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kengg chip [57 articles]

最近 kengg さんのライブラリに追加された論文の中から タグ chip. You can also see everyone's chip.
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
    posted to tfs network human genome-wide es chip by kengg on 2008-08-06 14:06:57 as ** along with 13 people Stew dquest brant rklancer kentsis tardigrade balicea tabu cconboy koller faisalm mikaelhuss tdmckee
  • An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 1049-1061.
    by Jonghwan Kim, Jianlin Chu, Xiaohua Shen, Jianlong Wang, Stuart H Orkin
    posted to genome-wide es chip by kengg on 2008-07-24 22:43:13 as ** along with 4 people inesdesantiago jyuh tmmurali maralena
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to tfs network high-throughput genome-wide chip bioinformatics by kengg on 2008-07-14 16:09:02 as ** along with 3 people inesdesantiago caseybrown jjray
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
    posted to nucleosome histone epigenetics chip by kengg on 2008-06-30 14:25:01 as ** along with 5 people inesdesantiago bpcusack caseybrown djkt kambiz
  • Histone Modifications and Expression of Light Regulated Genes in Arabidopsis Are Cooperatively Influenced by Changing Light Conditions.
    Plant physiology (11 June 2008)
    by Lan Guo, Junli Zhou, Axel A A Elling, Jean-Benoit F B Charron, Xing Wang W Deng
    posted to nucleosome light histone chip by kengg on 2008-06-15 18:07:57 as ** along with 1 person jmjimenez
  • Histone Acetylation and Chromatin Remodeling Are Required for UV-B-Dependent Transcriptional Activation of Regulated Genes in Maize
    Plant Cell, Vol. 20, No. 4. (1 April 2008), pp. 827-842.
    by Paula Casati, Mabel Campi, Feixia Chu, Nagi Suzuki, David Maltby, Shenheng Guan, Alma L Burlingame, Virginia Walbot
    posted to uv stress maize dnasei chromatin chip by kengg on 2008-05-30 02:32:38 as **
  • Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
    Plant Methods, Vol. 3 (24 September 2007), 11.
    by Max Haring, Sascha Offermann, Tanja Danker, Ina Horst, Christoph Peterhaensel, Maike Stam
    posted to protocol method maize chip by kengg on 2008-05-21 17:40:12 as ** along with 2 people vega jyuh
  • Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.
    Proceedings of the National Academy of Sciences of the United States of America (8 May 2008)
    by Xiaofei Yu, Li Li, Lei Li, Michelle Guo, Joanne Chory, Yanhai Yin
    posted to tfs jmj chip by kengg on 2008-05-11 01:05:31 as **
  • ARABIDOPSIS TRITHORAX1 Dynamically Regulates FLOWERING LOCUS C Activation via Histone 3 Lysine 4 Trimethylation
    Plant Cell, Vol. 20, No. 3. (1 March 2008), pp. 580-588.
    by Stephane Pien, Delphine Fleury, Joshua S Mylne, Pedro Crevillen, Dirk Inze, Zoya Avramova, Caroline Dean, Ueli Grossniklaus
    posted to epigenetics chip by kengg on 2008-05-01 13:59:16 as **
  • The Highly Similar Arabidopsis Homologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions
    Plant Cell, Vol. 20, No. 3. (1 March 2008), pp. 568-579.
    by Abdelaty Saleh, Raul Alvarez-Venegas, Mehtap Yilmaz, Oahn Le, Guichuan Hou, Monther Sadder, Ayed Al-Abdallat, Yuannan Xia, Guoqinq Lu, Istvan Ladunga, Zoya Avramova
    posted to epigenetics chip by kengg on 2008-05-01 13:59:06 as **
  • Global Analysis of DELLA Direct Targets in Early Gibberellin Signaling in Arabidopsis
    Plant Cell, Vol. 19, No. 10. (1 October 2007), pp. 3037-3057.
