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kmdaily library [22 articles]

最近 kmdaily さんのライブラリ .
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254.
    by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S Lander
    posted to bioinformatics genomics motif regulatory transcription by kmdaily on 2008-08-26 21:46:15 as ***** along with 3 people kaarsinogen lyongu nklee
  • TRANSFAC: transcriptional regulation, from patterns to profiles.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 374-378.
    by V Matys, E Fricke, R Geffers, E Gössling, M Haubrock, R Hehl, K Hornischer, D Karas, AE Kel, OV Kel-Margoulis, DU Kloos, S Land, B Lewicki-Potapov, H Michael, R Münch, I Reuter, S Rotert, H Saxel, M Scheer, S Thiele, E Wingender
    posted to bioinformatics biology data genome genomics motif regulatory research search transcription by kmdaily on 2008-08-12 16:35:17 as ** along with 6 people and 1 group aalibes setar chad_davis GustavoLacerda marti Auger Dead 60's
  • Natural Similarity Measures between Position Frequency Matrices with an Application to Clustering.
    Bioinformatics (2 January 2008)
    by Utz J J Pape, Sven Rahmann, Martin Vingron
    posted to algorithms bioinformatics biology computational genome genomics metrics regulatory transcription by kmdaily on 2008-08-12 02:17:19 as **** along with 4 people nklee maximilianh mclarenv csdhwang
  • Whole-genome re-sequencing
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 545-552.
    by David R Bentley
    posted to bioinformatics biology genome genomics research by kmdaily on 2008-05-30 02:19:34 as ** along with 4 people and 3 groups indigoviolet dchughes azazello jo_davies EisenLab G4ID Genetics-of-Gambling
  • Advanced sequencing technologies and their wider impact in microbiology
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1518-1525.
    by Neil Hall
    posted to bioinformatics biology genome genomics research by kmdaily on 2008-05-30 02:19:04 as ** along with 3 people xingxu rschulz bozdagd
  • Next-generation sequencing transforms today's biology
    Nature Methods, Vol. 5, No. 1. (19 December 2007), pp. 16-18.
    by Stephan C Schuster
    posted to bioinformatics genome genomics research by kmdaily on 2008-05-30 02:18:31 as ** along with 6 people umit jyuh yas balicea xingxu bozdagd
  • Using quality scores and longer reads improves accuracy of Solexa read mapping
    BMC Bioinformatics, Vol. 9 (28 February 2008), 128.
    by Andrew D Smith, Zhenyu Xuan, Michael Q Zhang
    posted to algorithms bioinformatics genome genomics research by kmdaily on 2008-05-30 02:15:32 as ** along with 6 people pengchy farhat ghattem mdimon heliopais caseybrown
  • Adaptively inferring human transcriptional subnetworks.
    Mol Syst Biol, Vol. 2 (2006)
    by D Das, Z Nahlé, MQ Zhang
    posted to no-tag by kmdaily on 2007-12-15 08:02:47 as ***** along with 4 people tmmurali wnpx Ao_Li2007 heliopais
  • ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements
    Genome Res. (19 October 2006), gr.4537706.
    by James Taylor, Svitlana Tyekucheva, David C King, Ross C Hardison, Webb Miller, Francesca Chiaromonte
    posted to algorithms bioinformatics biology chromosome computational datamining genome genomics machinelearning motif regulatory search transcription by kmdaily on 2007-12-07 17:51:10 as ***
  • The UCSC Known Genes
    Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1036-1046.
    by Fan Hsu, James W Kent, Hiram Clawson, Robert M Kuhn, Mark Diekhans, David Haussler
    posted to bioinformatics biology computational genome genomics research transcription by kmdaily on 2007-12-06 18:26:04 as **** along with 3 people wenhan antonkratz rschulz
  • Computational Detection and Location of Transcription Start Sites in Mammalian Genomic DNA
    Genome Res., Vol. 12, No. 3. (1 March 2002), pp. 458-461.
    by Thomas A Down, Tim J Hubbard
    posted to bioinformatics biology computational genome genomics motif regulatory research search transcription by kmdaily on 2007-12-04 07:02:47 as **** along with 2 people smiddha olympos
  • Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1005-1014.
    by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki
    posted to bioinformatics genome genomics motif regulatory by kmdaily on 2007-12-04 07:01:46 as **** along with 6 people and 2 groups nickluscombe djkt cabbagezs toshiaki_katayama antonkratz cisevol EBI-regulation cis-regulatory-evolution
  • Evaluating Virtual Screening Methods: Good and Bad Metrics for the "Early Recognition" Problem.
