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marcius model_assessment [19 articles]

最近 marcius さんのライブラリに追加された論文の中から タグ model_assessment. You can also see everyone's model_assessment.
  • Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space.
    Proteins, Vol. 50, No. 1. (1 January 2003), pp. 35-43.
    by S Miyazawa, RL Jernigan
    posted to computational_biology model_assessment statistical_potentials by marcius on 2006-03-07 18:44:30 as ** along with 1 person and 4 groups ana structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Knowledge-based potential functions in protein design.
    Curr Opin Struct Biol, Vol. 12, No. 4. (August 2002), pp. 447-452.
    by WP Russ, R Ranganathan
    posted to biophysics model_assessment protein_structure review by marcius on 2006-01-20 23:02:36 as ** along with 1 person and 2 groups gbart BioinfoCIPF SGU-CIPF
  • Database-derived potentials dependent on protein size for in silico folding and design.
    Biophys J, Vol. 87, No. 1. (July 2004), pp. 171-181.
    by Y Dehouck, D Gilis, M Rooman
    posted to computational_biology model_assessment by marcius on 2006-01-20 22:59:04 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • An information theoretic approach to macromolecular modeling: I. Sequence alignments.
    Biophys J, Vol. 89, No. 5. (November 2005), pp. 2998-3007.
    by T Aynechi, ID Kuntz
    posted to bioinformatics biophysics model_assessment sequence_alignment by marcius on 2006-01-20 22:56:59 as ** along with 1 person and 2 groups nickolay BioinfoCIPF SGU-CIPF
  • An Information Theoretic Approach to Macromolecular Modeling: II. Force Fields.
    Biophys J, Vol. 89, No. 5. (November 2005), pp. 3008-3016.
    by T Aynechi, ID Kuntz
    posted to bioinformatics biophysics computational_biology model_assessment molecular_dynamics by marcius on 2006-01-20 22:54:26 as ** along with 1 person and 2 groups nickolay BioinfoCIPF SGU-CIPF
  • Prediction of protein thermostability with a direction- and distance-dependent knowledge-based potential.
    Protein Sci, Vol. 14, No. 10. (October 2005), pp. 2682-2692.
    by C Hoppe, D Schomburg
    posted to model_assessment protein_structure protein_threading by marcius on 2006-01-19 19:51:53 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Improving sequence-based fold recognition by using 3D model quality assessment.
    Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3509-3515.
    by CS Pettitt, LJ McGuffin, DT Jones
    posted to biophysics model_assessment protein_threading by marcius on 2006-01-13 23:57:18 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Automatic assessment of alignment quality
    Nucleic Acids Research, Vol. 33, No. 22. (2005), pp. 7120-7128.
    by Timo Lassmann, Erik L Sonnhammer
    posted to bioinformatics model_assessment sequence_alignment by marcius on 2006-01-12 19:11:40 as ** along with 1 person and 2 groups BioNica BioinfoCIPF SGU-CIPF
  • Practical lessons from protein structure prediction.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891.
    by K Ginalski, NV Grishin, A Godzik, L Rychlewski
    posted to cafasp casp comparative_modeling model_assessment structure_prediction by marcius on 2005-12-22 06:53:06 as ** along with 7 people and 4 groups ana aalibes thaliana okarsligil duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.
    Proteins (26 September 2005)
    by Andrzej Koliński, Janusz M M Bujnicki
    posted to ab-initio bioinformatics comparative_modeling model_assessment structure_prediction by marcius on 2005-10-22 09:12:12 as *** along with 2 people and 2 groups nigham dgront BioinfoCIPF SGU-CIPF
  • Protein structure prediction using a variety of profile libraries and 3D verification.
    Proteins (26 September 2005)
    by Kentaro Tomii, Takatsugu Hirokawa, Chie Motono
    posted to bioinformatics cafasp casp model_assessment structure_prediction by marcius on 2005-10-22 09:11:09 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • TASSER: An automated method for the prediction of protein tertiary structures in CASP6.
    Proteins (26 September 2005)
    by Yang Zhang, Adrian K K Arakaki, Jeffrey Skolnick
    posted to cafasp casp model_assessment structure_alignment by marcius on 2005-10-22 08:58:50 as ** along with 4 people and 2 groups nigham dgront schuylrp mirzazadeh BioinfoCIPF SGU-CIPF
  • Prediction of novel and analogous folds using fragment assembly and fold recognition.
    Proteins (26 September 2005)
    by D T T Jones, K Bryson, A Coleman, L J J McGuffin, M I I Sadowski, J S S Sodhi, J J J Ward
    posted to cafasp casp comparative_modeling model_assessment protein_fragments protein_structure structure_prediction by marcius on 2005-10-22 08:57:29 as **** along with 2 groups BioinfoCIPF SGU-CIPF
  • SPARKS 2 and SP(3) servers in CASP 6.
    Proteins (26 September 2005)
    by Hongyi Zhou, Yaoqi Zhou
    posted to cafasp casp comparative_modeling model_assessment protein_structure structure_prediction by marcius on 2005-10-22 08:56:27 as *** along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
  • Scoring function for automated assessment of protein structure template quality
    Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4., pp. 702-710.
    by Yang Zhang, Jeffrey Skolnick
    posted to computational_biology model_assessment protein_structure by marcius on 2005-10-21 21:55:27 as * along with 5 people and 2 groups karbak dgront aengisch rabio granujilla BioinfoCIPF SGU-CIPF
  • Can correct protein models be identified?
    Protein Sci, Vol. 12, No. 5. (May 2003), pp. 1073-1086.
    by B Wallner, A Elofsson
    posted to cafasp casp model_assessment by marcius on 2005-10-21 21:10:50 as ** along with 1 person and 2 groups j3xucite BioinfoCIPF SGU-CIPF
  • Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functions.
    Proteins, Vol. 52, No. 4. (1 September 2003), pp. 492-509.
    by LR Forrest, TB Woolf
    posted to computational_biology model_assessment protein_structure software by marcius on 2005-10-21 21:08:44 as * along with 1 person and 2 groups thaliana BioinfoCIPF SGU-CIPF
  • Effective energy function for proteins in solution.
    Proteins, Vol. 35, No. 2. (1 May 1999), pp. 133-152.
    by T Lazaridis, M Karplus
    posted to computational_biology model_assessment protein_folding software by marcius on 2005-10-21 21:08:08 as *** along with 4 people and 2 groups bluvsh1 choonpeng hmk kgutwin BioinfoCIPF SGU-CIPF
  • Derivation of protein-specific pair potentials based on weak sequence fragment similarity.
    Proteins, Vol. 38, No. 1. (1 January 2000), pp. 3-16.
    by J Skolnick, A Kolinski, A Ortiz
    posted to biophysics model_assessment statistical_potentials by marcius on 2005-10-21 20:27:37 as ***** along with 2 people and 2 groups dgront mcbla BioinfoCIPF SGU-CIPF
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