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neils bioinformatics [90 articles]

最近 neils さんのライブラリに追加された論文の中から タグ bioinformatics. You can also see everyone's bioinformatics.
  • The statistical significance of nucleotide position-weight matrix matches
    Comput. Appl. Biosci., Vol. 12, No. 5. (1 October 1996), pp. 431-439.
    by Jean-Michel Claverie, Stephane Audic
    posted to statistics pwm nucleotide matrix bioinformatics by neils on 2008-05-14 06:41:04 as ** along with 2 people and 2 groups samal bsmagic Bioinformatics bioinplant
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to protein-protein prediction network interactome interaction human bioinformatics by neils on 2008-05-14 04:39:31 as ** along with 8 people chrissp100 zwang roys brianb friendpine Ema tmmurali phoenixzxl
  • The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information
    Nucl. Acids Res. (13 May 2008), gkn279.
    by Neil F Saunders, Bostjan Kobe
    posted to webserver specificity predikin prediction peptide kinases bioinformatics by neils on 2008-05-14 03:57:42 as **
  • Biocomputational prediction of small non-coding RNAs in Streptomyces
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Josef Panek, Jan Bobek, Karel Mikulik, Marek Basler, Jiri Vohradsky
    posted to streptomyces prediction ncrna bioinformatics bacteria by neils on 2008-05-13 13:09:48 as **
  • notes In pursuit of virtual lead optimization: The role of the receptor structure and ensembles in accurate docking
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Bolstad, Amy C Anderson
    posted to virtual screening optimisation lead docking bioinformatics by neils on 2008-05-13 09:16:16 as **
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to protein-protein pdb interface interaction complexes bioinformatics by neils on 2008-05-13 00:10:20 as ** along with 1 person phoenixzxl
  • An online database for the detection of novel archaeal sequences in human ESTs.
    Bioinformatics (Oxford, England), Vol. 20, No. 15. (12 October 2004), pp. 2361-2362.
    by NF Saunders, PM Curmi, R Cavicchioli
    posted to pathogen genomics est database bioinformatics archaea by neils on 2008-05-11 10:26:19 as **
  • Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii.
    Genome Res, Vol. 13, No. 7. (July 2003), pp. 1580-1588.
    by NF Saunders, T Thomas, PM Curmi, JS Mattick, E Kuczek, R Slade, J Davis, PD Franzmann, D Boone, K Rusterholtz, R Feldman, C Gates, S Bench, K Sowers, K Kadner, A Aerts, P Dehal, C Detter, T Glavina, S Lucas, P Richardson, F Larimer, L Hauser, M Land, R Cavicchioli
    posted to psychrophily methanogenium methanococcoides genomics bioinformatics antarctic by neils on 2008-05-11 10:24:46 as ** along with 1 person bpb
  • Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution.
    Journal of molecular evolution, Vol. 59, No. 4. (October 2004), pp. 437-447.
    by TH Roberts, J Hejgaard, NF Saunders, R Cavicchioli, PM Curmi
    posted to serpin sequence evolution bioinformatics analysis by neils on 2008-05-11 10:11:58 as **
  • Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii.
    Journal of proteome research, Vol. 4, No. 2. (r 2005), pp. 464-472.
    by NF Saunders, A Goodchild, M Raftery, M Guilhaus, PM Curmi, R Cavicchioli
    posted to psychrophily proteins prediction methanococcoides function bioinformatics archaea antarctic by neils on 2008-05-11 10:09:25 as **
  • Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to sequences motifs discovery bioinformatics by neils on 2008-05-09 13:29:46 as ** along with 4 people dquest Stew gjuggler cabbagesofdoom
  • Fast protein tertiary structure retrieval based on global surface shape similarity
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (xx 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to structure retrieval protein prediction bioinformatics by neils on 2008-05-09 10:19:56 as **
  • The minimum information about a genome sequence (MIGS) specification
    Nat Biotech, Vol. 26, No. 5. (May 2008), pp. 541-547.
