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msuarezdiez library [38 articles]

最近 msuarezdiez さんのライブラリ .
  • De novo protein design using pairwise potentials and a genetic algorithm
    Protein Sci, Vol. 3, No. 4. (1 April 1994), pp. 567-574.
    by DT Jones
    posted to computational_protein_design bioinformatics by msuarezdiez on 2008-04-29 10:23:05 as **
  • The rational design of allosteric interactions in a monomeric protein and its applications to the construction of biosensors.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 9. (29 April 1997), pp. 4366-4371.
    by JS Marvin, EE Corcoran, NA Hattangadi, JV Zhang, SA Gere, HW Hellinga
    posted to computational_protein_design biosensor by msuarezdiez on 2008-04-25 10:19:53 as **
  • Recent advances in the bioremediation of persistent organic pollutants via biomolecular engineering
    Enzyme and Microbial Technology, Vol. 37, No. 5. (3 October 2005), pp. 487-496.
    by Ee L Ang, Huimin Zhao, Jeffrey P Obbard
    posted to enzyme_design bioremediation by msuarezdiez on 2008-04-25 10:05:23 as **
  • Protein structure prediction by global optimization of a potential energy function
    Proceedings of the National Academy of Sciences, Vol. 96, No. 10. (11 May 1999), pp. 5482-5485.
    by Adam Liwo, Jooyoung Lee, Daniel R Ripoll, Jaroslaw Pillardy, Harold A Scheraga
    posted to computational_protein_design by msuarezdiez on 2008-04-24 17:38:09 as ***
  • Optimal Sequence Selection in Proteins of Known Structure by Simulated Evolution
    Proceedings of the National Academy of Sciences, Vol. 91, No. 13. (21 June 1994), pp. 5803-5807.
    by HW Hellinga, FM Richards
    posted to computational_protein_design by msuarezdiez on 2008-04-22 12:49:03 as read
  • Enhancing catalytic promiscuity for biocatalysis.
    Curr Opin Chem Biol, Vol. 9, No. 2. (April 2005), pp. 195-201.
    by RJ Kazlauskas
    posted to enzyme_design opinion by msuarezdiez on 2008-04-22 11:59:01 as ** along with 1 person robert
  • Automatic sequence design of MHC Class-I binding peptides impairing CD8+ T cell recognition
    J. Biol. Chem. (30 October 2002), M206853200.
    by Koji Ogata, Alfonso Jaramillo, William Cohen, Jean-Paul Briand, Francine Connan, Jeannine Choppin, Sylviane Muller, Shoshana J Wodak
    posted to computational_protein_design enzyme_design by msuarezdiez on 2008-04-22 11:51:18 as read
  • Engineered antibody Fc variants with enhanced effector function.
    Proc Natl Acad Sci U S A, Vol. 103, No. 11. (14 March 2006), pp. 4005-4010.
    by GA Lazar, W Dang, S Karki, O Vafa, JS Peng, L Hyun, C Chan, HS Chung, A Eivazi, SC Yoder, J Vielmetter, DF Carmichael, RJ Hayes, BI Dahiyat
    posted to computational_protein_design enzyme_design by msuarezdiez on 2008-04-22 11:44:41 as *** along with 1 person bilab
  • De Novo Computational Design of Retro-Aldol Enzymes
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391.
    by Lin Jiang, Eric A Althoff, Fernando R Clemente, Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L Gallaher, Jamie L Betker, Fujie Tanaka, Carlos F Barbas, Donald Hilvert, Kendall N Houk, Barry L Stoddard, David Baker
    posted to computational_protein_design enzyme_design by msuarezdiez on 2008-04-22 11:41:11 as ***** along with 9 people and 2 groups barry aalibes jwm aprasad dgront zwang sobolevnrm davidlott scienbox structural_bioinformatics baker-group
  • Kemp elimination catalysts by computational enzyme design
    Nature (19 March 2008)
    by Daniela Röthlisberger, Olga Khersonsky, Andrew M Wollacott, Lin Jiang, Jason Dechancie, Jamie Betker, Jasmine L Gallaher, Eric A Althoff, Alexandre Zanghellini, Orly Dym, Shira Albeck, Kendall N Houk, Dan S Tawfik, David Baker
    posted to computational desig protein by msuarezdiez on 2008-04-22 11:27:04 as ***** along with 3 people neils cactus jwm
  • Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
    Genome Biology, Vol. 8 (21 February 2007), R22.
    by Carleton L Kingsford, Kunmi Ayanbule, Steven L Salzberg
    posted to transcriptional-terminators by msuarezdiez on 2008-04-04 16:15:22 as read along with 1 person treangen
  • Enzyme promiscuity: mechanism and applications
    Trends in Biotechnology, Vol. In Press, Corrected Proof
    by Karl Hult, Per Berglund
    posted to enzyme promiscuity by msuarezdiez on 2008-03-31 15:31:20 as ** along with 1 person tny
  • Directed evolution of a (beta alpha)8-barrel enzyme to catalyze related reactions in two different metabolic pathways.
