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nedwards tandem-mass-spectrometry [159 articles]

最近 nedwards さんのライブラリに追加された論文の中から タグ tandem-mass-spectrometry. You can also see everyone's tandem-mass-spectrometry.
  • Tissue-Specific Expression and Post-Translational Modification of Histone H3 Variants
    J. Proteome Res., Vol. 7, No. 10. (3 October 2008), pp. 4225-4236.
    by Benjamin A Garcia, Eric C Thomas, Neil L Kelleher, Craig A Mizzen
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 21:42:06 as ** along with 1 person brianb
  • Web and Database Software for Identification of Intact Proteins Using "Top Down" Mass Spectrometry
    Anal. Chem., Vol. 75, No. 16. (15 August 2003), pp. 4081-4086.
    by GK Taylor, YB Kim, AJ Forbes, F Meng, R Mccarthy, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:33:04 as **
  • Top down mass spectrometry of < 60-kDa proteins from Methanosarcina acetivorans using quadrupole FRMS with automated octopole collisionally activated dissociation.
    Molecular & cellular proteomics : MCP, Vol. 5, No. 1. (January 2006), pp. 14-25.
    by SM Patrie, JT Ferguson, DE Robinson, D Whipple, M Rother, WW Metcalf, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:37 as **
  • ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry.
    Nucleic acids research, Vol. 32, No. Web Server issue. (1 July 2004)
    by RD LeDuc, GK Taylor, YB Kim, TE Januszyk, LH Bynum, JV Sola, JS Garavelli, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:17 as **
  • ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by L Zamdborg, RD LeDuc, KJ Glowacz, YB Kim, V Viswanathan, IT Spaulding, BP Early, EJ Bluhm, S Babai, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:30:07 as **
  • Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data.
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 13 (September 2007)
    by RD Leduc, NL Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:29:55 as **
  • Decoding protein modifications using top-down mass spectrometry
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 817-821.
    by Nertila Siuti, Neil L Kelleher
    posted to top-down tandem-mass-spectrometry proteomics by nedwards on 2008-10-07 18:23:26 as ** along with 1 person jyuh
  • Improving Protein Identification Sensitivity by Combining MS and MS/MS Information for Shotgun Proteomics Using LTQ-Orbitrap High Mass Accuracy Data
    Anal. Chem., Vol. 80, No. 6. (15 March 2008), pp. 2018-2025.
    by B Lu, A Motoyama, C Ruse, J Venable, JR Yates
    posted to tandem-mass-spectrometry proteomics peptide-identification high-accuracy by nedwards on 2008-10-03 17:15:12 as ** along with 1 person brianb
  • Rapid and Accurate Peptide Identification from Tandem Mass Spectra
    J. Proteome Res. (28 May 2008)
    by Christopher Y Park, Aaron A Klammer, Lukas Ka&#x308;ll, Michael J Maccoss, William S Noble
    posted to tandem-mass-spectrometry proteomics peptide-identification-statistics peptide-identification by nedwards on 2008-10-03 17:12:48 as ** along with 1 person brianb
  • A Fast SEQUEST Cross Correlation Algorithm
    J. Proteome Res. (6 September 2008)
    by Jimmy K Eng, Bernd Fischer, Jonas Grossmann, Michael J Maccoss
    posted to tandem-mass-spectrometry sequest proteomics peptide-identification by nedwards on 2008-10-03 17:08:52 as ** along with 1 person brianb
  • Enhancing Peptide Identification Confidence by Combining Search Methods
    J. Proteome Res. (18 June 2008)
    by Gelio Alves, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 17:03:50 as ** along with 1 person brianb
  • DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring
    J. Proteome Res. (17 July 2008)
    by David L Tabb, Ze-Qiang Ma, Daniel B Martin, Amy-Joan L Ham, Matthew C Chambers
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 17:02:05 as ** along with 1 person brianb
  • Cleaning of raw peptide MS/MS spectra: improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise.
    Proteomics, Vol. 6, No. 19. (October 2006), pp. 5117-5131.
    by N Mujezinovic, G Raidl, JR Hutchins, JM Peters, K Mechtler, F Eisenhaber
    posted to tandem-mass-spectrometry spectral-processing proteomics isotope-cluster-modeling by nedwards on 2008-10-03 17:01:14 as ** along with 1 person brianb
  • Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches
    J. Proteome Res. (14 August 2008)
    by Wilfred H Tang, Ignat V Shilov, Sean L Seymour
    posted to tandem-mass-spectrometry proteomics peptide-identification-statistics peptide-identification by nedwards on 2008-10-03 16:58:55 as ** along with 1 person brianb
  • Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra
    Mol Cell Proteomics (14 August 2008), M800103-MCP200.
    by Sangtae Kim, Nitin Gupta, Nuno Bandeira, Pavel A Pevzner
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:56:53 as ** along with 1 person brianb
  • Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
    Mol Cell Proteomics, Vol. 7, No. 5. (1 May 2008), pp. 962-970.