    by Rodolfo Zentella, Zhong-Lin Zhang, Mehea Park, Stephen G Thomas, Akira Endo, Kohji Murase, Christine M Fleet, Yusuke Jikumaru, Eiji Nambara, Yuji Kamiya, Tai-Ping Sun
    posted to hormone chip by kengg on 2008-04-23 21:36:12 as ** along with 1 person bjbecerra
  • Direct Repression of KNOX Loci by the ASYMMETRIC LEAVES1 Complex of Arabidopsis
    Plant Cell (18 January 2008), tpc.107.056127.
    by Mengjuan Guo, Julie Thomas, Galen Collins, Marja C Timmermans
    posted to chip chromatin by kengg on 2008-03-07 20:51:44 as ** along with 2 people and 1 group bjbecerra p2vani Botany and Plant Sciences
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
    posted to chip chip-seq genome-wide by kengg on 2008-01-30 14:59:42 as ** along with 13 people and 1 group inesdesantiago jasonflannick jyuh brant dchughes vega vplagnol olympos epigenetics bioyang cabbagezs rschulz slevy03 EisenLab
  • Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters.
    Proc Natl Acad Sci U S A, Vol. 104, No. 12. (20 March 2007), pp. 4852-4857.
    by YS Kwon, I Garcia-Bassets, KR Hutt, CS Cheng, M Jin, D Liu, C Benner, D Wang, Z Ye, M Bibikova, JB Fan, L Duan, CK Glass, MG Rosenfeld, XD Fu
    posted to chip chip-chip by kengg on 2007-12-22 03:40:26 as ** along with 2 people inesdesantiago jfr
  • Circadian Regulator CLOCK Is a Histone Acetyltransferase
    Cell, Vol. 125, No. 3. (5 May 2006), pp. 497-508.
    by Masao Doi, Jun Hirayama, Paolo Sassone-Corsi
    posted to acetylation bhlh chip circadian histone nucleosome by kengg on 2007-11-09 20:44:46 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • The basic helix loop helix domain of maize R links transcriptional regulation and histone modifications by recruitment of an EMSY-related factor.
    Proc Natl Acad Sci U S A (15 October 2007)
    by J Marcela M Hernandez, Antje Feller, Kengo Morohashi, Kenneth Frame, Erich Grotewold
    posted to bhlh chip flavonoid maize tfs by kengg on 2007-10-23 21:35:05 as **
  • Participation of the Arabidopsis bHLH Factor GL3 in Trichome Initiation Regulatory Events.
    Plant Physiol (20 September 2007)
    by Kengo Morohashi, Mingzhe Zhao, Manli Yang, Betsy Read, Alan Lloyd, Rebecca Lamb, Erich Grotewold
    posted to bhlh chip network tfs trichome by kengg on 2007-10-23 21:33:52 as **
  • Arabidopsis Ovate Family Protein 1 is a transcriptional repressor that suppresses cell elongation
    The Plant Journal, Vol. 50, No. 5. (June 2007), pp. 858-872.
    by Wang, Shucai, Chang, Ying, Guo, Jianjun, Chen, Jin-Gui
    posted to arabidopsis chip by kengg on 2007-09-18 21:44:26 as ** along with 1 group Plantandetc
  • A Functional Link between Rhythmic Changes in Chromatin Structure and the Arabidopsis Biological Clock
    Plant Cell, Vol. 19, No. 7. (1 July 2007), pp. 2111-2123.
    by Mariano Perales, Paloma Mas
    posted to arabidopsis chip circadian by kengg on 2007-09-18 21:37:32 as ** along with 1 person and 1 group epigenetics Plantandetc
  • Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27
    The EMBO Journal, Vol. aop, No. current. (07 September 2006)
    by Daniel Schubert, Lucia Primavesi, Anthony Bishopp, Gethin Roberts, John Doonan, Thomas Jenuwein, Justin Goodrich
    posted to arabidopsis chip epigenetics histone by kengg on 2007-09-18 21:18:02 as ** along with 1 group Plantandetc
  • Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function.
