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maximilianh enhancerprediction [26 articles]

最近 maximilianh さんのライブラリに追加された論文の中から タグ enhancerprediction. You can also see everyone's enhancerprediction.
  • Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
    Genome Res. (15 May 2008), gr.072769.107.
    by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong
    posted to enhancerprediction by maximilianh on 2008-10-03 17:09:44 as ** along with 5 people idonaldson isimpson GustavoLacerda phoenixzxl yoonk
  • A regulatory code for neurogenic gene expression in the Drosophila embryo.
    Development, Vol. 131, No. 10. (May 2004), pp. 2387-2394.
    by M Markstein, R Zinzen, P Markstein, KP Yee, A Erives, A Stathopoulos, M Levine
    posted to enhancerprediction rennes validated by maximilianh on 2008-06-16 23:41:37 as ** along with 2 people dquest blobbybirdman
  • Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e53.
    by Anthony A Philippakis, Brian W Busser, Stephen S Gisselbrecht, Fangxue S He, Beatriz Estrada, Alan M Michelson, Martha L Bulyk
    posted to combination enhancerprediction by maximilianh on 2008-06-16 23:40:34 as ** along with 1 person and 1 group emilyhare EisenLab
  • Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
    Genome Biol, Vol. 5, No. 9. (2004)
    by BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, SE Celniker
    posted to enhancerprediction by maximilianh on 2008-06-12 12:17:31 as ** along with 7 people and 3 groups mbeisen indigoviolet adepace Stew nklee cisevol Auger EisenLab cis-regulatory-evolution Dead 60's
  • Studying the functional conservation of cis-regulatory modules and their transcriptional output
    BMC Bioinformatics, Vol. 9 (29 April 2008), 220.
    by Denis C Bauer, Timothy L Bailey
    posted to enhancerprediction noalignment notconserved by maximilianh on 2008-05-01 09:16:32 as ** along with 2 people and 1 group cisevol xili03 cis-regulatory-evolution
  • Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model.
    J Comput Biol (11 March 2008)
    by Jing Wu, Jun Xie
    posted to enhancerprediction by maximilianh on 2008-03-14 17:20:03 as ** along with 3 people and 1 group cisevol csdhwang pradiptaray BergmanLab
  • Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers
    The EMBO Journal, Vol. aop, No. current. (15 November 2007)
    by Seongjin Seo, Jong-Won Lim, Dhananjay Yellajoshyula, Li-Wei Chang, Kristen L Kroll
    posted to enhancerprediction by maximilianh on 2008-03-09 00:41:03 as ** along with 1 person isimpson
  • Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences.
    Proc Natl Acad Sci U S A, Vol. 102, No. 28. (12 July 2005), pp. 9830-9835.
    by JR Hughes, JF Cheng, N Ventress, S Prabhakar, K Clark, E Anguita, M De Gobbi, P de Jong, E Rubin, DR Higgs
    posted to alignment cns cns-ranking enhancerprediction by maximilianh on 2008-03-05 10:24:56 as ** along with 1 person olympos
  • In vivo enhancer analysis of human conserved non-coding sequences
    Nature
    by Len A Pennacchio, Nadav Ahituv, Alan M Moses, Shyam Prabhakar, Marcelo A Nobrega, Malak Shoukry, Simon Minovitsky, Inna Dubchak, Amy Holt, Keith D Lewis, Ingrid Plajzer-Frick, Jennifer Akiyama, Sarah De Val, Veena Afzal, Brian L Black, Olivier Couronne, Michael B Eisen, Axel Visel, Edward M Rubin
    posted to conserved enhancerprediction by maximilianh on 2008-02-29 17:30:33 as ** along with 3 people cckan heliopais gjuggler
  • Computational prediction of novel components of lung transcriptional networks
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 21-29.
    by Juanita M Martinez, Andrew D Smith, Bilan Li, Michael Q Zhang, Kevin S Harrod
    posted to enhancerprediction motif scanning by maximilianh on 2008-02-29 17:19:30 as ** along with 1 person olympos
  • Computational discovery of cis-regulatory modules in Drosophila, without prior knowledge of motifs
    Genome Biology, Vol. 9, No. 1. (2008)
    by Andra Ivan, Marc Halfon, Saurabh Sinha
    posted to combination discovery enhancerprediction motif by maximilianh on 2008-02-29 16:39:34 as ** along with 2 people and 1 group cisevol csdhwang cis-regulatory-evolution
  • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.
    J Mol Biol, Vol. 296, No. 5. (10 March 2000), pp. 1205-1214.
    by JD Hughes, PW Estep, S Tavazoie, GM Church
    posted to discovery enhancerprediction motif by maximilianh on 2008-02-29 14:22:57 as ** along with 4 people and 2 groups kaspermunch dquest dandaman Auger Bioinformatics Dead 60's
  • Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model.
