Pfam: clans, web tools and services.

by: Robert D Finn, Jaina Mistry, Benjamin S Böckler, Sam G Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R Eddy, Erik LL Sonnhammer, Alex Bateman

Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D247-D251.

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http://dx.doi.org/10.1093/nar/gkj149

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Abstract

Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).

@article{Finn2006, abstract = {Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).}, author = {Finn, Robert D. and Mistry, Jaina and B\"{o}ckler, Benjamin S. and Jones, Sam G. and Hollich, Volker and Lassmann, Timo and Moxon, Simon and Marshall, Mhairi and Khanna, Ajay and Durbin, Richard and Eddy, Sean R. and Sonnhammer, Erik L. L. and Bateman, Alex }, citeulike-article-id = {2054424}, doi = {10.1093/nar/gkj149}, journal = {Nucleic Acids Res}, keywords = {alignment, article-predikin, chain, computer, database, graphics, interface, internet, markov, protein, sequence, software, structure, tertiary, user-computer}, month = {Jan}, number = {Database issue}, pages = {D247--D251}, posted-at = {2007-12-04 03:22:12}, priority = {2}, title = {Pfam: clans, web tools and services.}, url = {http://dx.doi.org/10.1093/nar/gkj149}, volume = {34}, year = {2006} }

RIS record

TY - JOUR ID - Finn2006 L3 - citeulike-article-id:2054424 TI - Pfam: clans, web tools and services. JF - Nucleic Acids Res VL - 34 IS - Database issue SP - D247 EP - D251 N2 - Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/). KW - alignment KW - article-predikin KW - chain KW - computer KW - database KW - graphics KW - interface KW - internet KW - markov KW - protein KW - sequence KW - software KW - structure KW - tertiary KW - user-computer AU - Finn, Robert AU - Mistry, Jaina AU - Böckler, Benjamin AU - Jones, Sam AU - Hollich, Volker AU - Lassmann, Timo AU - Moxon, Simon AU - Marshall, Mhairi AU - Khanna, Ajay AU - Durbin, Richard AU - Eddy, Sean AU - Sonnhammer, Erik AU - Bateman, Alex PY - 2006/Jan// UR - http://dx.doi.org/10.1093/nar/gkj149 ER -

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