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marcius folding [41 articles]

最近 marcius さんのライブラリに追加された論文の中から タグ folding. You can also see everyone's folding.
  • Recent advances in the development and application of implicit solvent models in biomolecule simulations.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 217-224.
    by M Feig, CL Brooks
    posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:50:01 as ** along with 5 people and 2 groups apostola simone ttjoseph gane5h RamuAnandakrishnan BioinfoCIPF SGU-CIPF
  • Effective energy functions for protein structure prediction.
    Curr Opin Struct Biol, Vol. 10, No. 2. (April 2000), pp. 139-145.
    by T Lazaridis, M Karplus
    posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:49:24 as ** along with 2 people and 2 groups karbak nigham BioinfoCIPF SGU-CIPF
  • Empirical force fields for biological macromolecules: Overview and issues
    Journal of Computational Chemistry, Vol. 25, No. 13. (1 July 2004), pp. 1584-1604.
    by Alexander D Mackerell
    posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:47:07 as ** along with 5 people and 2 groups BragilMassoud dgront loison mirzazadeh AndreaColetta BioinfoCIPF SGU-CIPF
  • Force fields for protein simulations.
    Adv Protein Chem, Vol. 66 (2003), pp. 27-85.
    by JW Ponder, DA Case
    posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:46:40 as ** along with 3 people and 2 groups karbak papatonyhill hmk BioinfoCIPF SGU-CIPF
  • Thermodynamics of protein folding: a microscopic view.
    Biophys Chem, Vol. 100, No. 1-3. (2003), pp. 367-395.
    by T Lazaridis, M Karplus
    posted to biophysics foce_field folding protein_structure review by marcius on 2006-10-02 10:46:31 as ** along with 1 person and 2 groups karbak BioinfoCIPF SGU-CIPF
  • How do RNA folding algorithms work?
    Nature Biotechnology, Vol. 22, No. 11., 1457.
    by Sean R Eddy
    posted to algorithms bioinformatics biophysics folding review rna by marcius on 2006-09-08 11:14:16 as ** along with 10 people and 2 groups evaf tardigrade mtagaya 3times3 cthachuk magnolia maralena guxiyou cambray austin BioinfoCIPF SGU-CIPF
  • Efficient computation of RNA folding dynamics
    Journal of Physics A: Mathematical and General, Vol. 37, No. 17. (2004), pp. 4731-4741.
    by Michael T Wolfinger, Andreas, Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    posted to biophysics folding rna by marcius on 2006-07-24 17:47:12 as ** along with 2 people and 2 groups ilh mtw BioinfoCIPF SGU-CIPF
  • Structural biologyProteins downhill all the way
    Nature, Vol. 442, No. 7100. (19 July 2006), pp. 255-256.
    by Jeffery W Kelly
    posted to biophysics folding news protein_structure views by marcius on 2006-07-20 10:06:15 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Atom-by-atom analysis of global downhill protein folding
    Nature, Vol. 442, No. 7100. (14 June 2006), pp. 317-321.
    by Mourad Sadqi, David Fushman, Victor Muñoz
    posted to biophysics folding protein_structure by marcius on 2006-07-20 10:05:38 as ** along with 4 people and 2 groups wouterboomsma choonpeng gisle huyun110 BioinfoCIPF SGU-CIPF
  • Co-transcriptional folding is encoded within RNA genes.
    BMC Mol Biol, Vol. 5, No. 1. (6 August 2004)
    by IM Meyer, I Miklós
    posted to biophysics folding rna by marcius on 2006-07-18 12:23:54 as ** along with 4 people and 3 groups evaf condon Hosna raylim beta BioinfoCIPF SGU-CIPF
  • Strategies for RNA folding and assembly.
    Nat Rev Mol Cell Biol, Vol. 5, No. 11. (November 2004), pp. 908-919.
    by R Schroeder, A Barta, K Semrad
    posted to biophysics folding review rna by marcius on 2006-07-13 10:25:25 as ** along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
  • Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
    BMC Bioinformatics, Vol. 5 (4 August 2004)
    by J Reeder, R Giegerich
    posted to biophysics folding rna secondary_structure by marcius on 2006-05-18 09:02:38 as ** along with 4 people and 3 groups eckart_bindewald arcticrasta condon Hosna beta BioinfoCIPF SGU-CIPF
  • Tertiary Motifs in RNA Structure and Folding.
