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mimulus_99 no-tag [31 articles]

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  • Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
    Genetics (3 February 2008), genetics.107.082032.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to no-tag by mimulus_99 on 2008-05-01 19:53:26 as read along with 5 people and 3 groups caseybrown dpollard brant djkt stajich RockmanLab cis-regulatory-evolution EisenLab
  • The evolutionary significance of cis-regulatory mutations
    Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216.
    by Gregory A Wray
    posted to no-tag by mimulus_99 on 2008-02-01 20:53:37 as *** along with 6 people and 4 groups emptyhb brant dpollard dchughes lusk cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
    Mol Biol Cell, Vol. 9, No. 12. (December 1998), pp. 3273-3297.
    by PT Spellman, G Sherlock, MQ Zhang, VR Iyer, K Anders, MB Eisen, PO Brown, D Botstein, B Futcher
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  • Both naturally occurring insertions of transposable elements and intermediate frequency polymorphisms at the achaete-scute complex are associated with variation in bristle number in Drosophila melanogaster.
    Genetics, Vol. 154, No. 3. (March 2000), pp. 1255-1269.
    by AD Long, RF Lyman, AH Morgan, CH Langley, TF Mackay
    posted to no-tag by mimulus_99 on 2007-12-07 02:51:28 as read
  • Evolution at two levels: on genes and form.
    PLoS Biol, Vol. 3, No. 7. (July 2005)
    by SB Carroll
    posted to no-tag by mimulus_99 on 2007-12-07 02:36:54 as *** along with 4 people and 1 group dayjm bayesian echinotrix livingthingdan livingthing
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    posted to no-tag by mimulus_99 on 2007-12-07 02:26:11 as read along with 22 people and 2 groups jasonflannick ep161302 jyuh cmmorel dpollard ilh djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz julianjonker gjuggler drbal maralena EisenLab SorgerLab
  • The achaete-scute complex as an integrating device.
    Int J Dev Biol, Vol. 42, No. 3. (1998), pp. 275-282.
    by J Modolell, S Campuzano
    posted to no-tag by mimulus_99 on 2007-12-07 02:05:44 as read
  • Sources of human psychological differences: the Minnesota Study of Twins Reared Apart.
    Science, Vol. 250, No. 4978. (12 October 1990), pp. 223-228.
    by TJ Bouchard, DT Lykken, M McGue, NL Segal, A Tellegen
    posted to no-tag by mimulus_99 on 2007-12-07 01:55:40 as read
  • The sequence of the human genome.
    Science, Vol. 291, No. 5507. (16 February 2001), pp. 1304-1351.