    by Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J Allen, Samuel V Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude Depamphilis, Robert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank O Glockner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E Lewis, Kelvin Li, Allyson L Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta Sansone, Andrew Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat
    posted to standards sequencing information genomics bioinformatics by neils on 2008-05-09 00:35:47 as ** along with 1 person dullhunk
  • Genome analysis of the platypus reveals unique signatures of evolution
    Nature, Vol. 453, No. 7192. (May 2008), pp. 175-183.
    posted to platypus genome evolution bioinformatics by neils on 2008-05-08 00:43:58 as ** along with 9 people pbull Tominator ealloza hpaces lp2 natstreet cabbagesofdoom gjuggler fhsantanna
  • SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Lukasz Kurgan, Krzysztof Cios, Ke Chen
    posted to structure sequence protein prediction bioinformatics by neils on 2008-05-02 00:27:57 as **
  • A Quick Guide for Computer-Assisted Instruction in Computational Biology and Bioinformatics
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Manuel J Costa, Eduardo Galembeck, Guilherme A Marson, Bayardo B Torres
    posted to teaching computer-assisted bioinformatics by neils on 2008-04-28 06:38:52 as **
  • An evaluation of automated homology modelling methods at low target template sequence similarity
    Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908.
    by James A Dalton, Richard M Jackson
    posted to structure protein prediction modelling homology evaluation bioinformatics by neils on 2008-04-26 12:05:56 as ** along with 3 people pansapiens chad_davis biehl
  • NetworKIN: a resource for exploring cellular phosphorylation networks
    Nucl. Acids Res., Vol. 36 (2008), pp. D695-699.
    by Rune Linding, Lars J Jensen, Adrian Pasculescu, Marina Olhovsky, Karen Colwill, Peer Bork, Michael B Yaffe, Tony Pawson
    posted to transduction signal prediction phosphorylation networks bioinformatics by neils on 2008-04-24 16:22:01 as **
  • Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Wasna Viratyosin, Supawadee Ingsriswang, Eakasit Pacharawongsakda, Prasit Palittapongarnpim
    posted to bacteria bioinformatics genomics leptospira localisation membrane pathogen prediction protein scl secretion by neils on 2008-04-21 05:05:55 as ** along with 1 person sitake
  • Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Sourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan, Trey Ideker
    posted to bioinformatics complexes genetic interaction networks prediction protein-protein by neils on 2008-04-21 03:13:52 as **
  • Predicting Co-Complexed Protein Pairs from Heterogeneous Data
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Jian Qiu, William S Noble
    posted to bioinformatics complexes interaction kernels prediction protein-protein by neils on 2008-04-21 03:12:15 as ** along with 1 person brianb
  • Indicators from archaeal secretomes.
    Microbiological research (11 April 2008)
    by Mazen Saleh, Catharine Song, Sabah Nasserulla, L G G Leduc
    posted to analysis archaea bioinformatics genomics prediction secretion by neils on 2008-04-18 12:25:45 as **
  • Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish Varshney, Gajendra Raghava
    posted to bioinformatics erythrocyte machine-learning malaria prediction proteins pssm secretion svm by neils on 2008-04-17 00:31:17 as ** along with 1 person arNQ
  • Identification of Phosphorylation Sites in Protein Kinase A Substrates Using Artificial Neural Networks and Mass Spectrometry
    J. Proteome Res., Vol. 3, No. 3. (14 June 2004), pp. 426-433.
    by M Hjerrild, A Stensballe, TE Rasmussen, CB Kofoed, N Blom, T Sicheritz-Ponten, MR Larsen, S Brunak, ON Jensen, S Gammeltoft
    posted to article-predikin bioinformatics mass netphosk neural-network phosphorylation prediction spectrometry by neils on 2008-04-16 04:05:30 as **
  • Python - All a Scientist Needs
    (12 Mar 2008)
    by Julius B Lucks
    posted to arxiv bioinformatics programming python by neils on 2008-04-15 03:31:52 as ** along with 1 person brianb
  • A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Peng Wang, John Sidney, Courtney Dow, Bianca Mothé, Alessandro Sette, Bjoern Peters
    posted to affinity binding bioinformatics evaluation mhc peptide prediction by neils on 2008-04-15 03:01:11 as **
  • Ligand binding affinity prediction by linear interaction energy methods
    Journal of Computer-Aided Molecular Design, Vol. 12, No. 1. (1 January 1998), pp. 27-35.