    Angew Chem Int Ed Engl, Vol. 38, No. 16. (August 1999), pp. 2326-2343.
    by RT Batey, RP Rambo, JA Doudna
    posted to folding rna structure by marcius on 2006-05-18 00:21:04 as ** along with 3 people and 3 groups condon jarasch physics beta BioinfoCIPF SGU-CIPF
  • Counterion Charge Density Determines the Position and Plasticity of RNA Folding Transition States
    Journal of Molecular Biology, Vol. 359, No. 2. (2 June 2006), pp. 446-454.
    by Eda Koculi, D Thirumalai, Sarah A Woodson
    posted to biophysics folding rna by marcius on 2006-05-17 00:38:30 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • A complex adaptive systems approach to the kinetic folding of RNA.
    Biosystems, Vol. 82, No. 3. (December 2005), pp. 257-265.
    by W Ndifon
    posted to biophysics folding rna by marcius on 2006-05-11 07:36:14 as ** along with 1 person and 2 groups arcticrasta BioinfoCIPF SGU-CIPF
  • RDfolder: a web server for prediction of RNA secondary structure.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by X Ying, H Luo, J Luo, W Li
    posted to bioinformatics folding rna secondary_structure servers by marcius on 2006-05-09 19:20:02 as ** along with 1 person and 2 groups arcticrasta BioinfoCIPF SGU-CIPF
  • Memory efficient folding algorithms for circular RNA secondary structures
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1172-1176.
    by Ivo L Hofacker, Peter F Stadler
    posted to algorithms bioinformatics folding programming rna secondary_structure by marcius on 2006-05-09 03:57:20 as ** along with 1 person and 2 groups ilh BioinfoCIPF SGU-CIPF
  • Complete suboptimal folding of RNA and the stability of secondary structures.
    Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165.
    by S Wuchty, W Fontana, IL Hofacker, P Schuster
    posted to biophysics folding rna secondary_structure by marcius on 2006-04-30 01:11:30 as ** along with 3 people and 2 groups eckart_bindewald arcticrasta ilh BioinfoCIPF SGU-CIPF
  • Beyond kinetic traps in RNA folding
    Current Opinion in Structural Biology, Vol. 11, No. 3. (1 June 2001), pp. 309-314.
    by Daniel K Treiber, James R Williamson
    posted to biophysics folding rna by marcius on 2006-04-30 01:10:59 as ** along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
  • Stitching together RNA tertiary architectures
    Journal of Molecular Biology, Vol. 294, No. 4. (10 December 1999), pp. 829-849.
    by Thomas Hermann, Dinshaw J Patel
    posted to biophysics folding rna structure by marcius on 2006-04-24 07:42:53 as ** along with 3 people and 3 groups ttjoseph condon jarasch beta BioinfoCIPF SGU-CIPF
  • Predicting free energy landscapes for complexes of double-stranded chain molecules
    The Journal of Chemical Physics, Vol. 114, No. 9. (2001), pp. 4253-4266.
    by Wenbing Zhang, Shi J Chen
    posted to biophysics computational_biology dna folding rna by marcius on 2006-04-21 22:11:14 as ** along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
  • Theory for the conformational changes of double-stranded chain molecules
    The Journal of Chemical Physics, Vol. 109, No. 11. (1998), pp. 4602-4616.
    by Shi J Chen, Ken A Dill
    posted to biophysics computational_biology dna folding rna by marcius on 2006-04-21 22:11:01 as ** along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
  • Statistical thermodynamics of double-stranded polymer molecules
    The Journal of Chemical Physics, Vol. 103, No. 13. (1995), pp. 5802-5813.
    by Shi J Chen, Ken A Dill
    posted to biophysics computational_biology dna folding rna by marcius on 2006-04-21 22:10:14 as ** along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
  • RNA folding energy landscapes
    PNAS, Vol. 97, No. 2. (18 January 2000), pp. 646-651.
    by Shi-Jie Chen, Ken A Dill
    posted to biophysics folding rna by marcius on 2006-04-21 22:09:25 as ** along with 3 people and 3 groups condon mtw ARobson beta BioinfoCIPF SGU-CIPF
  • A comparison of RNA folding measures.
    BMC Bioinformatics, Vol. 6, No. 1. (3 October 2005)
    by Eva Freyhult, Paul P Gardner, Vincent Moulton
    posted to biophysics folding rna by marcius on 2006-04-18 19:11:54 as ** along with 5 people and 4 groups imouthesmp eckart_bindewald mtagaya bsmagic Kiarostami Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
  • One Sequence, Two Ribozymes: Implications for the Emergence of New Ribozyme Folds
    Science, Vol. 289, No. 5478. (21 July 2000), pp. 448-452.
    by Erik A Schultes, David P Bartel
    posted to folding ribozyme by marcius on 2006-04-18 19:11:35 as ** along with 3 people and 3 groups condon Hosna austin beta BioinfoCIPF SGU-CIPF
  • Topology of pseudoknotted homopolymers.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 73, No. 3 Pt 1. (March 2006)
    by G Vernizzi, P Ribeca, H Orland, A Zee
    posted to folding ncrna rna by marcius on 2006-04-18 00:18:42 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • STRATEGIES FOR RNA FOLDING AND ASSEMBLY
    Nat Rev Mol Cell Biol, Vol. 5, No. 11. (November 2004), pp. 908-919.