    by JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, M Yandell, CA Evans, RA Holt, JD Gocayne, P Amanatides, RM Ballew, DH Huson, JR Wortman, Q Zhang, CD Kodira, XH Zheng, L Chen, M Skupski, G Subramanian, PD Thomas, J Zhang, GL Gabor Miklos, C Nelson, S Broder, AG Clark, J Nadeau, VA McKusick, N Zinder, AJ Levine, RJ Roberts, M Simon, C Slayman, M Hunkapiller, R Bolanos, A Delcher, I Dew, D Fasulo, M Flanigan, L Florea, A Halpern, S Hannenhalli, S Kravitz, S Levy, C Mobarry, K Reinert, K Remington, J Abu-Threideh, E Beasley, K Biddick, V Bonazzi, R Brandon, M Cargill, I Chandramouliswaran, R Charlab, K Chaturvedi, Z Deng, V Di Francesco, P Dunn, K Eilbeck, C Evangelista, AE Gabrielian, W Gan, W Ge, F Gong, Z Gu, P Guan, TJ Heiman, ME Higgins, RR Ji, Z Ke, KA Ketchum, Z Lai, Y Lei, Z Li, J Li, Y Liang, X Lin, F Lu, GV Merkulov, N Milshina, HM Moore, AK Naik, VA Narayan, B Neelam, D Nusskern, DB Rusch, S Salzberg, W Shao, B Shue, J Sun, Z Wang, A Wang, X Wang, J Wang, M Wei, R Wides, C Xiao, C Yan, A Yao, J Ye, M Zhan, W Zhang, H Zhang, Q Zhao, L Zheng, F Zhong, W Zhong, S Zhu, S Zhao, D Gilbert, S Baumhueter, G Spier, C Carter, A Cravchik, T Woodage, F Ali, H An, A Awe, D Baldwin, H Baden, M Barnstead, I Barrow, K Beeson, D Busam, A Carver, A Center, ML Cheng, L Curry, S Danaher, L Davenport, R Desilets, S Dietz, K Dodson, L Doup, S Ferriera, N Garg, A Gluecksmann, B Hart, J Haynes, C Haynes, C Heiner, S Hladun, D Hostin, J Houck, T Howland, C Ibegwam, J Johnson, F Kalush, L Kline, S Koduru, A Love, F Mann, D May, S McCawley, T McIntosh, I McMullen, M Moy, L Moy, B Murphy, K Nelson, C Pfannkoch, E Pratts, V Puri, H Qureshi, M Reardon, R Rodriguez, YH Rogers, D Romblad, B Ruhfel, R Scott, C Sitter, M Smallwood, E Stewart, R Strong, E Suh, R Thomas, NN Tint, S Tse, C Vech, G Wang, J Wetter, S Williams, M Williams, S Windsor, E Winn-Deen, K Wolfe, J Zaveri, K Zaveri, JF Abril, R Guigó, MJ Campbell, KV Sjolander, B Karlak, A Kejariwal, H Mi, B Lazareva, T Hatton, A Narechania, K Diemer, A Muruganujan, N Guo, S Sato, V Bafna, S Istrail, R Lippert, R Schwartz, B Walenz, S Yooseph, D Allen, A Basu, J Baxendale, L Blick, M Caminha, J Carnes-Stine, P Caulk, YH Chiang, M Coyne, C Dahlke, A Mays, M Dombroski, M Donnelly, D Ely, S Esparham, C Fosler, H Gire, S Glanowski, K Glasser, A Glodek, M Gorokhov, K Graham, B Gropman, M Harris, J Heil, S Henderson, J Hoover, D Jennings, C Jordan, J Jordan, J Kasha, L Kagan, C Kraft, A Levitsky, M Lewis, X Liu, J Lopez, D Ma, W Majoros, J McDaniel, S Murphy, M Newman, T Nguyen, N Nguyen, M Nodell, S Pan, J Peck, M Peterson, W Rowe, R Sanders, J Scott, M Simpson, T Smith, A Sprague, T Stockwell, R Turner, E Venter, M Wang, M Wen, D Wu, M Wu, A Xia, A Zandieh, X Zhu
    posted to no-tag by mimulus_99 on 2007-12-07 01:53:44 as read along with 20 people and 3 groups sunliu granujilla Neeperando CitoJam renatomilani frohike brant Cortel jwortman jnemecek bicko Dax42 yas balajis xdeupi arcticrasta dgront olympos incovoma naegele Proteinkinases T_lab LabCompMed
  • The Genome Sequence of Drosophila melanogaster
