Prophet, a web-based tool for class prediction using microarray data.

by: Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo

Bioinformatics (30 November 2006)

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Abstract

Sample classification and class prediction is the aim of many gene expression studies. We present a web-based application, Prophet, that builds prediction rules and allows using them for further sample classification. Prophet automatically chooses the best classifier, along with the optimal selection of genes, using a strategy that renders unbiased cross-validated errors. Prophet is linked to different microarray data analysis modules, and includes a unique feature: the possibility of performing the functional interpretation of the molecular signature found. AVAILABILITY: Prophet can be found at the URL http://prophet.bioinfo.cipf.es/ or within the GEPAS package at http://www.gepas.org.

@article{citeulike:1005973, abstract = {Sample classification and class prediction is the aim of many gene expression studies. We present a web-based application, Prophet, that builds prediction rules and allows using them for further sample classification. Prophet automatically chooses the best classifier, along with the optimal selection of genes, using a strategy that renders unbiased cross-validated errors. Prophet is linked to different microarray data analysis modules, and includes a unique feature: the possibility of performing the functional interpretation of the molecular signature found. AVAILABILITY: Prophet can be found at the URL http://prophet.bioinfo.cipf.es/ or within the GEPAS package at http://www.gepas.org.}, address = {Department of Bioinformatics, Centro de Investigaci\'{o}n Pr\'{i}ncipe Felipe (CIPF), Valencia, E46013, Spain.}, author = {Medina, Ignacio and Montaner, David and T\'{a}rraga, Joaqu\'{i}n and Dopazo, Joaqu\'{i}n }, citeulike-article-id = {1005973}, issn = {1460-2059}, journal = {Bioinformatics}, month = {November}, posted-at = {2007-09-13 16:22:08}, priority = {2}, title = {Prophet, a web-based tool for class prediction using microarray data.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/17138587}, year = {2006} }

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TY - JOUR ID - citeulike:1005973 L3 - citeulike-article-id:1005973 TI - Prophet, a web-based tool for class prediction using microarray data. JF - Bioinformatics AD - Department of Bioinformatics, Centro de Investigación Príncipe Felipe (CIPF), Valencia, E46013, Spain. SN - 1460-2059 N2 - Sample classification and class prediction is the aim of many gene expression studies. We present a web-based application, Prophet, that builds prediction rules and allows using them for further sample classification. Prophet automatically chooses the best classifier, along with the optimal selection of genes, using a strategy that renders unbiased cross-validated errors. Prophet is linked to different microarray data analysis modules, and includes a unique feature: the possibility of performing the functional interpretation of the molecular signature found. AVAILABILITY: Prophet can be found at the URL http://prophet.bioinfo.cipf.es/ or within the GEPAS package at http://www.gepas.org. AU - Medina, Ignacio AU - Montaner, David AU - Tárraga, Joaquín AU - Dopazo, Joaquín PY - 2006/11/30/ UR - http://view.ncbi.nlm.nih.gov/pubmed/17138587 ER -

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