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kentz library [83 articles]

最近 kentz さんのライブラリ .
  • Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
    Bioinformatics, Vol. 19, No. 17. (2003), pp. 2271-2282.
    by D Husmeier
    posted to methodology import-26-6-08 grn-inference bayesian-networks by kentz on 2008-06-26 11:58:57 as **
  • Inferring Gene Regulatory Networks using Differential Evolution with Local Search Heuristics
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, No. 4. (2007), pp. 634-647.
    by N Noman, H Iba
    posted to s-system import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:57 as **
  • An Introduction to Systems Biology: design principles of biological circuits
    (2007)
    by U Alon
    posted to systems-biology regulation import-26-6-08 by kentz on 2008-06-26 11:58:57 as **
  • Parameter optimization in S-system models
    BMC Systems Biology, Vol. 2, No. 35. (2008)
    by M Vilela, IC Chou, S Vinga, TR Vasconcelos, Voit, JS Almeida
    posted to s-system import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:57 as **
  • An intelligent two-stage evolutionary algorithm for dynamic pathway identification from gene expression profiles
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, No. 4. (2007), pp. 648-660.
    by SY Ho, CH Hsiesh, FC Yu, HL Huang
    posted to s-system import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:57 as **
  • Parameter estimation using simulated annealing for S-system models of biochemical networks
    Bioinformatics, Vol. 23, No. 4. (2007), pp. 480-486.
    by OR Gonzalez, C Kuper, K Jung, PC Naval, E Mendoza
    posted to s-system simulated-annealing import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:57 as **
  • Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm
    Bioinformatics, Vol. 21, No. 7. (2005), pp. 1154-1163.
    by S Kimura, K Ide, A Kashihara, M Kano, M Hatakeyama, R Masui, N Nakagawa, S Yokoyama, S Kuramitsu, A Konagaya
    posted to s-system import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:57 as **
  • Artificial gene networks for objective comparison of analysis algorithms
    Bioinformatics, Vol. 19, No. Suppl. 2. (2003)
    by P Mendes, W Sha, Y Keying
    posted to import-26-6-08 grn-simulation generators by kentz on 2008-06-26 11:58:57 as **
  • SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms
    BMC Bioinformatics, Vol. 7, No. 43. (2006)
    by T Van den Bulcke, K Van Leemput, B Naudts, P van Remortel, H Ma, A Verschoren, B De Moor, K Marchal
    posted to import-26-6-08 grn-simulation generators by kentz on 2008-06-26 11:58:57 as **
  • Exploring the operational characteristics of inference algorithms for transcriptional networks by means of synthetic data
    Artificial Life, Vol. 14, No. 1. (2008), pp. 49-63.
    by K Van Leemput, T Van den Bulcke, T Dhollander, B De Moor, K Marchal, P van Remortel
    posted to methodology import-26-6-08 grn-simulation generators by kentz on 2008-06-26 11:58:56 as **
  • Inference of genetic regulatory networks with recurrent neural network models using particle swarm optimization
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, No. 4. (2007), pp. 681-692.
    by R Xu, Wunsch DC Ii, RL Frank
    posted to additive-regulation-model pso methodology import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:56 as **
  • Inference of gene regulatory networks from time course gene expression data using neural networks and swarm intelligence
    (2006), pp. 1-8.
    by HW Ressom, Y Zhang, J Xuan, Y Wang, R Clarke
    posted to additive-regulation-model pso import-26-6-08 grn-inference aco by kentz on 2008-06-26 11:58:56 as **
  • From coexpression to coregulation: an approach to inferring transcriptional regulation among gene classes from large-scale gene expression data
    Vol. 12 (2000), pp. 928-934.
    by E Mjolsness, T Mann, R Castano, B Wold
    posted to additive-regulation-model simulated-annealing import-26-6-08 grn-inference clustering by kentz on 2008-06-26 11:58:56 as **
  • Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
    Bioinformatics, Vol. 22, No. 7. (2006), pp. 815-822.
    by M Bansal, G Della Gatta, D di Bernardo
    posted to additive-regulation-model import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:56 as **
  • Discovering gene networks with a neural-genetic hybrid
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 2, No. 3. (2005), pp. 231-242.
    by E Keedwell, A Narayanan
    posted to additive-regulation-model import-26-6-08 grn-inference ga by kentz on 2008-06-26 11:58:56 as **
  • Neural model of the genetic network
    Journal of Biological Chemistry, Vol. 276, No. 39. (2001), pp. 36168-36173.
    by J Vohradsky
    posted to additive-regulation-model import-26-6-08 grn-simulation by kentz on 2008-06-26 11:58:56 as **
  • Modeling genetic regulatory dynamics in neural development
    Journal of Computational Biology, Vol. 8, No. 4. (2001), pp. 429-442.
