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lyongu library [154 articles]

最近 lyongu さんのライブラリ .
  • From signatures to models: understanding cancer using microarrays - Nature Genetics
    posted to no-tag by lyongu on 2006-02-17 10:12:08 as ***** along with 1 person karfunkel
  • On the mathematical foundations of theoretical statistics
    posted to statistics by lyongu on 2006-02-16 21:52:02 as **
  • Hidden Markov Models of Biological Primary Sequence Information
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 3. (1994), pp. 1059-1063.
    by Pierre Baldi, Yves Chauvin, Tim Hunkapiller, Marcella A Mcclure
    posted to hmm sequence by lyongu on 2006-02-09 17:24:34 as **
  • MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    posted to motif transcription by lyongu on 2006-02-09 04:18:20 as ** along with 1 person ranb
  • Reverse engineering of biological complexity.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669.
    by ME Csete, JC Doyle
  • Missing value estimation methods for DNA microarrays.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 520-525.
  • Exploring the metabolic and genetic control of gene expression on a genomic scale.
    Science, Vol. 278, No. 5338. (24 October 1997), pp. 680-686.
    by JL DeRisi, VR Iyer, PO Brown
  • From patterns to pathways: gene expression data analysis comes of age
    Nature Genetics
    posted to expression systems_biology by lyongu on 2006-02-07 22:48:00 as *** along with 1 person dquest
  • A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 509-519.
    by P Baldi, AD Long
  • THE USE AND ANALYSIS OF MICROARRAY DATA
    Nat Rev Drug Discov, Vol. 1, No. 12. (December 2002), pp. 951-960.
    by Atul Butte
    posted to microarray by lyongu on 2006-02-07 22:41:58 as ***
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
  • PRINCIPAL COMPONENTS ANALYSIS TO SUMMARIZE MICROARRAY EXPERIMENTS: APPLICATION TO SPORULATION TIME SERIES
    by Soumya Raychaudhuri, Joshua M Stuart, Russ B Altmany
    posted to microarray pca by lyongu on 2006-02-07 22:29:10 as **
  • E2F integrates cell cycle progression with DNA repair, replication, and G2/M checkpoints
    Genes Dev., Vol. 16, No. 2. (15 January 2002), pp. 245-256.
    by Bing Ren, Hieu Cam, Yasuhiko Takahashi, Thomas Volkert, Jolyon Terragni, Richard A Young, Brian D Dynlacht
    posted to cell_cycle by lyongu on 2006-02-07 20:42:43 as *** along with 1 person catcremona
  • Towards a proteome-scale map of the human protein–protein interaction network
    Nature (28 September 2005)
    by Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S Goldberg, Lan V Zhang, Sharyl L Wong, Giovanni Franklin, Siming Li, Joanna S Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S Sikorski, Jean Vandenhaute, Huda Y Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
  • Gibbs Recursive Sampler: finding transcription factor binding sites
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3580-3585.
    by William Thompson, Eric C Rouchka, Charles E Lawrence
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
  • Computational systems biology.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210.
    by H Kitano
  • Algorithms for Phylogenetic Footprinting
    posted to phylo by lyongu on 2006-02-02 21:23:26 as **
  • Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting
    Genome Res., Vol. 12, No. 5. (1 May 2002), pp. 739-748.
    by Mathieu Blanchette, Martin Tompa
  • PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates
    posted to motif sampling by lyongu on 2006-02-02 18:52:33 as ***
  • Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals
    Nature, Vol. aop, No. current. (27 February 2005)
    by Xiaohui Xie, Jun Lu, EJ Kulbokas, Todd R Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S Lander, Manolis Kellis
  • Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment
    by Charles E Lawrence, Stephen F Altschul, Mark S Boguski, Jun S Liu, Andrew F Neuwald, John C Wootton
    posted to motif sampling by lyongu on 2006-02-02 08:29:33 as *****
  • NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
    Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1445-1453.
    by Thomas A Down, Tim J Hubbard
    posted to motif by lyongu on 2006-02-01 18:00:24 as ** along with 3 people and 1 group waszak dpollard dquest EisenLab
  • Identification of transcription factor binding sites with variable-order Bayesian networks
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2657-2666.
    by I Ben-Gal, A Shani, A Gohr, J Grau, S Arviv, A Shmilovici, S Posch, I Grosse
    posted to bayesian motif by lyongu on 2006-02-01 17:57:19 as *** along with 1 person nuin
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
  • A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
    Bioinformatics, Vol. 17, No. 12. (1 December 2001), pp. 1113-1122.
    by Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouze, Yves Moreau
  • Bayesian inference on biopolymer models
    Bioinformatics, Vol. 15, No. 1. (1 January 1999), pp. 38-52.
    by Js Liu, Ce Lawrence
    posted to bayesian motif by lyongu on 2006-02-01 17:31:37 as ***
  • Proteome survey reveals modularity of the yeast cell machinery : Nature
  • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183.
  • Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
    Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 451-458.
    by Yueyi Liu, Shirley X Liu, Liping Wei, Russ B Altman, Serafim Batzoglou
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254.
    by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S Lander
    posted to regulatory yeast by lyongu on 2006-01-16 18:58:37 as ** along with 2 people kaarsinogen nklee
  • The transcriptional program of meiosis and sporulation in fission yeast
    Nat Genet, Vol. 32, No. 1. (2002), pp. 143-147.
    by Juan Mata, Rachel Lyne, Gavin Burns, Jurg Bahler
    posted to transcription yeast by lyongu on 2006-01-16 18:44:22 as **
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
  • Evolutionary changes in cis and trans gene regulation
    Nature, Vol. 430, No. 6995. (1 July 2004), pp. 85-88.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
  • French Pronunication Rules
    posted to french by lyongu on 2005-11-09 23:38:42 as **
  • Global Mapping of the Yeast Genetic Interaction Network
    Science, Vol. 303, No. 5659. (06 February 2004), pp. 808-813.
    by Amy HY Tong, Guillaume Lesage, Gary D Bader, Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F Berriz, Renee L Brost, Michael Chang, Yiqun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L Wong, Lan V Zhang, Hongwei Zhu, Christopher G Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P Roth, Grant W Brown, Brenda Andrews, Howard Bussey, Charles Boone
  • Mathematica Tutorial
    posted to mathematica by lyongu on 2005-10-31 08:32:40 as **
  • A Short Introduction to Learning with Kernels
    by Bernhard Schoelkopf, Alexander Smola
    posted to kernel learning statistics by lyongu on 2005-10-31 06:46:25 as ** along with 696 people and 131 groups fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens austin RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing balicea stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term duckysherwood madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl malkav30 p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho danzinde ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen kndiaye aviad_work EsepBib crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak kungcc krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk long pereicoco lieselot yeqiwei amcmorl redelings nojhan mkharito rocarvaj stoev tdpessem briansludwig ttsutsumi wenniehu elsiatcase perhapstoopink atbrew fsteeg digitaldust CDivin whshen andersok fpalm gkvas brembs ragha mgran thomaswuebben justaubrey macfreek lilalia azygmunt ddineen miguelbezerra jdiggans sjgaller huminfly thjt shenshei erikwdavis jsvoboda ceegrs2 jared jijkoun slafont mdifranc GregorSuhr jmurdoch mattlee Repton jvrantwijk ible fruminator mamadoudiao mkowa fellow tzmtzm samjlord abbyworld aozkan giorgis fluomouse Tellima RiccardoAlbertoni annmarie37 ciriol sstoerge gengh goingsomewhere ruddyconsult MichaelGaebler nco71 Vezhnick fabianhemmert shangnan Fahland lossius adriancooke baikanamako elisaformist jsanpedro oceanflynn imaginaryunit bobturner grahamc nascardaughter shariffdinah ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm tkravitz bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar gi0rgi0ne bellia akom kevin7 friveroll khm zetetic karipuf leechuck freddan hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel wongmld jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical Scis0000002 oilpalm spacely j0nes IanBrown TCgroup RalfMitschke ingedwar Oktoplus stonest kaniko cwr jladell rbmoura Leize adjih 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schulz iup massimocencini natasjadenouden nickpitman genericg dmmarinlo jakobl nikko kericson makbot squirmelia ezaydens adenkabe ThomasKluge pdessus Neeperando hrwiltse vrich ranger amydash taenneken gvandyk1 giolakat sarahmccrum melody Corbasson skumagai nlauzier Langster mirweis Stepstep abdulpur tbolt427 jeanbean Axis ablam CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid 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  • Learning with Kernels
    by Alex Smola
    posted to kernel learning statistics by lyongu on 2005-10-31 06:38:06 as ****