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kengg bioinformatics [101 articles]

最近 kengg さんのライブラリに追加された論文の中から タグ bioinformatics. You can also see everyone's bioinformatics.
  • Genome wide analysis of Arabidopsis core promoters.
    BMC Genomics, Vol. 6, No. 1. (25 February 2005)
    by C Molina, E Grotewold
    posted to tbp taf bioinformatics by kengg on 2008-09-24 15:21:57 as ** along with 4 people and 1 group kaspermunch byy debasis dandaman Bioinformatics
  • Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis
    Plant Cell (2 September 2008), tpc.108.058040.
    by Keiko Yonekura-Sakakibara, Takayuki Tohge, Fumio Matsuda, Ryo Nakabayashi, Hiromitsu Takayama, Rie Niida, Akiko Watanabe-Takahashi, Eri Inoue, Kazuki Saito
    posted to metabolite coexpression bioinformatics by kengg on 2008-09-06 02:37:46 as **
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
    posted to bioinformatics coexpression network statics by kengg on 2008-08-23 23:08:15 as ** along with 12 people pengchy nolodie druvus aramesh2 roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
  • Modeling ChIP Sequencing In Silico with Applications
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000158.
    by Zhengdong D Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein
    posted to bioinformatics chip-seq statics by kengg on 2008-08-23 23:01:00 as ** along with 6 people inesdesantiago aramesh2 djkt Stew gdb caseybrown
  • An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.
    BMC systems biology, Vol. 2 (2008)
    by KE Thum, MJ Shin, RA Gutiérrez, I Mukherjee, MS Katari, D Nero, D Shasha, GM Coruzzi
    posted to bioinformatics systems by kengg on 2008-07-26 15:37:56 as ** along with 2 people lptolik Borelli
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to tfs network high-throughput genome-wide chip-seq chip bioinformatics by kengg on 2008-07-14 16:09:02 as ** along with 4 people jjray inesdesantiago caseybrown gdb
  • CressExpress: A tool for large-scale mining of expression data from Arabidopsis thaliana.
    Plant physiology (8 May 2008)
    by Vinodh Srinivasasainagendra, Grier Page, Tapan Mehta, Issa Coulibaly, Ann E E Loraine
    posted to bioinformatics coexpression by kengg on 2008-07-13 02:54:49 as ** along with 2 people imtechnology talponer
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to bioinformatics network by kengg on 2008-07-12 21:27:04 as ** along with 19 people and 2 groups jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Berkeley Mycology OPIG
  • Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes
    Plant Methods, Vol. 4, No. 1. (2008)
    by Andrew Dare, Robert Schaffer, Kui L Wang, Andrew Allan, Roger Hellens
    posted to arabidopsis bioinformatics flavonoid microarray myb tfs by kengg on 2008-07-07 01:35:25 as ** along with 1 person natstreet
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to bioinformatics coexpression network by kengg on 2008-05-30 16:02:56 as ** along with 37 people kubyaddi pbull gtgt15 Ema jago cmor balicea jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis jyuh craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to bioinformatics network review by kengg on 2008-05-30 15:59:29 as ** along with 54 people and 3 groups Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana laharrin sobolevnrm fryanpan rvosa dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo abbie_riner craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group FAB-lab Bioinformatics
  • Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks.
    BMC Genomics, Vol. 7 (2006)
    by MR Carlson, B Zhang, Z Fang, PS Mischel, S Horvath, SF Nelson
    posted to bioinformatics coexpression by kengg on 2008-05-24 03:19:51 as ** along with 2 people and 1 group jeremymiller xwbcn GeschwindLab
  • Gene co-expression network topology provides a framework for molecular characterization of cellular state
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2242-2250.
    by Scott L Carter, Christian M Brechbuhler, Michael Griffin, Andrew T Bond
    posted to bioinformatics coexpression by kengg on 2008-05-24 03:18:32 as ** along with 1 person nolodie
  • Cytoscape ESP: simple search of complex biological networks.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Maital Ashkenazi, Gary D D Bader, Allan Kuchinsky, Menachem Moshelion, David J J States
    posted to bioinformatics network systems by kengg on 2008-05-15 16:49:19 as ** along with 4 people jyuh maralena grahamc renatomilani
  • Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrej N Spiess, Caroline Feig, Christian Ritz
    posted to bioinformatics qpcr by kengg on 2008-04-30 21:55:13 as ** along with 4 people natstreet druvus mariakmejia jyuh
  • Annotating Genes of Known and Unknown Function by Large-Scale Coexpression Analysis
    Plant Physiol., Vol. 147, No. 1. (1 May 2008), pp. 41-57.
    by Kevin Horan, Charles Jang, Julia Bailey-Serres, Ron Mittler, Christian Shelton, Jeff F Harper, Jian-Kang Zhu, John C Cushman, Martin Gollery, Thomas Girke
    posted to bioinformatics coexpression by kengg on 2008-04-29 02:36:36 as ** along with 1 person jyuh
  • A Systems Biology Approach Identifies a R2R3 MYB Gene Subfamily with Distinct and Overlapping Functions in Regulation of Aliphatic Glucosinolates.