    PLoS Comput Biol, Vol. 3, No. 4. (6 April 2007)
    by Yili Chen, Thomas W W Blackwell, Ji Chen, Jing Gao, Angel W W Lee, David J J States
    posted to bioinformatics chip network tfs by kengg on 2007-07-20 03:07:26 as ** along with 1 person and 2 groups zwang Bioinformatics Plantandetc
  • Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by PC Scacheri, S Davis, DT Odom, GE Crawford, S Perkins, MJ Halawi, SK Agarwal, SJ Marx, AM Spiegel, PS Meltzer, FS Collins
    posted to chip genome-wide tfs by kengg on 2007-07-18 09:10:08 as ** along with 1 group Plantandetc
  • Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets.
    Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2516-2522.
    by S Pyne, B Futcher, S Skiena
    posted to bioinformatics chip tfs by kengg on 2007-07-18 03:10:36 as ** along with 1 person and 1 group jfr Plantandetc
  • Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
    Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 385-390.
    by J Zeitlinger, RP Zinzen, A Stark, M Kellis, H Zhang, RA Young, M Levine
    posted to chip drosophila genome-wide network by kengg on 2007-07-18 02:53:50 as ** along with 6 people and 2 groups dpollard johncumbers gsrats ghattem jtomasch Stew EisenLab Plantandetc
  • A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by W Li, CA Meyer, XS Liu
    posted to bioinformatics chip tfs by kengg on 2007-07-17 03:18:48 as ** along with 1 group Plantandetc
  • Integrating quantitative information from ChIP-chip experiments into motif finding.
    Biostatistics (28 May 2007)
    by Heejung Shim, Sündüz Keles
    posted to bioinformatics chip tfs by kengg on 2007-07-17 03:14:25 as ** along with 3 people and 1 group kt nklee maximilianh Plantandetc
  • Normalization and experimental design for ChIP-chip data
    BMC Bioinformatics, Vol. 8 (25 June 2007), 219.
    by Shouyong Peng, Artyom A Alekseyenko, Erica Larschan, Mitzi I Kuroda, Peter J Park
    posted to bioinformatics chip by kengg on 2007-07-17 03:04:49 as ** along with 4 people and 2 groups caseybrown jyuh Stew yevishere EisenLab Plantandetc
  • Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27.
    PLoS Genet, Vol. 3, No. 6. (1 June 2007)
    by Franziska Turck, François Roudier, Sara Farrona, Marie-Laure L Martin-Magniette, Elodie Guillaume, Nicolas Buisine, Séverine Gagnot, Robert A A Martienssen, George Coupland, Vincent Colot
    posted to arabidopsis chip genome-wide by kengg on 2007-07-13 14:08:48 as ** along with 1 group Plantandetc
  • Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.
    Plant Cell, Vol. 19, No. 3. (March 2007), pp. 731-749.
    by J Lee, K He, V Stolc, H Lee, P Figueroa, Y Gao, W Tongprasit, H Zhao, I Lee, XW Deng
    posted to arabidopsis chip genome-wide by kengg on 2007-06-29 03:13:41 as ** along with 1 group Plantandetc
  • CTCF Interacts with and Recruits the Largest Subunit of RNA Polymerase II to CTCF Target Sites Genome-Wide
    Mol. Cell. Biol., Vol. 27, No. 5. (1 March 2007), pp. 1631-1648.
    by Igor Chernukhin, Shaharum Shamsuddin, Sung Y Kang, Rosita Bergstrom, Yoo-Wook Kwon, Wenqiang Yu, Joanne Whitehead, Rituparna Mukhopadhyay, France Docquier, Dawn Farrar, Ian Morrison, Marc Vigneron, Shwu-Yuan Wu, Cheng-Ming Chiang, Dmitri Loukinov, Victor Lobanenkov, Rolf Ohlsson, Elena Klenova
    posted to chip by kengg on 2007-06-06 20:35:19 as ** along with 2 people and 1 group sebastien_vigneau clearbluespring Plantandetc
  • Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae.
    PLoS Biol, Vol. 2, No. 9. (September 2004)
    by EF Glynn, PC Megee, HG Yu, C Mistrot, E Unal, DE Koshland, JL DeRisi, JL Gerton
    posted to bioinformatics chip chromatin genome-wide meiosis yeast by kengg on 2007-05-20 01:38:23 as ** along with 1 person and 1 group caseybrown Plantandetc
  • Genome-wide redistribution of meiotic double-strand breaks in Saccharomyces cerevisiae.