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by Mark D Adams, Susan E Celniker, Robert A Holt, Cheryl A Evans, Jeannine D Gocayne, Peter G Amanatides, Steven E Scherer, Peter W Li, Roger A Hoskins, Richard F Galle, Reed A George, Suzanna E Lewis, Stephen Richards, Michael Ashburner, Scott N Henderson, Granger G Sutton, Jennifer R Wortman, Mark D Yandell, Qing Zhang, Lin X Chen, Rhonda C Brandon, Yu-Hui C Rogers, Robert G Blazej, Mark Champe, Barret D Pfeiffer, Kenneth H Wan, Clare Doyle, Evan G Baxter, Gregg Helt, Catherine R Nelson, GL Gabor, Josep F Abril, Anna Agbayani, Hui-Jin An, Cynthia Andrews-Pfannkoch, Danita Baldwin, Richard M Ballew, Anand Basu, James Baxendale, Leyla Bayraktaroglu, Ellen M Beasley, Karen Y Beeson, P Benos, Benjamin P Berman, Deepali Bhandari, Slava Bolshakov, Dana Borkova, Michael R Botchan, John Bouck, Peter Brokstein, Phillipe Brottier, Kenneth C Burtis, Dana A Busam, Heather Butler, Edouard Cadieu, Angela Center, Ishwar Chandra, Michael M Cherry, Simon Cawley, Carl Dahlke, Lionel B Davenport, Peter Davies, Beatriz d Pablos, Arthur Delcher, Zuoming Deng, Anne D Mays, Ian Dew, Suzanne M Dietz, Kristina Dodson, Lisa E Doup, Michael Downes, Shannon Dugan-Rocha, Boris C Dunkov, Patrick Dunn, Kenneth J Durbin, Carlos C Evangelista, Concepcion Ferraz, Steven Ferriera, Wolfgang Fleischmann, Carl Fosler, Andrei E Gabrielian, Neha S Garg, William M Gelbart, Ken Glasser, Anna Glodek, Fangcheng Gong, Harley H Gorrell, Zhiping Gu, Ping Guan, Michael Harris, Nomi L Harris, Damon Harvey, Thomas J Heiman, Judith R Hernandez, Jarrett Houck, Damon Hostin, Kathryn A Houston, Timothy J Howland, Ming-Hui Wei, Chinyere Ibegwam, Mena Jalali, Francis Kalush, Gary H Karpen, Zhaoxi Ke, James A Kennison, Karen A Ketchum, Bruce E Kimmel, Chinnappa D Kodira, Cheryl Kraft, Saul Kravitz, David Kulp, Zhongwu Lai, Paul Lasko, Yiding Lei, Alexander A Levitsky, Jiayin Li, Zhenya Li, Yong Liang, Xiaoying Lin, Xiangjun Liu, Bettina Mattei, Tina C Mcintosh, Michael P Mcleod, Duncan Mcpherson, Gennady Merkulov, Natalia V Milshina, Clark Mobarry, Joe Morris, Ali Moshrefi, Stephen M Mount, Mee Moy, Brian Murphy, Lee Murphy, Donna M Muzny, David L Nelson, David R Nelson, Keith A Nelson, Katherine Nixon, Deborah R Nusskern, Joanne M Pacleb, Michael Palazzolo, Gjange S Pittman, Sue Pan, John Pollard, Vinita Puri, Martin G Reese, Knut Reinert, Karin Remington, Robert D Saunders, Frederick Scheeler, Hua Shen, Bixiang C Shue, Inga Sidén-Kiamos, Michael Simpson, Marian P Skupski, Tom Smith, Eugene Spier, Allan C Spradling, Mark Stapleton, Renee Strong, Eric Sun, Robert Svirskas, Cyndee Tector, Russell Turner, Eli Venter, Aihui H Wang, Xin Wang, Zhen-Yuan Wang, David A Wassarman, George M Weinstock, Jean Weissenbach, Sherita M Williams, Trevor Woodage, Kim C Worley, David Wu, Song Yang, Alison A Yao, Jane Ye, Ru-Fang Yeh, Jayshree S Zaveri, Ming Zhan, Guangren Zhang, Qi Zhao, Liansheng Zheng, Xiangqun H Zheng, Fei N Zhong, Wenyan Zhong, Xiaojun Zhou, Shiaoping Zhu, Xiaohong Zhu, Hamilton O Smith, Richard A Gibbs, Eugene W Myers, Gerald M Rubin, Craig C Venter
    posted to no-tag by mimulus_99 on 2007-12-07 01:32:09 as read along with 8 people hsekiguc brant dragonrez RMGraze Chue treangen bluto antonkratz
  • The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.