    by Renee Schroeder, Andrea Barta, Katharina Semrad
    posted to folding review rna by marcius on 2006-04-17 04:34:02 as ** along with 2 people and 3 groups condon kieran101 beta BioinfoCIPF SGU-CIPF
  • Capturing expert knowledge with argumentation: a case study in bioinformatics
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 924-933.
    by Benjamin R Jefferys, Lawrence A Kelley, Marek J Sergot, John Fox, Michael J Sternberg
    posted to bioinformatics folding servers by marcius on 2006-04-08 00:06:27 as ** along with 3 people and 2 groups mdimmic vavi eweaver BioinfoCIPF SGU-CIPF
  • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
    Nucleic Acids Res, Vol. 9, No. 1. (10 January 1981), pp. 133-148.
    by M Zuker, P Stiegler
    posted to ab-initio biophysics folding rna by marcius on 2006-03-18 20:59:28 as ** along with 5 people and 2 groups evaf arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
  • Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency
    RNA, Vol. 11, No. 5. (1 May 2005), pp. 578-591.
    by Peter Clote, Fabrizio Ferre, Evangelos Kranakis, Danny Krizanc
    posted to computational_biology folding rna by marcius on 2006-03-17 07:35:58 as ** along with 2 people and 2 groups arcticrasta elfar BioinfoCIPF SGU-CIPF
  • Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function.
    J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196.
    by LA Mirny, EI Shakhnovich
    posted to biophysics evolution folding by marcius on 2006-03-14 17:21:55 as ** along with 3 people and 4 groups ana barry Einat structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • How RNA folds.
    J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281.
    by I Tinoco, C Bustamante
    posted to biophysics evolution folding rna by marcius on 2006-03-06 23:02:38 as ** along with 9 people and 3 groups eskay dayjm eckart_bindewald perrywoo arcticrasta condon Hosna apop physics beta BioinfoCIPF SGU-CIPF
  • On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?
    J Struct Biol, Vol. 134, No. 2-3. (n 2001), pp. 191-203.
    by AN Lupas, CP Ponting, RB Russell
    posted to bioinformatics evolution folding protein_domains protein_fragments by marcius on 2006-02-24 06:52:09 as ** along with 1 person and 2 groups chad_davis BioinfoCIPF SGU-CIPF
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
    posted to bioinformatics classification folding protein_domains by marcius on 2006-01-27 01:16:19 as ** along with 5 people and 4 groups ana tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Creation of GPCR-based chemical sensors by directed evolution in yeast
    Protein Engineering, Design and Selection, Vol. 19, No. 1. (January 2006), pp. 1-8.
    by Addison D Ault, James R Broach
    posted to biophysics evolution folding by marcius on 2005-12-28 09:10:05 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Are proteins made from a limited parts list?
    Trends Biochem Sci, Vol. 30, No. 2. (February 2005), pp. 73-80.
    by NC Fitzkee, PJ Fleming, H Gong, N Panasik, TO Street, GD Rose
    posted to folding protein_fragments by marcius on 2005-12-22 20:38:35 as ** along with 2 people and 2 groups kentsis owarburg BioinfoCIPF SGU-CIPF
  • Protein structure prediction: inroads to biology.
    Mol Cell, Vol. 20, No. 6. (22 December 2005), pp. 811-819.
    by D Petrey, B Honig
    posted to bioinformatics folding protein_structure review structure_prediction by marcius on 2005-12-22 00:53:03 as ** along with 3 people and 2 groups vavi penka Haggan BioinfoCIPF SGU-CIPF
  • RNA folding: models and perspectives.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 309-316.
    by TR Sosnick, T Pan
    posted to biophysics computational_biology folding rna structure by marcius on 2005-12-20 01:07:48 as ** along with 3 people and 2 groups evaf Hosna austin BioinfoCIPF SGU-CIPF
  • Reduced contact order and RNA folding rates.
    J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1359-1365.
    by TR Sosnick, T Pan
    posted to folding rna structure by marcius on 2005-12-20 01:06:56 as ** along with 2 people and 2 groups evaf emidio_capriotti BioinfoCIPF SGU-CIPF
  • RNA folding and unfolding.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 374-379.
    by B Onoa, I Tinoco
    posted to biophysics folding rna structure by marcius on 2005-12-20 01:06:32 as ** along with 6 people and 3 groups evaf arcticrasta condon Hosna emidio_capriotti apop beta BioinfoCIPF SGU-CIPF
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