    by Tomas Hansson, John Marelius, Johan Åqvist
    posted to affinity binding bioinformatics lie ligand prediction by neils on 2008-04-15 02:18:54 as **
  • Analysis of Aspergillus nidulans metabolism at the genome-scale
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Helga David, Ilknur Ozcelik, Gerald Hofmann, Jens Nielsen
    posted to aspergillus bioinformatics fungi genomics metabolomics orfan pathways by neils on 2008-04-11 10:07:46 as **
  • Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Shibu Yooseph, Weizhong Li, Granger Sutton
    posted to bioinformatics classification clustering genomics metagenomics microbial sequences by neils on 2008-04-11 01:50:41 as **
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to bioinformatics interaction network protein-protein structure by neils on 2008-04-11 01:44:07 as ** along with 2 people grahamc Evangelia
  • Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches
    Bioinformatics (2008)
    by Marianne M Lee, Michael K Chan, Ralf Bundschuh
    posted to analysis bioinformatics psi-blast sequence statistics by neils on 2008-04-11 01:32:11 as **
  • Analysis of the residue-residue coevolution network and the functionally important residues in proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Byung-Chul Lee, Keunwan Park, Dongsup Kim
    posted to acids amino bioinformatics coevolution function network residues by neils on 2008-04-10 13:28:46 as ** along with 7 people and 2 groups wilbur friendpine barry sobolevnrm mingzhi penpen926 scienbox structural_bioinformatics baker-group
  • Molecular Signature of Hypersaline Adaptation: Insights from Genome and Proteome Composition of Halophilic Prokaryotes
    Genome Biology, Vol. 9, No. 4. (2008)
    by Sandip Paul, Sumit Bag, Sabyasachi Das, Eric Harvill, Chitra Dutta
    posted to adaptation bioinformatics comparative genomics halophile prokaryotes proteomics by neils on 2008-04-09 09:48:49 as ** along with 2 people Saby2000 rowenabrennavart
  • Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Ignacio E Sánchez, Pedro Beltrao, Francois Stricher, Joost Schymkowitz, Jesper F Borg, Frederic Rousseau, Luis Serrano
    posted to bioinformatics interaction protein-protein sh2 specificity by neils on 2008-04-09 02:23:44 as **
  • An online literature mining tool for protein phosphorylation.
    Bioinformatics (27 April 2006)
    by X Yuan, Z Z Z Hu, H T T Wu, M Torii, M Narayanaswamy, K E E Ravikumar, K Vijay-Shanker, C H H Wu
    posted to bioinformatics phosphorylation software text-mining webserver by neils on 2008-04-07 01:57:56 as ** along with 2 people and 2 groups irenas yas dbk-lab T_lab
  • Beyond the clause: extraction of phosphorylation information from medline abstracts.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by M Narayanaswamy, KE Ravikumar, K Vijay-Shanker
    posted to bioinformatics medline phosphorylation text-mining by neils on 2008-04-07 01:51:53 as ** along with 3 people Enro miguel zlu
  • Large-Scale Analysis of Gene Clustering in Bacteria
    Genome Res. (2008)
    by Qingwu Yang, Sing H Sze
    posted to bacteria bioinformatics clustering genomics operon by neils on 2008-04-05 02:38:06 as **
  • Information quality in proteomics
    Brief Bioinform, Vol. 9, No. 2. (1 March 2008), pp. 174-188.
    by David A Stead, Norman W Paton, Paolo Missier, Suzanne M Embury, Cornelia Hedeler, Binling Jin, Alistair J Brown, Alun Preece
    posted to bioinformatics data information management proteomics quality by neils on 2008-03-31 00:33:15 as ** along with 1 person renatomilani
  • The HUPO proteomics standards initiative easing communication and minimizing data loss in a changing world.