    Genome Biol, Vol. 3, No. 12. (2002)
    by JS Kaminker, CM Bergman, B Kronmiller, J Carlson, R Svirskas, S Patel, E Frise, DA Wheeler, SE Lewis, GM Rubin, M Ashburner, SE Celniker
    posted to no-tag by mimulus_99 on 2007-12-04 00:50:41 as read along with 1 person briann
  • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans.
    Proc Natl Acad Sci U S A, Vol. 100, No. 1. (7 January 2003), pp. 189-192.
    by BP Lewis, RE Green, SE Brenner
    posted to no-tag by mimulus_99 on 2007-12-04 00:45:40 as ** along with 2 people Cortel balicea
  • Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing.
    Proc Natl Acad Sci U S A, Vol. 102, No. 36. (6 September 2005), pp. 12813-12818.
    by D Baek, P Green
    posted to no-tag by mimulus_99 on 2007-12-04 00:43:20 as **
  • Mechanisms of alternative pre-messenger RNA splicing.
    Annu Rev Biochem, Vol. 72 (2003), pp. 291-336.
    by DL Black
    posted to no-tag by mimulus_99 on 2007-11-30 02:03:48 as ** along with 3 people and 1 group Cortel maryee xico WetBiology
  • Toward a neutral evolutionary model of gene expression.
    Genetics, Vol. 170, No. 2. (June 2005), pp. 929-939.
    by P Khaitovich, S Pääbo, G Weiss
    posted to no-tag by mimulus_99 on 2007-11-30 01:58:19 as **
  • Sex-specific expression of alternative transcripts in Drosophila
    Genome Biology, Vol. 7 (25 August 2006), R79.
    by Lauren M Mcintyre, Lisa M Bono, Anne Genissel, Rick Westerman, Damion Junk, Marina Telonis-Scott, Larry Harshman, Marta L Wayne, Artyom Kopp, Sergey V Nuzhdin
    posted to no-tag by mimulus_99 on 2007-11-23 20:56:59 as ***
  • Simpler mode of inheritance of transcriptional variation in male Drosophila melanogaster.
    Proc Natl Acad Sci U S A (14 November 2007)
    by Marta L L Wayne, Marina Telonis-Scott, Lisa M M Bono, Larry Harshman, Artyom Kopp, Sergey V V Nuzhdin, Lauren M M McIntyre
    posted to no-tag by mimulus_99 on 2007-11-23 20:06:46 as **
  • The locus of evolution: Evo-Devo and the genetics of adaptation
    Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.
    by Hopi E Hoekstra, Jerry A Coyne
    posted to no-tag by mimulus_99 on 2007-11-14 17:51:16 as read along with 11 people and 2 groups rvosa bpcusack kndiaye mjoach stevanspringer mcphee dpollard balicea TaqSys epigenetics jayster4 EisenLab FAB-lab
  • Evolutionary changes in cis and trans gene regulation
    Nature, Vol. 430, No. 6995. (1 July 2004), pp. 85-88.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to no-tag by mimulus_99 on 2007-11-08 00:26:44 as read along with 8 people and 2 groups lyongu dpollard balicea tabu adepace emmahe emarker cisevol EisenLab cis-regulatory-evolution
  • Primer3 on the WWW for general users and for biologist programmers.
    Methods Mol Biol, Vol. 132 (2000), pp. 365-386.
    by S Rozen, H Skaletsky
    posted to no-tag by mimulus_99 on 2007-10-09 20:49:17 as ** along with 4 people kcrawlik aalibes usagi-kirin bakakaj
  • Population genomics of human gene expression.
