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jwm library [1385 articles]

最近 jwm さんのライブラリ .
  • Converting a maltose receptor into a nascent binuclear copper oxygenase by computational design.
    Biochemistry, Vol. 41, No. 9. (5 March 2002), pp. 3262-3269.
    by DE Benson, AE Haddy, HW Hellinga
    posted to protein_design by jwm on 2008-04-27 15:26:14 as **
  • Rational design of nascent metalloenzymes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 12. (6 June 2000), pp. 6292-6297.
    by DE Benson, MS Wisz, HW Hellinga
    posted to protein_design by jwm on 2008-04-27 15:25:48 as **
  • X-ray crystallographic and biochemical characterizations of a mutant photosystem II complex from Thermosynechococcus vulcanus with the psbTc gene inactivated by an insertion mutation
    Journal of Synchrotron Radiation
    by Takahiro Henmi
    posted to psii_crystallization psii by jwm on 2008-04-23 17:15:10 as **
  • Improved R-factors for diffraction data analysis in macromolecular crystallography.
    Nature structural biology, Vol. 4, No. 4. (April 1997), pp. 269-275.
    posted to protein_structure_validation xtal_software by jwm on 2008-04-21 14:06:47 as **
  • Generation of reactive oxygen species upon strong visible light irradiation of isolated phycobilisomes from Synechocystis PCC 6803.
    Biochimica et biophysica acta (6 March 2008)
    by Sara Rinalducci, Jens Z Z Pedersen, Lello Zolla
    posted to phycobilisome by jwm on 2008-04-18 14:20:03 as **
  • Evolution and unique bioenergetic mechanisms in oxygenic photosynthesis.
    Current opinion in chemical biology, Vol. 10, No. 2. (April 2006), pp. 91-100.
    by TM Iverson
    posted to psii psii_review by jwm on 2008-04-18 09:15:09 as **
  • (IUCr) CHAINSAW: a program for mutating pdb files used as templates in molecular replacement
    Journal of Applied Crystallography
    by N Stein
    posted to molecular_replacement by jwm on 2008-04-16 15:22:24 as **
  • Is the mu-Oxo-mu-Peroxodiiron Intermediate of a Ribonucleotide Reductase Biomimetic a Possible Oxidant of Epoxidation Reactions?
    Chemistry (Weinheim an der Bergstrasse, Germany) (2 April 2008)
    by Sam P P de Visser
    posted to ribonucleotide_reductase by jwm on 2008-04-16 13:02:06 as **
  • Modeling of variant copies of subunit D1 in the structure of photosystem II from Thermosynechococcus elongatus.
    Biological chemistry (6 March 2008)
    by Bernhard Loll, Matthias Broser, Peter B B Kós, Jan Kern, Jacek Biesiadka, Imre Vass, Wolfram Saenger, Athina Zouni
    posted to psba psii by jwm on 2008-04-16 10:39:59 as **
  • Differential regulation of psbA and psbD gene expression, and the role of the different D1 protein copies in the cyanobacterium Thermosynechococcus elongatus BP-1.
    Biochimica et biophysica acta, Vol. 1777, No. 1. (January 2008), pp. 74-83.
    by PB Kós, Z Deák, O Cheregi, I Vass
    posted to psba psii by jwm on 2008-04-16 09:57:08 as **
  • A molecular viewer for the analysis of TLS rigid-body motion in macromolecules
    Acta Crystallographica Section D Biological Crystallography
    by P& Painter
    posted to structural_bioinformatics by jwm on 2008-04-15 12:57:30 as **
  • Electronic Design Criteria for O−O Bond Formation via Metal−Oxo Complexes
    Inorg. Chem., Vol. 47, No. 6. (17 March 2008), pp. 1849-1861.
    by Theodore A Betley, Qin Wu, Troy Van Voorhis, Daniel G Nocera
    posted to artificial_photosynthesis by jwm on 2008-04-13 11:54:27 as **
  • The evolution of the ribonucleotide reductases: much ado about oxygen.
    Journal of molecular evolution, Vol. 55, No. 2. (August 2002), pp. 180-196.
    by AM Poole, DT Logan, BM Sjöberg
    posted to ribonucleotide_reductase by jwm on 2008-04-13 11:25:40 as **
  • Ribonucleotide reductase. A virtual playground for electron transfer reactions.
    Sub-cellular biochemistry, Vol. 35 (2000), pp. 405-443.
    by M Sahlin, BM Sjöberg
    posted to ribonucleotide_reductase by jwm on 2008-04-13 11:13:00 as **
  • A computer vision based technique for 3-D sequence-independent structural comparison of proteins.
    Protein engineering, Vol. 6, No. 3. (April 1993), pp. 279-288.
    posted to geometric_hashing protein_design by jwm on 2008-04-11 18:34:35 as **
  • The integration of macromolecular diffraction data
    Acta Crystallographica Section D: Biological Crystallography, Vol. 62, No. 1. (01 January 2006), pp. 48-57.
    by Leslie,
    posted to data_processing by jwm on 2008-04-08 13:37:57 as **
  • Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution
    Journal of Molecular Biology, Vol. 279, No. 5. (26 June 1998), pp. 1211-1227.
    by Robert B Russell
    posted to protein_design by jwm on 2008-04-08 10:31:31 as ** along with 2 people shadowman Evangelia
  • Metal search: a computer program that helps design tetrahedral metal-binding sites.