    Mol Cell Biol, Vol. 27, No. 5. (March 2007), pp. 1868-1880.
    by N Robine, N Uematsu, F Amiot, X Gidrol, E Barillot, A Nicolas, V Borde
    posted to chip chromatin genome-wide meiosis recombination yeast by kengg on 2007-05-20 01:33:03 as ** along with 1 group Plantandetc
  • Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis.
    PLoS Biol, Vol. 5, No. 5. (17 April 2007)
    by Xiaoyu Zhang, Oliver Clarenz, Shawn Cokus, Yana V V Bernatavichute, Matteo Pellegrini, Justin Goodrich, Steven E E Jacobsen
    posted to chip chromatin genome-wide by kengg on 2007-04-19 17:35:34 as ** along with 1 group Plantandetc
  • Activation of beta-major globin gene transcription is associated with recruitment of NF-E2 to the beta-globin LCR and gene promoter.
    Proc Natl Acad Sci U S A, Vol. 98, No. 18. (28 August 2001), pp. 10226-10231.
    by T Sawado, K Igarashi, M Groudine
    posted to chip chromatin by kengg on 2007-04-19 17:21:48 as ** along with 1 group Plantandetc
  • notes Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (4 February 2007)
    by Nathaniel D D Heintzman, Rhona K K Stuart, Gary Hon, Yutao Fu, Christina W W Ching, R David D Hawkins, Leah O O Barrera, Sara Van Calcar, Chunxu Qu, Keith A A Ching, Wei Wang, Zhiping Weng, Roland D D Green, Gregory E E Crawford, Bing Ren
    posted to chip chromatin genome-wide by kengg on 2007-04-19 16:56:49 as ** along with 7 people and 2 groups inesdesantiago djkt mgaldzic olympos skoch3 epigenetics caseybrown CHIP Plantandetc
  • Microarray Blob-Defect Removal Improves Array Analysis.
    Bioinformatics (1 March 2007)
    by Jun S S Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu
    posted to bioinformatics chip genome-wide by kengg on 2007-03-06 22:23:39 as ** along with 5 people and 1 group jfr shigepong ghattem caseybrown waszak Plantandetc
  • ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data.
    Genome Biol, Vol. 6, No. 11. (2005)
    by MJ Buck, AB Nobel, JD Lieb
    posted to bioinformatics chip genome-wid by kengg on 2007-02-25 00:26:34 as ** along with 1 group Plantandetc
  • Genome-wide analysis of chromatin status using tiling microarrays.
    Methods, Vol. 41, No. 3. (March 2007), pp. 304-311.
    by S Shivaswamy, VR Iyer
    posted to bioinformatics chip genome-wide by kengg on 2007-02-25 00:09:35 as ** along with 2 people and 1 group jyuh jfr Plantandetc
  • Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462.
    by WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
    posted to bioinformatics chip genome-wide by kengg on 2007-02-24 14:16:45 as ** along with 5 people and 1 group bozdagd bertelsen nicholso talponer caseybrown Plantandetc
  • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.
    Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509.
    by S Cawley, S Bekiranov, HH Ng, P Kapranov, EA Sekinger, D Kampa, A Piccolboni, V Sementchenko, J Cheng, AJ Williams, R Wheeler, B Wong, J Drenkow, M Yamanaka, S Patel, S Brubaker, H Tammana, G Helt, K Struhl, TR Gingeras
    posted to tfs network genome-wide chip bioinformatics by kengg on 2007-01-23 15:50:52 as ** along with 5 people and 1 group bertelsen brant evaf mtagaya olympos Plantandetc
  • Multiple testing methods for ChIP-Chip high density oligonucleotide array data.
    J Comput Biol, Vol. 13, No. 3. (April 2006), pp. 579-613.
    by S Keleş, MJ van der Laan, S Dudoit, SE Cawley
    posted to tfs network chip bioinformatics by kengg on 2007-01-23 15:44:05 as ** along with 1 group Plantandetc
  • A global map of p53 transcription-factor binding sites in the human genome.