    by M Wahde, J Hertz
    posted to additive-regulation-model import-26-6-08 grn-inference clustering by kentz on 2008-06-26 11:58:56 as **
  • Linear modeling of genetic networks from experimental data
    (2000), pp. 355-366.
    by EP van Someren, LFA Wessels, MJT Reinders
    posted to additive-regulation-model import-26-6-08 grn-inference clustering by kentz on 2008-06-26 11:58:56 as **
  • Modeling regulatory networks with weight matrices
    Vol. 4 (1999), pp. 112-123.
    by DC Weaver, CT Workman, GD Stormo
    posted to additive-regulation-model import-26-6-08 grn-simulation by kentz on 2008-06-26 11:58:56 as **
  • Gene network inference using dynamic bayesian networks
    Bioinformatics, Vol. 19, No. Suppl. 2. (2003)
    by BE Perrin, L Ralaivola, A Mazurie, S Bottani, J Mallet, D'alche F Buc
    posted to additive-regulation-model import-26-6-08 grn-inference bayesian-networks by kentz on 2008-06-26 11:58:56 as **
  • Dynamical systems for discovering protein complexes and functional modules from biological networks
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, No. 2. (2007), pp. 233-249.
    by W Li, Y Liu, HC Huang, Y Peng, Y Lin, WK Ng, KL Ong
    posted to not-understood import-26-6-08 by kentz on 2008-06-26 11:58:56 as **
  • Constructing and analyzing a large-scale gene-to-gene regulatory network - Lasso-constrained inference and biological validation
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 2, No. 3. (2005), pp. 254-261.
    by M Gustafsson, M Hornquist, A Lombardi
    posted to additive-regulation-model import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:56 as **
  • A generalized framework for network component analysis
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 2, No. 4. (2005), pp. 289-301.
    by R Boscolo, C Sabatti, JC Liao, VP Roychowdhury
    posted to additive-regulation-model import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:56 as **
  • Ensemble learning of genetic networks from time-series expression data
    Bioinformatics, Vol. 23, No. 23. (2007), pp. 3225-3231.
    by D Nam, SH Yoon, JF Kim
    posted to additive-regulation-model methodology import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:56 as **
  • A comparison of genetic network models
    Vol. 6 (2001), pp. 508-519.
    by LFA Wessels, EP van Someren, MJT Reinders
    posted to reviews import-26-6-08 by kentz on 2008-06-26 11:58:56 as **
  • Using bayesian networks to analyze gene expression data
    Journal of Computational Biology, Vol. 7, No. 3-4. (2000), pp. 601-620.
    by N Friedman, M Linial, I Nachman, D Pe'er
    posted to reviews import-26-6-08 bayesian-networks by kentz on 2008-06-26 11:58:56 as **
  • Modeling transcriptional regulatory networks
    BioEssays, Vol. 24, No. 12. (2002), pp. 1118-1129.
    by H Bolouri, EH Davidson
    posted to reviews regulation import-26-6-08 by kentz on 2008-06-26 11:58:56 as **
  • Analyzing time series gene expression data
    Bioinformatics, Vol. 20, No. 16. (2004), pp. 2493-2503.
    by Bar Z Joseph
    posted to reviews import-26-6-08 by kentz on 2008-06-26 11:58:56 as **
  • Genetic network inference: from co-expression clustering to reverse engineering
    Bioinformatics, Vol. 16, No. 8. (2000), pp. 707-726.
    by P D'Haeseleer, S Liang, R Somogyi
    posted to reviews import-26-6-08 by kentz on 2008-06-26 11:58:55 as **
  • Untitled
    posted to import-26-6-08 by kentz on 2008-06-26 11:58:55 as **
  • Overview of computational methods for the inference of gene regulatory networks
    Computers and Chemical Engineering, Vol. 29, No. 3. (2005), pp. 519-534.
    by MP Styczynski, G Stephanopoulos
    posted to reviews import-26-6-08 by kentz on 2008-06-26 11:58:55 as **
  • Network Biology: understanding the cell's functional organization
    Nature Reviews. Genetics, Vol. 5, No. 2. (2004), pp. 101-113.
    by AL Barabasi, ZN Oltvai
    posted to reviews import-26-6-08 grn-properties complex-networks by kentz on 2008-06-26 11:58:55 as **
  • Current approaches to gene regulatory network modelling
    BMC Bioinformatics, Vol. 8(Suppl. 6), No. 9. (2007)
    by T Schlitt, A Brazma
    posted to reviews import-26-6-08 grn-simulation by kentz on 2008-06-26 11:58:55 as **
  • Computational analysis of microarray data
    Nature Reviews. Genetics, Vol. 2, No. 6. (2001), pp. 418-427.
