ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data.

@article{citeulike:2782593, abstract = {ProfCom is a web-based tool for the functional interpretation of a gene list that was identified to be related by experiments. A trait which makes ProfCom a unique tool is an ability to profile enrichments of not only available Gene Ontology (GO) terms but also of 'complex functions'. A 'Complex function' is constructed as Boolean combination of available GO terms. The complex functions inferred by ProfCom are more specific in comparison to single terms and describe more accurately the functional role of genes. ProfCom provides a user friendly dialog-driven web page submission available for several model organisms and supports most available gene identifiers. In addition, the web service interface allows the submission of any kind of annotation data. ProfCom is freely available at http://webclu.bio.wzw.tum.de/profcom/.}, address = {Helmholtz Zentrum Munich, National Research Center for Environment and Health, Institute for Bioinformatics, Ingolst\"{a}dter Landstra{\ss}e 1, D-85764 Neuherberg and Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universit\"{a}t M\"{u}nchen, 85350 Freising, Germany.}, author = {Antonov, Alexey V V. and Schmidt, Thorsten and Wang, Yu and Mewes, Hans W W. }, citeulike-article-id = {2782593}, issn = {1362-4962}, journal = {Nucleic acids research}, month = {May}, posted-at = {2008-05-10 09:54:27}, priority = {2}, title = {ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/18460543}, year = {2008} }

TY - JOUR ID - citeulike:2782593 TI - ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. JF - Nucleic acids research AD - Helmholtz Zentrum Munich, National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstraße 1, D-85764 Neuherberg and Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, 85350 Freising, Germany. SN - 1362-4962 N2 - ProfCom is a web-based tool for the functional interpretation of a gene list that was identified to be related by experiments. A trait which makes ProfCom a unique tool is an ability to profile enrichments of not only available Gene Ontology (GO) terms but also of 'complex functions'. A 'Complex function' is constructed as Boolean combination of available GO terms. The complex functions inferred by ProfCom are more specific in comparison to single terms and describe more accurately the functional role of genes. ProfCom provides a user friendly dialog-driven web page submission available for several model organisms and supports most available gene identifiers. In addition, the web service interface allows the submission of any kind of annotation data. ProfCom is freely available at http://webclu.bio.wzw.tum.de/profcom/. AU - Antonov, Alexey V AU - Schmidt, Thorsten AU - Wang, Yu AU - Mewes, Hans W PY - 2008/05/06/ UR - http://view.ncbi.nlm.nih.gov/pubmed/18460543 ER -