    Brief Bioinform (7 December 2007)
    by Sandra Orchard, Henning Hermjakob
    posted to bioinformatics data hupo proteomics standards by neils on 2008-03-31 00:31:44 as ** along with 1 person jyuh
  • Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
    Brief Bioinform (28 September 2007), bbm046.
    by Jason W Wong, Matthew J Sullivan, Gerard Cagney
    posted to bioinformatics computational lc-ms mass proteomics quantitation spectrometry by neils on 2008-03-31 00:30:35 as ** along with 2 people jyuh olberd
  • Algorithms and tools for analysis and management of mass spectrometry data
    Brief Bioinform (20 March 2008), bbn007.
    by Pierangelo Veltri
    posted to algorithms bioinformatics data mass proteomics spectrometry statistics by neils on 2008-03-31 00:29:12 as ** along with 1 person jyuh
  • Classification of mass-spectrometric data in clinical proteomics using learning vector quantization methods
    Brief Bioinform, Vol. 9, No. 2. (1 March 2008), pp. 129-143.
    by Thomas Villmann, Frank-Michael Schleif, Markus Kostrzewa, Axel Walch, Barbara Hammer
    posted to bioinformatics classification clinical mass proteomics spectrometry statistics by neils on 2008-03-31 00:27:55 as **
  • Machine learning methods for predictive proteomics.
    Brief Bioinform (29 February 2008)
    by Annalisa Barla, Giuseppe Jurman, Samantha Riccadonna, Stefano Merler, Marco Chierici, Cesare Furlanello
    posted to bioinformatics machine-learning proteomics statistics svm by neils on 2008-03-31 00:26:13 as ** along with 2 people jfr phoenixzxl
  • Approaches to dimensionality reduction in proteomic biomarker studies
    Brief Bioinform, Vol. 9, No. 2. (1 March 2008), pp. 102-118.
    by Melanie Hilario, Alexandros Kalousis
    posted to bioinformatics biomarkers proteomics statistics by neils on 2008-03-31 00:25:07 as ** along with 1 person jyuh
  • LocateP: Genome-scale subcellular-location predictor for bacterial proteins
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Miaomiao Zhou, Jos Boekhorst, Christof Francke, Roland Siezen
    posted to bacterial bioinformatics genomics localisation prediction scl subcellular by neils on 2008-03-27 23:16:35 as **
  • PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell Brittnacher
    posted to bioinformatics conservation genomics neighbourhood prokaryotic synteny by neils on 2008-03-26 23:50:21 as ** along with 2 people treangen maximilianh
  • ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 901-907.
    by Ian M Overton, Gianandrea Padovani, Mark A Girolami, Geoffrey J Barton
    posted to bioinformatics crystallography prediction propensity protein sg by neils on 2008-03-26 23:39:33 as **
  • Fast protein tertiary structure retrieval based on global surface shape similarity.
    Proteins (24 March 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to bioinformatics protein search structure surface by neils on 2008-03-26 23:34:48 as ** along with 1 person CameronNeylon
  • PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis.
    Proteins (7 February 2008)
    by Jia-Ming M Chang, Emily Chia-Yu C Su, Allan Lo, Hua-Sheng S Chiu, Ting-Yi Y Sung, Wen-Lian L Hsu
    posted to bioinformatics localisation prediction scl semantic subcellular by neils on 2008-03-26 02:26:32 as **
  • Estimating the extent of horizontal gene transfer in metagenomic sequences
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Javier Tamames, Andres Moya
    posted to bioinformatics gene hgt horizontal metagenomics transfer by neils on 2008-03-25 01:45:26 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/neils/tag/bioinformatics

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