    by J Quackenbush
    posted to reviews import-26-6-08 by kentz on 2008-06-26 11:58:55 as **
  • Modeling and simulation of genetic regulatory systems: a literature review
    Journal of Computational Biology, Vol. 9, No. 1. (2002), pp. 69-105.
    by H de Jong
    posted to reviews import-26-6-08 by kentz on 2008-06-26 11:58:55 as **
  • Inferring connectivity of genetic regulatory networks using information-theoretic criteria
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 5, No. 2. (2008), pp. 262-274.
    by W Zhao, E Serpedin, ER Dougherty
    posted to to-read mutual-information import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:55 as **
  • Reverse-engineering of regulatory networks in human B cells
    Nature Genetics, Vol. 37, No. 4. (2005), pp. 382-390.
    by K Basso, AA Margolin, G Stolovitzky, U Klein, Dalla R Favera, A Califano
    posted to to-read mutual-information import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:55 as **
  • Analyzing gene expression time courses
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 2, No. 3. (2005), pp. 179-193.
    by A Schliep, IG Costa, C Steinhoff, A Schonhuth
    posted to import-26-6-08 grn-inference clustering bayesian-networks by kentz on 2008-06-26 11:58:55 as **
  • Inferring adaptive regulation thresholds and association rules from gene expression data through combinatorial optimization learning
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, No. 4. (2007), pp. 624-633.
    by I Ponzoni, FJ Azuaje, JC Augusto, DH Glass
    posted to import-26-6-08 heuristics grn-inference association-rules by kentz on 2008-06-26 11:58:55 as **
  • Cluster analysis and display of genome-wide expression patterns
    PNAS, Vol. 95, No. 25. (1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
    posted to import-26-6-08 correlation clustering by kentz on 2008-06-26 11:58:55 as **
  • Large-scale temporal gene expression mapping of central nervous system development
    PNAS, Vol. 95, No. 1. (1998), pp. 334-339.
    by X Wen, S Fuhrman, GS Michaels, DB Carr, S Smith, JL Barker, R Somogyi
    posted to import-26-6-08 data-sets clustering by kentz on 2008-06-26 11:58:55 as **
  • A fuzzy logic approach to analyzing gene expression data
    Physiol Genomics, Vol. 3, No. 1. (2000), pp. 9-15.
    by PJ Woolf, Y Wang
    posted to import-26-6-08 heuristics grn-inference by kentz on 2008-06-26 11:58:55 as **
  • An effective structure learning method for reconstructing gene networks
    Bioinformatics, Vol. 22, No. 11. (2006), pp. 1367-1374.
    by XW Chen, G Anantha, X Wang
    posted to mutual-information import-26-6-08 grn-inference bayesian-networks by kentz on 2008-06-26 11:58:55 as **
  • A new approach to analyzing gene expression time series data
    (2002), pp. 39-48.
    by Bar Z Joseph, G Gerber, DK Gifford, TS Jaakola, I Simon
    posted to import-26-6-08 clustering by kentz on 2008-06-26 11:58:54 as **
  • Reveal, a general reverse engineering algorithm for inference of genetic network architectures
    Vol. 3 (1998), pp. 18-29.
    by S Liang, S Fuhrman, R Somogyi
    posted to mutual-information import-26-6-08 grn-inference boolean-networks by kentz on 2008-06-26 11:58:54 as **
  • Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions
    Journal of Molecular Biology, Vol. 314, No. 5. (2001), pp. 1053-1066.
    by J Qian, Dolled M Filhart, J Lin, H Yu, M Gerstein
    posted to time-delay import-26-6-08 clustering by kentz on 2008-06-26 11:58:54 as **
  • Inferring gene regulatory networks using the minimum description length principle
    Bioinformatics, Vol. 22, No. 17. (2006), pp. 2129-2135.
    by W Zhao, E Serpedin, ER Dougherty
    posted to time-delay mutual-information import-26-6-08 heuristics grn-inference bayesian-networks by kentz on 2008-06-26 11:58:54 as **
  • A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data
    Bioinformatics, Vol. 21, No. 1. (2005), pp. 71-79.
    by M Zou, SD Conzen
    posted to time-delay import-26-6-08 grn-inference bayesian-networks by kentz on 2008-06-26 11:58:54 as **
  • Inference of transcriptional regulation relationships from gene expression data
    Bioinformatics, Vol. 19, No. 8. (2003), pp. 905-912.
    by AT Kwon, HH Hoos, R Ng
    posted to time-delay import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:54 as **
  • Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling
    BMC Bioinformatics, Vol. 7, No. 26. (2006)
    by X Li, S Rao, W Jiang, C Li, Y Xiao, Z Guo, Q Zhang, L Wang, L Du, J Li, L Li, T Zhang, QK Wang
    posted to time-delay import-26-6-08 grn-inference by kentz on 2008-06-26 11:58:54 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/kentz

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