotopes by neils on 2007-12-04 03:22:13 as **
  • Biochemical characterization of the tobacco 42-kD protein kinase activated by osmotic stress.
    Plant Physiol, Vol. 136, No. 2. (Oct 2004), pp. 3255-3265.
    by Anna Kelner, Izabela Pekala, Szymon Kaczanowski, Grazyna Muszynska, Grahame D Hardie, Grazyna Dobrowolska
    posted to acid activation adenosine amino article-predikin calcium chlorides data enzyme evolution homology inhibitors kinase kinases magnesium manganese molecular monophosphate osmotic phylogeny pressure protein sequence specificity substrate tobacco water by neils on 2007-12-04 03:22:13 as **
  • C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats.
    J Biol Chem, Vol. 279, No. 24. (Jun 2004), pp. 24957-24964.
    by Janice C Jones, Hemali P Phatnani, Timothy A Haystead, Justin A Macdonald, Munir S Alam, Arno L Greenleaf
    posted to acid amino antibodies article-predikin data kinases molecular monoclonal phosphorylation polymerase protein repetitive rna saccharomycetales sequence sequences serine specificity substrate by neils on 2007-12-04 03:22:13 as **
  • Kinomics: methods for deciphering the kinome.
    Nat Methods, Vol. 2, No. 1. (Jan 2005), pp. 17-25.
    by Sam A Johnson, Tony Hunter
    posted to adenosine animals article-nar article-predikin biology computational computer-assisted genetic genome humans image kinases mass phosphorylation processing protein proteome software spectrometry structure techniques tertiary triphosphate by neils on 2007-12-04 03:22:13 as **
  • KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W226-W229.
    by Hsien Da Huang, Tzong Y Lee, Shih W Tzeng, Jorng T Horng
    posted to analysis article-nar article-predikin biology chains computational internet kinases markov phosphoproteins phosphorylation protein sequence software by neils on 2007-12-04 03:22:12 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/neils/tag/protein

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