    Genome Res, Vol. 12, No. 7. (July 2002), pp. 1019-1028.
    by MS Halfon, Y Grad, GM Church, AM Michelson
    posted to combination conserved enhancerprediction motif scanning by maximilianh on 2008-02-29 13:02:28 as ** along with 1 person isimpson
  • De novo discovery of a tissue-specific gene regulatory module in a chordate
    Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1315-1324.
    by David S Johnson, Qing Zhou, Kasumi Yagi, Nori Satoh, Wing Wong, Arend Sidow
    posted to application ciona enhancerprediction rennes by maximilianh on 2008-02-29 12:37:06 as **
  • Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans.
    Dev Cell, Vol. 6, No. 6. (June 2004), pp. 757-770.
    by AS Wenick, O Hobert
    posted to ciona enhancerprediction by maximilianh on 2008-02-29 09:21:58 as ** along with 4 people and 3 groups tharris ana blobbybirdman carlfulp C. elegans / WormBase structural_bioinformatics Bioinformatics
  • Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees.
    BMC Bioinformatics, Vol. 8 Suppl 10 (2007)
    by X Chen, M Blanchette
    posted to conserved enhancerprediction by maximilianh on 2008-02-28 09:48:55 as ** along with 1 person roys
  • Combining pattern discovery and discriminant analysis to predict gene co-regulation.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2370-2379.
    by N Simonis, SJ Wodak, GN Cohen, J van Helden
    posted to enhancerprediction by maximilianh on 2008-02-07 14:18:35 as **
  • Biological code breaking in the 21st century
    Mol Syst Biol, Vol. 2 (2 May 2006)
    by Alan M Michelson, Martha L Bulyk
    posted to enhancerprediction by maximilianh on 2008-01-23 16:34:24 as **
  • Predicting tissue-specific enhancers in the human genome.
    Genome Res (8 January 2007)
    by Len A A Pennacchio, Gabriela G G Loots, Marcelo A A Nobrega, Ivan Ovcharenko
    posted to enhancerprediction by maximilianh on 2008-01-17 11:17:12 as ** along with 5 people and 1 group indigoviolet cwbrown heliopais roys barwil EisenLab
  • notes High-resolution analysis of condition-specific regulatory modules in Saccharomyces cerevisiae
    Genome Biology, Vol. 9 (03 January 2008), R2.
    by Hun-Goo Lee, Hyo-Soo Lee, Sang-Hoon Jeon, Tae-Hoon Chung, Young-Sung Lim, Won-Ki Huh
    posted to enhancerprediction by maximilianh on 2008-01-16 10:26:12 as ** along with 1 person roys
  • A global genomic transcriptional code associated with CNS-expressed genes
    Experimental Cell Research, Vol. 312, No. 16. (1 October 2006), pp. 3108-3119.
    by Peter J Bailey, Joanna M Klos, Elisabet Andersson, Mattias Karlen, Magdalena Kallstrom, Jasmina Ponjavic, Jonas Muhr, Boris Lenhard, Albin Sandelin, Johan Ericson
    posted to enhancerprediction motif scanning by maximilianh on 2008-01-15 18:01:27 as **
  • Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation
    Nature Methods, Vol. 4, No. 7. (24 June 2007), pp. 563-565.
    by Laurence Ettwiller, Benedict Paten, Mirana Ramialison, Ewan Birney, Joachim Wittbrodt
    posted to discovery enhancerprediction motif by maximilianh on 2008-01-14 17:38:41 as ** along with 3 people and 1 group brant zwang fpattyn EisenLab
  • Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59.
    by Outi Hallikas, Kimmo Palin, Natalia Sinjushina, Reetta Rautiainen, Juha Partanen, Esko Ukkonen, Jussi Taipale
    posted to enhancerprediction noalignment by maximilianh on 2008-01-14 16:04:36 as ** along with 13 people and 5 groups Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel heliopais oelemento emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
  • Locating potential enhancer elements by comparative genomics using the EEL software.
    Nat Protoc, Vol. 1, No. 1. (2006), pp. 368-374.
    by K Palin, J Taipale, E Ukkonen
    posted to enhancerprediction scanning by maximilianh on 2008-01-14 16:04:07 as ** along with 1 person Terkko
  • Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by S Aerts, J van Helden, O Sand, BA Hassan
    posted to cns conserved drosophila enhancerprediction scanning by maximilianh on 2007-12-08 15:34:13 as ** along with 4 people and 1 group brant idonaldson barwil isimpson cis-regulatory-evolution
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to discovery enhancerprediction motif by maximilianh on 2007-10-31 13:48:59 as ** along with 12 people and 2 groups ana brant cwbrown aswin cjeans zwang cabbagezs nklee idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
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