    Proteins, Vol. 23, No. 2. (October 1995), pp. 256-263.
    by ND Clarke, SM Yuan
    posted to protein_design by jwm on 2008-04-08 10:30:25 as **
  • De Novo Computational Design of Retro-Aldol Enzymes
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391.
    by Lin Jiang, Eric A Althoff, Fernando R Clemente, Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L Gallaher, Jamie L Betker, Fujie Tanaka, Carlos F Barbas, Donald Hilvert, Kendall N Houk, Barry L Stoddard, David Baker
  • Kemp elimination catalysts by computational enzyme design
    Nature (19 March 2008)
    by Daniela Röthlisberger, Olga Khersonsky, Andrew M Wollacott, Lin Jiang, Jason Dechancie, Jamie Betker, Jasmine L Gallaher, Eric A Althoff, Alexandre Zanghellini, Orly Dym, Shira Albeck, Kendall N Houk, Dan S Tawfik, David Baker
    posted to protein_design rosetta by jwm on 2008-04-07 13:37:16 as ** along with 3 people neils cactus msuarezdiez
  • Functional organization of a plant Photosystem I: Evolution of a highly efficient photochemical machine.
    Plant physiology and biochemistry : PPB / Société française de physiologie végétale, Vol. 46, No. 3. (March 2008), pp. 228-237.
    by A Amunts, N Nelson
    posted to psi by jwm on 2008-04-03 10:47:35 as **
  • Long-Range Electron Transfer Special Feature: Long-range electron transfer
    Proceedings of the National Academy of Sciences, Vol. 102, No. 10. (8 March 2005), pp. 3534-3539.
    by Harry B Gray, Jay R Winkler
    posted to electron_tunneling by jwm on 2008-03-31 17:40:15 as ** along with 1 person neitneit815
  • Proton-coupled electron transfer: a unifying mechanism for biological charge transport, amino acid radical initiation and propagation, and bond making/breaking reactions of water and oxygen.
    Biochim Biophys Acta, Vol. 1655, No. 1-3. (12 April 2004), pp. 13-28.
    by CJ Chang, MC Chang, NH Damrauer, DG Nocera
    posted to ribonucleotide_reductase by jwm on 2008-03-31 17:39:24 as **
  • Proton-coupled electron transfer.
    Annu Rev Phys Chem, Vol. 49 (1998), pp. 337-369.
    by RI Cukier, DG Nocera
    posted to protein_coupled_electron_transfer by jwm on 2008-03-31 17:38:49 as **
  • Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids
    Protein Sci, Vol. 16, No. 10. (1 October 2007), pp. 2224-2232.
    by Mark Sales, Joseph J Plecs, James M Holton, Tom Alber
    posted to protein_denovo_design by jwm on 2008-03-20 13:29:10 as ** along with 1 person chgjb
  • Modelling and refining site-specific radiation damage in SAD/MAD phasing
    Journal of Synchrotron Radiation
    posted to experimental_phasing radiation_damage by jwm on 2008-03-19 14:42:07 as **
  • Automated structure solution with autoSHARP.
    Methods Mol Biol, Vol. 364 (2007), pp. 215-230.
    posted to experimental_phasing xtal_software by jwm on 2008-03-19 14:41:50 as **
  • A quantitative approach to data-collection strategies
    Acta Crystallographica Section D: Biological Crystallography, Vol. 62, No. 1. (01 January 2006), pp. 58-64.
    posted to data_collection radiation_damage by jwm on 2008-03-19 14:32:19 as **
  • Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination
    Acta Crystallographica Section D Biological Crystallography
    posted to metal_site_identification xtal_methods by jwm on 2008-03-19 11:39:21 as **
  • Searching for silver bullets: an alternative strategy for crystallizing macromolecules.
    J Struct Biol, Vol. 156, No. 3. (December 2006), pp. 387-406.
    posted to crystallization crystallization_additives by jwm on 2008-03-17 16:09:37 as **
  • Development of an alternative approach to protein crystallization.
    J Struct Funct Genomics (24 November 2007)
    by Alexander McPherson, Chieniang Nguyen, Steven B Larson, John S Day, Bob Cudney
    posted to crystallization crystallization_additives by jwm on 2008-03-17 16:09:02 as **
  • On the molecular-replacement problem in the presence of merohedral twinning: structure of the N-terminal half-molecule of human lactoferrin.
    Acta Crystallogr D Biol Crystallogr, Vol. 55, No. Pt 1. (January 1999), pp. 129-138.
    by WA Breyer, RL Kingston, BF Anderson, EN Baker
    posted to molecular_replacement xtal_twinning by jwm on 2008-03-17 11:08:33 as **
  • BALBES: a molecular-replacement pipeline
    Acta Crystallographica Section D Biological Crystallography
    by Long
    posted to molecular_replacement by jwm on 2008-03-11 13:09:39 as **
  • Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA.