    by Markus Brosch, Sajani Swamy, Tim Hubbard, Jyoti Choudhary
    posted to tandem-mass-spectrometry tandem proteomics peptide-identification-statistics peptide-identification mascot by nedwards on 2008-10-03 16:56:18 as ** along with 2 people olberd brianb
  • Improved Sequence Tag Generation Method for Peptide Identification in Tandem Mass Spectrometry
    J. Proteome Res. (12 September 2008)
    by Xia Cao, Alexey I Nesvizhskii
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:53:45 as ** along with 1 person brianb
  • Multi-spectra peptide sequencing and its applications to multistage mass spectrometry
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i416-423.
    by Nuno Bandeira, Jesper V Olsen, Matthias Mann, Pavel A Pevzner
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:51:47 as **
  • How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?
    Journal of the American Society for Mass Spectrometry (7 August 2008)
    by Jürgen Cox, Nina C C Hubner, Matthias Mann
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-10-03 16:49:44 as ** along with 2 people jyuh brianb
  • Precision proteomics: The case for high resolution and high mass accuracy
    Proceedings of the National Academy of Sciences (2008)
    by Matthias Mann, Neil L Kelleher
    posted to tandem-mass-spectrometry proteomics high-accuracy by nedwards on 2008-10-03 16:43:42 as ** along with 2 people and 1 group jyuh brianb microbiology_nijmegen
  • Open Mass Spectrometry Search Algorithm
    J. Proteome Res., Vol. 3, No. 5. (11 October 2004), pp. 958-964.
    by LY Geer, SP Markey, JA Kowalak, L Wagner, M Xu, DM Maynard, X Yang, W Shi, SH Bryant
    posted to tandem-mass-spectrometry proteomics-software proteomics peptide-identification-statistics peptide-identification omssa by nedwards on 2008-09-29 01:37:41 as **
  • Protein sequence tags: A novel solution for comparative proteomics
    PROTEOMICS, Vol. 5, No. 9. (2005), pp. 2364-2368.
    by Karsten Kuhn, Thorsten Prinz, Jürgen Schäfer, Christian Baumann, Marco Schärfke, Stefan Kienle, Josef Schwarz, Sandra Steiner, Christian Hamon
    posted to tandem-mass-spectrometry proteomics peptide-identification n-terminal-peptides genome-annotation by nedwards on 2008-09-22 22:18:37 as ** along with 1 person brianb
  • Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses
    PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2791-2797.
    by Alexander Scherl, Yihsuan S Tsai, Scott A Shaffer, David R Goodlett
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-08-28 22:10:25 as ** along with 1 person brianb
  • Evaluation of confidence and reproducibility in quantitative proteomics performed by a capillary isoelectric focusing-based proteomic platform coupled with a spectral counting approach
    ELECTROPHORESIS, Vol. 29, No. 14. (2008), pp. 3047-3054.
    by Brian M Balgley, Weijie Wang, Tao Song, Xueping Fang, Li Yang, Cheng S Lee
    posted to protein-quantitation proteomics spectral-counting tandem-mass-spectrometry by nedwards on 2008-08-28 22:08:40 as **
  • Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography&#x2212;Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis
    Anal. Chem., Vol. 80, No. 12. (15 June 2008), pp. 4696-4710.
    by Nan Wang, Liang Li
    posted to dynamic-exclusion proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 21:08:53 as **
  • Recognition of the Carboxy-Terminal Peptide in Cyanogen Bromide Digests of Proteins
    Anal. Chem., Vol. 67, No. 9. (1995), pp. 1644-1645.
    by Constance M Murphy, Catherine Fenselau
    posted to c-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 20:57:51 as **
  • Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
    Nature Biotechnology, Vol. 26, No. 6. (25 May 2008), pp. 685-694.
    by Oliver Schilling, Christopher M Overall
    posted to n-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 20:48:14 as ** along with 1 person brianb
  • Proteases' prime targets revealed
    Nature Biotechnology, Vol. 26, No. 6., pp. 652-653.
    by Scott L Diamond, Doron Greenbaum
    posted to n-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2008-07-03 20:47:24 as **
  • Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein
    Mol Cell Proteomics, Vol. 4, No. 9. (1 September 2005), pp. 1265-1272.
    by Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, Toshitaka Sato, Takeshi Nagasu, Juri Rappsilber, Matthias Mann
    posted to protein-quantitation protein-quantitation-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-06-09 15:04:19 as ** along with 1 person nuin
  • Isoform Analysis of LC&#x2212;MS/MS Data from Multidimensional Fractionation of the Serum Proteome
    J. Proteome Res. (18 April 2008)
    by Alexei L Krasnoselsky, Vitor M Faca, Sharon J Pitteri, Qing Zhang, Samir M Hanash
    posted to protein-isoforms proteomics tandem-mass-spectrometry by nedwards on 2008-04-25 15:58:47 as **
  • Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
    J. Proteome Res. (19 April 2008)
    by Xiuxia Du, Feng Yang, Nathan P Manes, David L Stenoien, Matthew E Monroe, Joshua N Adkins, David J States, Samuel O Purvine, Ii Camp, Richard D Smith
    posted to peptide-identification-statistics phosphopeptide phosphorylation proteomics tandem-mass-spectrometry by nedwards on 2008-04-25 15:56:45 as ** along with 2 people neils brianb
  • RAId DbS: Peptide Identification using Database Searches with Realistic Statistics
    Biology Direct, Vol. 2 (25 October 2007), 25.