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 207-219.
    by CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, Y Fu, Z Weng, J Liu, XD Zhao, JL Chew, YL Lee, VA Kuznetsov, WK Sung, LD Miller, B Lim, ET Liu, Q Yu, HH Ng, Y Ruan
    posted to genome-wide chip by kengg on 2007-01-18 21:16:45 as ** along with 10 people and 1 group bozdagd maralena kaarsinogen jfr balajis tabu vega jackjackjjj jtomasch karfunkel Plantandetc
  • Core transcriptional regulatory circuitry in human hepatocytes.
    Mol Syst Biol, Vol. 2 (2006)
    by DT Odom, RD Dowell, ES Jacobsen, L Nekludova, PA Rolfe, TW Danford, DK Gifford, E Fraenkel, GI Bell, RA Young
    posted to tfs network microarray chip by kengg on 2007-01-09 20:49:04 as ** along with 4 people and 1 group Schmidtc cconboy koller jdiggans Plantandetc
  • Linking DNA-binding proteins to their recognition sequences by using protein microarrays.
    Proc Natl Acad Sci U S A (19 June 2006)
    by Su-Wen W Ho, Ghil Jona, Christina T L T Chen, Mark Johnston, Michael Snyder
    posted to microarray chip by kengg on 2007-01-09 16:08:25 as ** along with 4 people and 3 groups emilyhare samal nickluscombe koller EisenLab EBI-regulation Plantandetc
  • Genome-wide map of nucleosome acetylation and methylation in yeast.
    Cell, Vol. 122, No. 4. (26 August 2005), pp. 517-527.
    by DK Pokholok, CT Harbison, S Levine, M Cole, NM Hannett, TI Lee, GW Bell, K Walker, PA Rolfe, E Herbolsheimer, J Zeitlinger, F Lewitter, DK Gifford, RA Young
    posted to nucleosome histone chromatin chip by kengg on 2007-01-09 14:30:09 as ** along with 4 people and 1 group nucleosome koller olympos redfish99213 Plantandetc
  • Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation.
    Curr Biol, Vol. 12, No. 16. (20 August 2002), pp. 1360-1367.
    by L Johnson, X Cao, S Jacobsen
    posted to arabidopsis chip epigenetics histone methylation by kengg on 2006-11-21 21:16:17 as ** along with 1 group Plantandetc
  • The bromodomain protein GTE6 controls leaf development in Arabidopsis by histone acetylation at ASYMMETRIC LEAVES1
    Genes Dev., Vol. 19, No. 18. (15 September 2005), pp. 2245-2254.
    by Yii L Chua, Stephanie Channeliere, Ellie Mott, John C Gray
    posted to arabidopsis chip tfs by kengg on 2006-10-09 15:17:27 as ** along with 1 person and 1 group braingrind Plantandetc
  • Identification of a Co-repressor That Inhibits the Transcriptional and Growth-Arrest Activities of CCAAT/Enhancer-binding Protein alpha
    J. Biol. Chem., Vol. 281, No. 26. (30 June 2006), pp. 18069-18080.
    by Pamela J Mcfie, Guo-Li Wang, Nicholai A Timchenko, Heather L Wilson, Xiaobin Hu, William J Roesler
    posted to chip chromatin tfs by kengg on 2006-10-02 22:26:17 as ** along with 1 group Plantandetc
  • Transcriptome network component analysis with limited microarray data.
    Bioinformatics (9 June 2006)
    by Simon J J Galbraith, Linh M M Tran, James C C Liao
    posted to bioinformatics chip tfs by kengg on 2006-09-25 14:44:23 as ** along with 3 people and 1 group mariakmejia snuppepuppan jyuh Plantandetc
  • The beta -globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation.
    Genes Dev, Vol. 17, No. 8. (2003), pp. 1009-1018.
    by T Sawado, J Halow, MA Bender, M Groudine
    posted to chip chromatin by kengg on 2006-09-16 15:37:54 as ** along with 1 group Plantandetc
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