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mmuecke molecular_dynamics [13 articles]

最近 mmuecke さんのライブラリに追加された論文の中から タグ molecular_dynamics. You can also see everyone's molecular_dynamics.
  • Anton, a special-purpose machine for molecular dynamics simulation
    Commun. ACM, Vol. 51, No. 7. (July 2008), pp. 91-97.
    by David E Shaw, Martin M Deneroff, Ron O Dror, Jeffrey S Kuskin, Richard H Larson, John K Salmon, Cliff Young, Brannon Batson, Kevin J Bowers, Jack C Chao, Michael P Eastwood, Joseph Gagliardo, JP Grossman, Richard C Ho, Douglas J Lerardi, István Kolossváry, John L Klepeis, Timothy Layman, Christine Mcleavey, Mark A Moraes, Rolf Mueller, Edward C Priest, Yibing Shan, Jochen Spengler, Michael Theobald, Brian Towles, Stanley C Wang
    posted to vlsi_design reconfigurable_platforms molecular_dynamics by mmuecke on 2008-07-01 13:31:27 as ***** along with 1 person apaydin
  • A Survey of FPGAs for Acceleration of High Performance Computing and their Application to Computational Molecular Biology
    TENCON 2005 2005 IEEE Region 10 (2005), pp. 1-6.
    by T Ramdas, G Egan
    posted to trends survey reconfigurable_computing molecular_dynamics molecular_docking genomesequencing fpgasupercomputing bioinformatics by mmuecke on 2008-07-01 08:14:09 as ** along with 1 person and 1 group nevarcds Reconfigurable Computing
  • GRAPE-DR: 2-Pflops massively-parallel computer with 512-core, 512-Gflops processor chips for scientific computing
    (2007), pp. 1-11.
    by Junichiro Makino, Kei Hiraki, Mary Inaba
    posted to molecular_dynamics high-performance_computing computer_architecture by mmuecke on 2008-06-10 10:33:12 as **
  • Using FPGA Devices to Accelerate Biomolecular Simulations
    Computer, Vol. 40, No. 3. (2007), pp. 66-73.
    by Sadaf R Alam, Pratul K Agarwal, Melissa C Smith, Jeffrey S Vetter, David Caliga
    posted to molecular_dynamics high-performance_computing fpgasupercomputing by mmuecke on 2008-05-27 10:39:39 as ** along with 4 people adilson_mohr hamish peskin smithmc
  • Accelerating Molecular Dynamics Simulations with Reconfigurable Computers
    Parallel and Distributed Systems, IEEE Transactions on, Vol. 19, No. 6. (2008), pp. 764-778.
    by Ronald Scrofano, Maya B Gokhale, Frans Trouw, Viktor K Prasanna
    posted to reconfigurable_computing molecular_dynamics high-performance_computing fpgasupercomputing by mmuecke on 2008-05-08 13:57:15 as ** along with 1 person adilson_mohr
  • Probing the Applicability of Polarizable Force-Field Molecular Dynamics for Parallel Architectures: A Comparison of Digital MPI with LAM-MPI and MPICH2
    Recent Advances in Parallel Virtual Machine and Message Passing Interface (2005), pp. 433-440.
    by Benjamin Almeida, Reema Mahajan, Dieter Kranzlmüller, Jens Volkert, Siegfried Höfinger
    posted to case_study high-performance_computing molecular_dynamics mpi parallel_algorithms performance_analysis by mmuecke on 2008-03-14 08:14:18 as **
  • GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
    J. Chem. Theory Comput. (2 February 2008)
    by B Hess, C Kutzner, D Vanderspoel, E Lindahl
    posted to high-performance_computing molecular_dynamics parallel_algorithms by mmuecke on 2008-02-20 16:18:30 as read along with 6 people and 1 group loison daevans sobolevnrm r2s2 middledomain OndrejMarsalek baker-group
  • Detailed analysis of grid-based molecular docking: A case study of CDOCKER - A CHARMm-based MD docking algorithm
    Journal of Computational Chemistry, Vol. 24, No. 13. (2003), pp. 1549-1562.
    by Guosheng Wu, Daniel H Robertson, Charles L Brooks, Michal Vieth
    posted to case_study charmm molecular_docking molecular_dynamics by mmuecke on 2008-01-21 14:31:48 as ** along with 3 people apostola papatonyhill msuarezdiez
  • CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
    Journal of Computational Chemistry, Vol. 4, No. 2. (1983), pp. 187-217.
    by Bernard R Brooks, Robert E Bruccoleri, Barry D Olafson, David J States, S Swaminathan, Martin Karplus
    posted to charmm molecular_dynamics by mmuecke on 2008-01-21 14:29:47 as ** along with 3 people dgront rabio saravan
  • Grid computing and biomolecular simulation
    Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 363, No. 1833. (2005), pp. 2017-2035.
    by Christopher J Woods, Muan H Ng, Steven Johnston, Stuart E Murdock, Bing Wu, Kaihsu Tai, Hans Fangohr, Paul Jeffreys, Simon Cox, Jeremy G Frey, Mark S Sansom, Jonathan W Essex
    posted to bioinformatics high-performance_computing molecular_docking molecular_dynamics by mmuecke on 2008-01-21 12:27:45 as read
  • On the performance of molecular dynamics applications on current high-end systems.
    Philos Transact A Math Phys Eng Sci, Vol. 363, No. 1833. (15 August 2005), pp. 1987-1998.
    by J Hein, F Reid, L Smith, I Bush, M Guest, P Sherwood
    posted to charmm high-performance_computing molecular_dynamics survey by mmuecke on 2008-01-21 12:24:25 as read along with 1 person hlwoodcock
  • A Reconfigurable Load Balancing Architecture for Molecular Dynamics
    Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International (2007), pp. 1-6.
    by J Phillips, M Areno, C Rogers, A Dasu, B Eames
    posted to fpga molecular_dynamics by mmuecke on 2007-11-27 00:19:28 as **
  • Adventures in Improving the Scaling and Accuracy of a Parallel Molecular Dynamics Program
    J. Supercomput., Vol. 11, No. 3. (1997), pp. 255-278.
    by Michael Crowley, Tom Darden, Thomas Cheatham, David Deerfield
    posted to fft high-performance_computing molecular_dynamics by mmuecke on 2007-10-10 12:55:41 as read
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/mmuecke/tag/molecular_dynamics

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