    J Chem Inf Model (9 February 2007)
    by Jean-François F Truchon, Christopher I Bayly
    posted to analysis bedroc cheminformatics computational data datamining metrics ranking virtualscreening by kmdaily on 2007-10-08 18:23:46 as read along with 3 people BragilMassoud baldigroup sithmein
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder
    posted to biology genome genomics research by kmdaily on 2007-10-04 22:59:51 as **** along with 26 people and 4 groups jyuh carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci krokicki antonkratz Minty hpaces tharris altotor mjoach Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • EXMOTIF: Efficient Structured Motif Extraction
    Algorithms for Molecular Biology, Vol. 1 (16 November 2006), 21.
    by Yongqiang Zhang, Mohammed J Zaki
    posted to algorithms chromosome computational genome genomics motif regulatory search by kmdaily on 2007-10-04 22:57:23 as **
  • sMOTIF: Efficient structured pattern and profile motif search
    Algorithms for Molecular Biology, Vol. 1 (21 November 2006), 22.
    by Yongqiang Zhang, Mohammed J Zaki
    posted to no-tag by kmdaily on 2007-09-21 22:30:56 as read along with 1 person beete
  • Are There Rearrangement Hotspots in the Human Genome?
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e209.eor.
    by Max Alekseyev, Pavel A Pevzner
    posted to analysis bioinformatics chromosome evolution genome genomics rearrangement by kmdaily on 2007-09-15 17:30:47 as ***
  • A Primer on Learning in Bayesian Networks for Computational Biology
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e129.
    by Chris J Needham, James R Bradford, Andrew J Bulpitt, David R Westhead
    posted to analysis bayesian bioinformatics biology computational networks research by kmdaily on 2007-09-04 20:51:56 as ***** along with 7 people and 1 group balicea macle GeeSharpMinor firoozye sobolevnrm bmaust schelhorn baker-group
  • Automated Querying of Genome Databases
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1.
    by Peter Schattner
    posted to analysis bioinformatics genome genomics by kmdaily on 2007-08-13 23:05:09 as *** along with 3 people skhadar mikaelhuss olympos
  • Machine Learning and Its Applications to Biology
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e116.
    by Adi L Tarca, Vincent J Carey, Xue-Wen Chen, Roberto Romero, Sorin Drăghici
    posted to no-tag by kmdaily on 2007-08-13 23:01:04 as ** along with 7 people and 2 groups Borelli skhadar julius cjeans asddd ciga nklee SysbioMPI-TCells Computational_Information_Geometry
  • Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 807-817.
    by VX Jin, H O'geen, S Iyengar, R Green, PJ Farnham
    posted to bioinformatics computational genome genomics regulatory research by kmdaily on 2007-08-13 22:59:52 as ** along with 3 people and 1 group kengg cjeans ghattem Plantandetc
  • An introduction to ROC analysis
    Pattern Recognition Letters, Vol. 27, No. 8. (June 2006), pp. 861-874.
    by Tom Fawcett
    posted to analysis datamining machinelearning ranking roc by kmdaily on 2007-08-13 22:49:39 as read along with 24 people and 6 groups jmetzen MosesCheckley ldietz vavi dquest sdvillal xiaoyan2006 dwf camu schlauchi vmoa drivard nklee imrchen gsiwo tgyork idonaldson napvasconcelos cdeane haiyeong AbnerCYH isimpson jyuh nherveg Bioinformatics Crypto VT_DLRL Randomness LIVIA BergmanLab
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