    J Mol Biol, Vol. 373, No. 1. (12 October 2007), pp. 112-126.
    posted to stressosome by jwm on 2008-03-07 14:34:56 as **
  • Transformations to optimize the superposition of similar structures
    Acta Crystallographica Section A, Vol. 35, No. 1. (Jan 1979), pp. 158-163.
    posted to structural_alignment structural_bioinformatics by jwm on 2008-03-04 09:58:36 as **
  • Reversible sequestration of active site cysteines in a 2Fe-2S-bridged dimer provides a mechanism for glutaredoxin 2 regulation in human mitochondria.
    J Biol Chem, Vol. 282, No. 5. (2 February 2007), pp. 3077-3082.
    posted to fes_cluster sgc by jwm on 2008-02-21 10:48:20 as **
  • Sequence alignment for molecular replacement
    Acta Crystallographica Section D Biological Crystallography
  • Extending the limits of molecular replacement through combined simulated annealing and maximum-likelihood refinement.
    Acta Crystallogr D Biol Crystallogr, Vol. 55, No. Pt 1. (January 1999), pp. 181-190.
    by PD Adams, NS Pannu, RJ Read, AT Brunger
    posted to molecular_replacement xtal_methods by jwm on 2008-02-20 10:25:54 as **
  • Version 1.2 of the Crystallography and NMR system.
    Nat Protoc, Vol. 2, No. 11. (2007), pp. 2728-2733.
    by AT Brunger
    posted to xtal_methods xtal_software by jwm on 2008-01-25 12:12:24 as **
  • mtz2sca and mtz2hkl: facilitated transition from CCP4 to the SHELX program suite
    Journal of Applied Crystallography, Vol. 41 (2008), pp. 217-218.
    by Tim Grune
    posted to xtal_methods xtal_software by jwm on 2008-01-18 14:15:54 as **
  • Stereochemistry of polypeptide chain configurations.
    J Mol Biol, Vol. 7 (July 1963), pp. 95-99.
  • Phycobilisome-reaction centre interaction in cyanobacteria
    Photosynthesis Research, Vol. 95, No. 2. (3 February 2008), pp. 175-182.
    by Conrad Mullineaux
    posted to phycobilisome by jwm on 2008-01-10 16:40:38 as **
  • Structure and organization of phycobilisomes on membranes of the red alga Porphyridium cruentum
    Photosynthesis Research, Vol. 95, No. 2. (3 February 2008), pp. 169-174.
    by Ana Arteni, Lu-Ning Liu, Thijs Aartsma, Yu-Zhong Zhang, Bai-Cheng Zhou, Egbert Boekema
    posted to phycobilisome phycobilisome_structure by jwm on 2008-01-10 16:29:05 as **
  • Understanding the Structural Basis for Substrate and Inhibitor Recognition in Eukaryotic GH11 Xylanases.
    J Mol Biol (12 November 2007)
    by Maria Vardakou, Claire Dumon, James W W Murray, Paul Christakopoulos, David P P Weiner, Nathalie Juge, Richard J J Lewis, Harry J J Gilbert, James E E Flint
    posted to jwm_author xylanase by jwm on 2008-01-07 14:15:07 as **
  • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny.
    Comput Appl Biosci, Vol. 12, No. 6. (December 1996), pp. 543-548.
    by N Galtier, M Gouy, C Gautier
    posted to bioinformatics sequence_alignment by jwm on 2007-12-17 16:55:35 as **
  • A 3-Hydroxypropionate/4-Hydroxybutyrate Autotrophic Carbon Dioxide Assimilation Pathway in Archaea
    Science, Vol. 318, No. 5857. (14 December 2007), pp. 1782-1786.
    by Ivan A Berg, Daniel Kockelkorn, Wolfgang Buckel, Georg Fuchs
  • Observation of decreased radiation damage at higher dose rates in room temperature protein crystallography.
    Structure, Vol. 15, No. 12. (December 2007), pp. 1531-1541.
    posted to radiation_damage by jwm on 2007-12-13 11:16:32 as **
  • MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by IW Davis, A Leaver-Fay, VB Chen, JN Block, GJ Kapral, X Wang, LW Murray, WB Arendall, J Snoeyink, JS Richardson, DC Richardson
  • The scientific impact of the Structural Genomics Consortium: a protein family and ligand-centered approach to medically-relevant human proteins.
    J Struct Funct Genomics (12 October 2007)
    by Opher Gileadi, Stefan Knapp, Wen H Lee, Brian D Marsden, Susanne Müller, Frank H Niesen, Kathryn L Kavanagh, Linda J Ball, Frank von Delft, Declan A Doyle, Udo C Oppermann, Michael Sundström
    posted to sgc structural_genomics by jwm on 2007-12-10 12:47:51 as **
  • Do the higher oxidation states of the photosynthetic O2-evolving system contain bound H2O?
    FEBS Lett, Vol. 195, No. 1-2. (January 1986), pp. 285-289.
    posted to oec protein_channels psii by jwm on 2007-12-08 12:16:27 as **
  • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/jwm

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