    Proc Natl Acad Sci U S A, Vol. 97, No. 18. (29 August 2000), pp. 9925-9930.
    by C Jürgens, A Strom, D Wegener, S Hettwer, M Wilmanns, R Sterner
    posted to enzyme evolvability promiscuity by msuarezdiez on 2008-03-31 14:53:38 as **
  • Engineering a multipurpose catalyst.
    Nat Chem Biol, Vol. 2, No. 10. (October 2006), pp. 514-515.
    by RJ Kazlauskas
    posted to enzyme multipurpose promiscuity by msuarezdiez on 2008-03-31 14:11:18 as **
  • New formulae for folding catalysts make them multi-purpose enzymes
    Biotechnology and Bioengineering, Vol. 56, No. 6. (1997), pp. 645-649.
    by Mireille Moutiez, Régine Guthapfel, Paul Gueguen, Eric Quéméneur
    posted to ezyme promiscuity by msuarezdiez on 2008-03-31 14:05:48 as **
  • De novo design of catalytic proteins.
    Proc Natl Acad Sci U S A, Vol. 101, No. 32. (10 August 2004), pp. 11566-11570.
    by J Kaplan, WF DeGrado
    posted to design enzyme protein by msuarezdiez on 2008-03-31 13:45:51 as **** along with 1 person dgront
  • Creation of a Broad-Range and Highly Stereoselective D-Amino Acid Dehydrogenase for the One-Step Synthesis of D-Amino Acids
    J. Am. Chem. Soc., Vol. 128, No. 33. (23 August 2006), pp. 10923-10929.
    by K Vedha-Peters, M Gunawardana, JD Rozzell, SJ Novick
    posted to d-aminoacids enantiomers enzyme promiscuity by msuarezdiez on 2008-03-31 13:37:13 as **
  • Computational Protein Design: A Novel Path to Future Protein Drugs
    pp. 3973-3997.
    by M Rosenberg
    posted to computational desing protein by msuarezdiez on 2008-03-27 12:24:26 as **
  • Advances in computational protein design
    Current Opinion in Structural Biology, Vol. 14, No. 4. (August 2004), pp. 487-494.
    by Sheldon Park, Xi Yang, Jeffery G Saven
    posted to no-tag by msuarezdiez on 2008-03-27 12:23:05 as ** along with 1 person and 1 group allPowerde The_Festival_of_Doubt
  • Review: Protein Design--Where We Were, Where We Are, Where We're Going
    Journal of Structural Biology, Vol. 134, No. 2-3. (May 2001), pp. 269-281.
    by Navin Pokala, Tracy M Handel
    posted to computational design protein review by msuarezdiez on 2008-03-27 12:19:10 as ** along with 1 person medic0747
  • Modeling mutations in protein structures
    Protein Sci, Vol. 16, No. 9. (1 September 2007), pp. 2030-2041.
    by Eric Feyfant, Andrej Sali, Andras Fiser
    posted to biology computationalprotein design structural by msuarezdiez on 2008-03-27 11:23:18 as read along with 1 person massivemayhem
  • Energy functions for protein design
    Current Opinion in Structural Biology, Vol. 9, No. 4. (August 1999), pp. 509-513.
    by Benjamin D Gordon, Shannon A Marshall, Stephen L Mayot
    posted to no-tag by msuarezdiez on 2008-03-26 16:23:03 as ****
  • Coupling backbone flexibility and amino acid sequence selection in protein design.
    Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1701-1707.
    by A Su, SL Mayo
    posted to bioinformatics computational design protein structural by msuarezdiez on 2008-03-26 15:49:46 as ****
  • Progress in computational protein design.
    Curr Opin Biotechnol (17 July 2007)
    by Shaun M M Lippow, Bruce Tidor
    posted to computational design protein by msuarezdiez on 2008-03-26 15:24:47 as read along with 1 person and 1 group BragilMassoud Bioinformatics
  • A novel method for accurate operon predictions in all sequenced prokaryotes
    Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. 880-892.
    by Morgan N Price, Katherine H Huang, Eric J Alm, Adam P Arkin
    posted to operon prediction by msuarezdiez on 2008-03-24 12:03:41 as read along with 1 person bluto
  • A multi-approaches-guided genetic algorithm with application to operon prediction
    Artificial Intelligence in Medicine, Vol. 41, No. 2. (October 2007), pp. 151-159.
    by Shuqin Wang, Yan Wang, Wei Du, Fangxun Sun, Xiumei Wang, Chunguang Zhou, Yanchun Liang
    posted to operon prediction by msuarezdiez on 2008-03-24 12:02:08 as read
  • Operon prediction for sequenced bacterial genomes without experimental information.