    by Gelio Alves, Aleksey Y Ogurtsov, Yi-Kuo Yu
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:39:57 as **
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as ** along with 1 person brianb
  • Online Microwave D-Cleavage LC-ESI-MS/MS of Intact Proteins: Site-Specific Cleavages at Aspartic Acid Residues and Disulfide Bonds
    J. Proteome Res., Vol. 7, No. 3. (7 March 2008), pp. 1012-1026.
    by Nicolas J Hauser, Franco Basile
    posted to acid-cleavage proteomics tandem-mass-spectrometry by nedwards on 2008-03-24 18:44:55 as **
  • Semisupervised model-based validation of Peptide identifications in mass spectrometry-based proteomics.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 254-265.
    by H Choi, AI Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:47:35 as ** along with 1 person jyuh
  • Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies
    J. Proteome Res., Vol. 7, No. 1. (4 January 2008), pp. 245-253.
    by Brian C Searle, Mark Turner, Alexey I Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-combiners proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:43:14 as **
  • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925.
    by Lukas Käll, Jesse D Canterbury, Jason Weston, William S Noble, Michael J Maccoss
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-01-31 20:55:27 as ** along with 1 person tmmurali
  • De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization
    Anal. Chem., Vol. 79, No. 4. (15 February 2007), pp. 1433-1446.
    by PA Dimaggio, CA Floudas
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:02:10 as **
  • Error tolerant searching of uninterpreted tandem mass spectrometry data
    PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1426-1434.
    by David M Creasy, John S Cottrell
    posted to tandem-mass-spectrometry proteomics peptide-identification nopdf mascot by nedwards on 2008-01-03 21:01:12 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by Gelio Alves, Yi-Kuo Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 20:53:55 as **
  • Optimal Construction of Theoretical Spectra for MS/MS Spectra Identification
    OMICS: A Journal of Integrative Biology, Vol. 9, No. 4. (2005), pp. 380-390.
    by Tema Fridman, Vladimir Protopopescu, Greg Hurst, Andrei Borziak, Andrey Gorin
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:42:10 as **
  • Spectral Quality Assessment for High-Throughput Tandem Mass Spectrometry Proteomics
    OMICS: A Journal of Integrative Biology, Vol. 8, No. 3. (2004), pp. 255-265.
    by Samuel Purvine, Natali Kolker, Eugene Kolker
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:39:03 as **
  • Standard Mixtures for Proteome Studies
    OMICS: A Journal of Integrative Biology, Vol. 8, No. 1. (2004), pp. 79-92.
    by Samuel Purvine, Alex F Picone, Eugene Kolker
    posted to proteoimcs proteomics-data tandem-mass-spectrometry by nedwards on 2007-12-31 14:35:26 as **
  • Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry
    Journal of Computational Biology, Vol. 8, No. 6. (2001), pp. 571-583.
    by Ting Chen, Jacob D Jaffe, George M Church
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:29:53 as **
  • HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models
    Journal of Computational Biology, Vol. 14, No. 8. (2007), pp. 1025-1043.
    by Xue Wu, Chau-Wen Tseng, Nathan Edwards
    posted to peptide-identification peptide-identification-statistics proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-12-31 14:21:47 as ** along with 1 person jyuh
  • Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry
    Algorithms in Bioinformatics: Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002. Proceedings (2002), pp. 68-81.
    by Nathan Edwards, Ross Lippert
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-10 16:29:41 as **
  • PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
    Anal. Chem., Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 21:13:46 as **
  • Analysis and validation of proteomic data generated by tandem mass spectrometry
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 787-797.
    by Alexey Nesvizhskii, Olga Vitek, Ruedi Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 16:03:29 as ** along with 2 people jyuh fishtank
  • Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization.
    Nat Protoc, Vol. 1, No. 4. (2006), pp. 1790-1798.
    by L McDonald, RJ Beynon
    posted to genome-annotation n-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2007-10-30 15:17:02 as **
  • A proteomics approach to understanding protein ubiquitination
    Nat Biotech, Vol. 21, No. 8. (2003), pp. 921-926.
    by Junmin Peng, Daniel Schwartz, Joshua E Elias, Carson C Thoreen, Dongmei Cheng, Gerald Marsischky, Jeroen Roelofs, Daniel Finley, Steven P Gygi
    posted to proteomics tandem-mass-spectrometry ubiquitination by nedwards on 2007-10-18 19:39:29 as ** along with 2 people fishtank Garth_9145
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/nedwards/tag/tandem-mass-spectrometry

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