    Nat Genet (16 September 2007)
    by Barbara E E Stranger, Alexandra C C Nica, Matthew S S Forrest, Antigone Dimas, Christine P P Bird, Claude Beazley, Catherine E E Ingle, Mark Dunning, Paul Flicek, Daphne Koller, Stephen Montgomery, Simon Tavaré, Panos Deloukas, Emmanouil T T Dermitzakis
    posted to no-tag by mimulus_99 on 2007-10-08 23:09:56 as ** along with 8 people and 1 group jyuh kentsis rdiaz lp2 jo_davies cisevol annacarina07 dmc cis-regulatory-evolution
  • Genome scan for cis-regulatory DNA motifs associated with social behavior in honey bees.
    Proc Natl Acad Sci U S A (25 October 2006)
    by Saurabh Sinha, Xu Ling, Charles W W Whitfield, Chengxiang Zhai, Gene E E Robinson
    posted to no-tag by mimulus_99 on 2007-10-05 18:42:06 as ** along with 1 person and 1 group brant EisenLab
  • The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
    Nature Genetics, Vol. 37, No. 5. (24 April 2005), pp. 544-548.
    by Dee R Denver, Krystalynne Morris, Todd T Streelman, Stuart K Kim, Michael Lynch, Kelley K Thomas
    posted to no-tag by mimulus_99 on 2007-10-05 02:49:51 as ** along with 2 people emptyhb rklancer
  • A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression
    Nature, Vol. 438, No. 7065., pp. 220-223.
    by Scott A Rifkin, David Houle, Junhyong Kim, Kevin P White
    posted to no-tag by mimulus_99 on 2007-10-05 02:49:36 as ** along with 8 people and 1 group emptyhb dayjm indigoviolet dpollard adepace johncumbers djkt caseybrown EisenLab
  • Allele-specific assay reveals functional variation in the chalcone synthase promoter of Arabidopsis thaliana that is compatible with neutral evolution.
    Plant Cell, Vol. 17, No. 3. (March 2005), pp. 676-690.
    by J de Meaux, U Goebel, A Pop, T Mitchell-Olds
    posted to no-tag by mimulus_99 on 2007-10-03 04:57:27 as read
  • Cis-regulatory evolution of chalcone-synthase expression in the genus Arabidopsis.
    Genetics, Vol. 174, No. 4. (December 2006), pp. 2181-2202.
    by J de Meaux, A Pop, T Mitchell-Olds
    posted to no-tag by mimulus_99 on 2007-10-03 04:55:59 as read
  • Using Reporter Gene Assays to Identify cis Regulatory Differences Between Humans and Chimpanzees
    Genetics, Vol. 176, No. 4. (1 August 2007), pp. 2069-2076.
    by Adrien Chabot, Ralla A Shrit, Ran Blekhman, Yoav Gilad
    posted to no-tag by mimulus_99 on 2007-10-02 00:13:39 as *** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Mixture modeling of transcript abundance classes in natural populations
    Genome Biology, Vol. 8 (04 June 2007), R98.
    by Wenping Hsieh, Gisele Passador-Gurgel, Eric A Stone, Greg Gibson
    posted to no-tag by mimulus_99 on 2007-09-23 00:40:13 as ** along with 1 person qfwills
  • Identifying Signatures of Selection at the Enhancer of split Neurogenic Gene Complex in Drosophila
    Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 607-619.
    by Stuart J Macdonald, Anthony D Long
    posted to no-tag by mimulus_99 on 2007-09-13 08:10:42 as **
  • A potential regulatory polymorphism upstream of hairy is not associated with bristle number variation in wild-caught Drosophila.
    Genetics, Vol. 167, No. 4. (August 2004), pp. 2127-2131.
    by SJ Macdonald, AD Long
    posted to no-tag by mimulus_99 on 2007-09-12 00:20:51 as *****
  • How repeatable are associations between polymorphisms in achaete-scute and bristle number variation in Drosophila?
    Genetics (4 February 2007)
    by Jonathan D D Gruber, Anne Genissel, Stuart J J Macdonald, Anthony D D Long
    posted to no-tag by mimulus_99 on 2007-09-12 00:20:27 as ***** along with 1 person and 1 group dpollard EisenLab
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