    Appl Environ Microbiol, Vol. 73, No. 3. (February 2007), pp. 846-854.
    by NH Bergman, KD Passalacqua, PC Hanna, ZS Qin
    posted to operon prediction by msuarezdiez on 2008-03-24 11:59:20 as **
  • Predicted transcription factor binding sites as predictors of operons in Escherichia coli and Streptomyces coelicolor.
    BMC Genomics, Vol. 9 (12 February 2008), 79.
    by Emma Laing, Khushwant Sidhu, Simon J Hubbard
    posted to no-tag by msuarezdiez on 2008-03-24 11:57:49 as ** along with 1 person sdyxz
  • Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome.
    Nucleic Acids Res, Vol. 32, No. 7. (2004), pp. 2147-2157.
    by X Chen, Z Su, P Dam, B Palenik, Y Xu, T Jiang
    posted to operon prediction by msuarezdiez on 2008-03-24 11:55:37 as ** along with 2 people ziquje kaarsinogen
  • Operons in Escherichia coli: Genomic analyses and predictions
    Proceedings of the National Academy of Sciences, Vol. 97, No. 12. (June 2000), pp. 6652-6657.
    by Heladia Salgado, Gabriel Moreno-Hagelsieb, Temple F Smith, Julio Collado-Vides
    posted to operon predcition by msuarezdiez on 2008-03-24 11:53:46 as read
  • Recent advances in computational promoter analysis in understanding the transcriptional regulatory network
    Biochemical and Biophysical Research Communications, Vol. 309, No. 3. (26 September 2003), pp. 495-501.
    by Ping Qiu
    posted to computational promoter by msuarezdiez on 2008-03-19 14:44:42 as ** along with 1 person maralena
  • Detailed analysis of grid-based molecular docking: A case study of CDOCKER - A CHARMm-based MD docking algorithm
    Journal of Computational Chemistry, Vol. 24, No. 13. (2003), pp. 1549-1562.
    by Guosheng Wu, Daniel H Robertson, Charles L Brooks, Michal Vieth
    posted to charmm dynamics molecular by msuarezdiez on 2008-01-16 12:47:10 as ** along with 3 people apostola papatonyhill mmuecke
  • Monte Carlo simulations of biomolecules: The MC module in CHARMM.
    J Comput Chem, Vol. 27, No. 2. (30 January 2006), pp. 203-216.
    by J Hu, A Ma, AR Dinner
    posted to charmm dynamics molecular monte-carlo by msuarezdiez on 2008-01-16 12:44:28 as **
  • Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations
    Journal of Computational Chemistry, Vol. 28, No. 9. (2007), pp. 1485-1502.
    by Lee H Woodcock, Milan Hodo?ček, Andrew TB Gilbert, Peter MW Gill, Henry F Schaefer, Bernard R Brooks
    posted to charmm dynamics molecular by msuarezdiez on 2008-01-16 12:42:51 as **
  • Studying Protein Folding on the Grid: Experiences using CHARMM on NPACI Resources under Legion
    (2001)
    by A Natrajan, M Crowley, Wilkins N Diehr, M Humphrey, A Fox, A Grimshaw
    posted to no-tag by msuarezdiez on 2008-01-16 12:38:56 as *
  • Computational sidechain placement and protein mutagenesis with implicit solvent models.
    Proteins, Vol. 67, No. 4. (1 June 2007), pp. 853-867.
    by A Lopes, A Alexandrov, C Bathelt, G Archontis, T Simonson
    posted to design dynamics implicit molecular protein solvent by msuarezdiez on 2008-01-15 14:52:29 as **
  • Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution
    Biology Direct, Vol. 2 (28 June 2007), 17.
    by Jesse D Bloom, Philip A Romero, Zhongyi Lu, Frances H Arnold
    posted to evolvability ezyme promiscuity protein by msuarezdiez on 2008-01-15 11:11:05 as *** along with 2 people rabu msierk
  • Distinct Roles for Arp2/3 Regulators in Actin Assembly and Endocytosis
    PLoS Biology, Vol. 6, No. 1. (1 January 2008), e1.
    by Brian J Galletta, Dennis Y Chuang, John A Cooper
    posted to prueba by msuarezdiez on 2008-01-14 14:33:46 as **
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