    PLoS ONE, Vol. 2, No. 12. (2007)
    by IE Sønderby, BG Hansen, N Bjarnholt, C Ticconi, BA Halkier, DJ Kliebenstein
    posted to arabidopsis bioinformatics myb systems by kengg on 2008-04-28 14:29:07 as **
  • Robustified MANOVA with applications in detecting differentially expressed genes from oligonucleotide arrays.
    Bioinformatics (3 March 2008)
    by Jin Xu, Xinping Cui
    posted to bioinformatics microarray by kengg on 2008-04-24 02:29:26 as ** along with 6 people jyuh shigepong chrys GeeSharpMinor bertelsen caseybrown
  • Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom
    posted to bioinformatics coexpression network tfs by kengg on 2008-04-24 01:35:28 as ** along with 8 people natstreet druvus heliopais robertvandenberg dquest bootsy bertelsen jyuh
  • Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants
    BMC Genomics, Vol. 9 (21 April 2008), 183.
    by Matthieu G Conte, Sylvain Gaillard, Gaetan Droc, Christophe Perin
    posted to bioinformatics comparative_genomics by kengg on 2008-04-24 01:27:16 as ** along with 3 people druvus natstreet dandaman
  • Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by Y Yamanishi, JP Vert, A Nakaya, M Kanehisa
    posted to bioinformatics coexpression network by kengg on 2008-04-17 15:51:29 as ** along with 1 person bioinfo
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to bioinformatics microarray network yeast by kengg on 2008-04-17 15:39:40 as ** along with 14 people and 2 groups adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 ruvido gcalda lpfernandes shikin hplatero csanford carlk kdl Bioinformatics
  • Gramene: a resource for comparative grass genomics.
    Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 103-105.
    by D Ware, P Jaiswal, J Ni, X Pan, K Chang, K Clark, L Teytelman, S Schmidt, W Zhao, S Cartinhour, S McCouch, L Stein
    posted to bioinformatics maize by kengg on 2008-04-17 15:16:17 as **
  • Current approaches to gene regulatory network modelling.
    BMC Bioinformatics, Vol. 8 Suppl 6 (2007)
    by T Schlitt, A Brazma
    posted to bioinformatics network review by kengg on 2008-04-01 20:51:55 as ** along with 4 people shigepong ramakris nicholasflann bertelsen
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to bioinformatics chip-c by kengg on 2008-03-20 21:20:04 as ** along with 11 people and 2 groups jfr djkt xiaobeizhao cabbagezs idonaldson caseybrown magusina lp2 stajich gracio gdb BergmanLab Berkeley Mycology
  • CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by S Gagnot, JP Tamby, ML Martin-Magniette, F Bitton, L Taconnat, S Balzergue, S Aubourg, JP Renou, A Lecharny, V Brunaud
    posted to bioinformatics by kengg on 2008-03-19 23:48:59 as **
  • Large-scale Cis-element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea.
    Plant Physiol (6 October 2006)
    by Georg Haberer, Michael T T Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus Fx F Mayer
    posted to bioinformatics brassica coexpression by kengg on 2008-03-12 17:39:49 as ** along with 4 people and 1 group dpollard xwbcn nklee xili03 EisenLab
  • Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana
    Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1060-1067.
    by Elizabeth J Williams, Dianna J Bowles
    posted to arabidopsis bioinformatics coexpression by kengg on 2008-03-12 17:19:33 as ** along with 2 people JeffR100 olympos
  • Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins.
    PLoS Genet, Vol. 3, No. 10. (October 2007), pp. 1848-1861.
    by MW Jones-Rhoades, JO Borevitz, D Preuss
    posted to bioinformatics coexpression meiosis network by kengg on 2008-03-08 04:20:15 as **
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to bioinformatics hint network tfs by kengg on 2008-03-07 19:20:12 as ** along with 8 people and 2 groups balicea zwang biomcgary cisevol caseybrown renatomilani mclarenv Jporci cis-regulatory-evolution BergmanLab
  • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Lukas Burger, Erik van Nimwegen
    posted to bioinformatics hint tool by kengg on 2008-03-07 19:13:50 as ** along with 10 people grahamc laughcry zwang biomcgary cabbagezs roys cdeane gjuggler phoenixzxl pansapiens
  • Computing topological parameters of biological networks.
    Bioinformatics (15 November 2007)
    by Yassen Assenov, Fidel Ramírez, Sven-Eric E Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to bioinformatics coexpression by kengg on 2008-02-03 03:33:15 as ** along with 5 people jyuh jfr grahamc mclarenv frohike
  • Topological and functional discovery in a gene coexpression meta-network of gastric cancer.
