An online literature mining tool for protein phosphorylation.

@article{citeulike:617084, abstract = {A web-based version of the RLIMS-P literature mining system was developed for online mining of protein phosphorylation information from MEDLINE abstracts. The online tool presents extracted phosphorylation objects (phosphorylated proteins, phosphorylation sites, and protein kinases) in summary tables and full reports with evidence-tagged abstracts. The tool further allows mapping of phosphorylated proteins to protein entries in the UniProt Knowledgebase based on PubMed ID and/or protein name. The literature mining, coupled with database association, allows retrieval of rich biological information for the phosphorylated proteins and facilitates database annotation of phosphorylation features. AVAILABILITY: The online RLIMS-P is freely accessible at http://pir.georgetown.edu/iprolink/rlimsp. Supplementary Data: http://pir.georgetown.edu/iprolink/rlimsp/supplement/.}, address = {Protein Information Resource, Department of Biochemistry and Molecular \& Cellular Biology, Georgetown University Medical Center, Washington, DC 20007, USA.}, author = {Yuan, X and Hu, Z Z Z. and Wu, H T T. and Torii, M and Narayanaswamy, M and Ravikumar, K E E. and Vijay-Shanker, K and Wu, C H H. }, citeulike-article-id = {617084}, issn = {1367-4803}, journal = {Bioinformatics}, keywords = {bioinformatics, phosphorylation, software, text-mining, webserver}, month = {April}, posted-at = {2008-04-07 01:57:56}, priority = {2}, title = {An online literature mining tool for protein phosphorylation.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/16644790}, year = {2006} }

TY - JOUR ID - citeulike:617084 L3 - citeulike-article-id:617084 TI - An online literature mining tool for protein phosphorylation. JF - Bioinformatics AD - Protein Information Resource, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC 20007, USA. SN - 1367-4803 N2 - A web-based version of the RLIMS-P literature mining system was developed for online mining of protein phosphorylation information from MEDLINE abstracts. The online tool presents extracted phosphorylation objects (phosphorylated proteins, phosphorylation sites, and protein kinases) in summary tables and full reports with evidence-tagged abstracts. The tool further allows mapping of phosphorylated proteins to protein entries in the UniProt Knowledgebase based on PubMed ID and/or protein name. The literature mining, coupled with database association, allows retrieval of rich biological information for the phosphorylated proteins and facilitates database annotation of phosphorylation features. AVAILABILITY: The online RLIMS-P is freely accessible at http://pir.georgetown.edu/iprolink/rlimsp. Supplementary Data: http://pir.georgetown.edu/iprolink/rlimsp/supplement/. KW - bioinformatics KW - phosphorylation KW - software KW - text-mining KW - webserver AU - Yuan, X AU - Hu, Z Z AU - Wu, H T AU - Torii, M AU - Narayanaswamy, M AU - Ravikumar, K E AU - Vijay-Shanker, K AU - Wu, C H PY - 2006/04/27/ UR - http://view.ncbi.nlm.nih.gov/pubmed/16644790 ER -