    Cancer Res, Vol. 66, No. 1. (1 January 2006), pp. 232-241.
    by A Aggarwal, DL Guo, Y Hoshida, ST Yuen, KM Chu, S So, A Boussioutas, X Chen, D Bowtell, H Aburatani, SY Leung, P Tan
    posted to bioinformatics coexpression systems by kengg on 2008-02-03 03:21:47 as ** along with 1 person jfr
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to bioinformatics coexpression network systems by kengg on 2008-02-03 02:58:04 as ** along with 18 people and 2 groups winterschlaefer isimpson ihpark bertelsen jfr frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Bioinformatics GeneGo
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to bioinformatics network systems tfs by kengg on 2008-01-20 01:27:55 as ** along with 14 people and 2 groups Retchless tmmurali austin dpollard balicea dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch EisenLab SynBioSys
  • Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1340-1353.
    by Julia A Chekanova, Brian D Gregory, Sergei V Reverdatto, Huaming Chen, Ravi Kumar, Tanya Hooker, Junshi Yazaki, Pinghua Li, Nikolai Skiba, Qian Peng, Jose Alonso, Vladimir Brukhin, Ueli Grossniklaus, Joseph R Ecker, Dmitry A Belostotsky
    posted to bioinformatics network by kengg on 2008-01-17 21:56:17 as **
  • Transcriptional coordination of the metabolic network in Arabidopsis.
    Plant Physiol, Vol. 142, No. 2. (October 2006), pp. 762-774.
    by H Wei, S Persson, T Mehta, V Srinivasasainagendra, L Chen, GP Page, C Somerville, A Loraine
    posted to bioinformatics metabolite network by kengg on 2008-01-17 21:40:48 as **
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-17 21:30:09 as ** along with 5 people and 1 group pengchy jfr grahamc natstreet kaihsyn Bioinformatics
  • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R
    Bioinformatics (16 November 2007), btm563.
    by Peter Langfelder, Bin Zhang, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 22:12:33 as **
  • A general framework for weighted gene co-expression network analysis.
    Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005)
    by B Zhang, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:52 as ** along with 4 people and 1 group pengchy jeremymiller natstreet jo_davies GeschwindLab
  • Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight.
    PLoS Genet, Vol. 2, No. 8. (18 August 2006)
    by Anatole Ghazalpour, Sudheer Doss, Bin Zhang, Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E E Schadt, Thomas A A Drake, Aldons J J Lusis, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:34 as ** along with 6 people and 1 group Maelys koller giovanni jeremymiller natstreet jo_davies GeschwindLab
  • Network neighborhood analysis with the multi-node topological overlap measure.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 222-231.
    by A Li, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:05 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    PNAS, Vol. 103, No. 47. (21 November 2006), pp. 17973-17978.
    by Michael C Oldham, Steve Horvath, Daniel H Geschwind
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:51:21 as ** along with 8 people and 2 groups pengchy balicea adepace EsepBib jeremymiller cckan nosada17 giovanni EisenLab GeschwindLab
  • Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e47.
    by Zhihua Zhang, Changning Liu, Geir Skogerbø, Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu, Runsheng Chen
    posted to bioinformatics network tfs by kengg on 2007-12-25 03:42:43 as ** along with 2 people ccots aswin
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
    posted to bioinformatics network by kengg on 2007-12-25 03:17:46 as ** along with 6 people Yanno axelon ryanraaum heliopais mingzhi Ema
  • Meta-Analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e208.
    by Kevin P Keegan, Suraj Pradhan, Ji-Ping Wang, Ravi Allada
    posted to bioinformatics circadian drosophila microarray network by kengg on 2007-11-29 22:14:56 as **
  • Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues
    PNAS, Vol. 102, No. 24. (14 June 2005), pp. 8621-8626.
    by T Mijalski, A Harder, T Halder, M Kersten, M Horsch, TM Strom, HV Liebscher, F Lottspeich, Hrabe M de Angelis, J Beckers
    posted to bioinformatics microarray network by kengg on 2007-11-21 03:45:56 as ** along with 1 person JeffR100
  • ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by T Obayashi, K Kinoshita, K Nakai, M Shibaoka, S Hayashi, M Saeki, D Shibata, K Saito, H Ohta
    posted to bioinformatics microarray network by kengg on 2007-11-21 03:26:44 as **
  • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.
    FEBS Lett, Vol. 573, No. 1-3. (27 August 2004), pp. 83-92.
    by R Breitling, P Armengaud, A Amtmann, P Herzyk
    posted to bioinformatics microarray statics by kengg on 2007-11-06 21:40:43 as ** along with 3 people schuylrp bakakaj 0004573p
  • Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 807-817.
    by VX Jin, H O'geen, S Iyengar, R Green, PJ Farnham
    posted to bioinformatics genome-wide tfs by kengg on 2007-07-28 10:19:54 as ** along with 3 people and 1 group cjeans ghattem kmdaily Plantandetc
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/kengg/tag/bioinformatics

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