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jonathanjacobs library [55 articles]

最近 jonathanjacobs さんのライブラリ .
  • RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts
    Nat. Protocols, Vol. 1, No. 1. (June 2006), pp. 302-307.
    by Jack D Keene, Jordan M Komisarow, Matthew B Friedersdorf
    posted to affinity genomics rna rnp by jonathanjacobs on 2008-08-29 00:49:33 as **
  • Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers.
    RNA, Vol. 13, No. 4. (April 2007), pp. 614-622.
  • The La antigen shuttles between the nucleus and the cytoplasm in CV-1 cells.
    Molecular and cellular biochemistry, Vol. 85, No. 2. (21 February 1989), pp. 103-114.
    posted to cytoplasm la nucleus shuttling by jonathanjacobs on 2008-08-26 02:30:04 as **
  • RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction
    RNA, Vol. 11, No. 10. (October 2005), pp. 1579-1587.
    by AK Dubey, CS Baker, T Romeo, P Babitzke
    posted to protocol rna selex structure by jonathanjacobs on 2008-08-26 02:23:23 as read
  • Differential Phosphorylation and Subcellular Localization of La RNPs Associated with Precursor tRNAs and Translation-Related mRNAs
    Molecular Cell, Vol. 12, No. 5. (November 2003), pp. 1301-1307.
    by Robert V Intine, Scott A Tenenbaum, Amy L Sakulich, Jack D Keene, Richard J Maraia
    posted to la localization phosphoprotein rnp translation by jonathanjacobs on 2008-08-26 02:15:47 as read
  • The myosin motor, Myo4p, binds Ash1 mRNA via the adapter protein, She3p
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 10. (May 2000), pp. 5273-5278.
    by Peter A Takizawa, Ronald D Vale
    posted to ash1 localization mrna myo4 protocol rna she3 by jonathanjacobs on 2008-08-26 02:12:32 as read
  • Two Yeast La Motif-containing Proteins Are RNA-binding Proteins that Associate with Polyribosomes
    Mol. Biol. Cell, Vol. 10, No. 11. (1 November 1999), pp. 3849-3862.
    by Suzanne G Sobel, Sandra L Wolin
    posted to la lhp1 ribosome rna slf1p sro9p translation by jonathanjacobs on 2008-08-26 02:10:28 as read
  • Libraries for genomic SELEX
    Nucl. Acids Res., Vol. 25, No. 4. (15 February 1997), pp. 781-786.
    by BS Singer, T Shtatland, D Brown, L Gold
    posted to rna selex by jonathanjacobs on 2008-08-26 01:57:47 as read along with 1 group Molecular Biology
  • Trading translation with RNA-binding proteins
    RNA, Vol. 14, No. 3. (March 2008), pp. 404-409.
    by I Abaza, F Gebauer
  • Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 13. (19 June 2001), pp. 7018-7024.
    by Jack D Keene
  • RNA regulons: coordination of post-transcriptional events
    Nature Reviews Genetics, Vol. 8, No. 7., pp. 533-543.
    by Jack D Keene
  • Size, constant sequences, and optimal selection
    RNA, Vol. 11, No. 11. (1 November 2005), pp. 1701-1709.
    by Michal Legiewicz, Catherine Lozupone, ROB Knight, Michael Yarus
  • PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Ashton Belew, Nicholaus Hepler, Jonathan Jacobs, Jonathan Dinman
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
  • Diversity of Oligonucleotide Functions
    Annual Review of Biochemistry, Vol. 64, No. 1. (1995), pp. 763-797.
    by L Gold, B Polisky, O Uhlenbeck, M Yarus
    posted to dna ligands oligonucleotide protein rna selex structure by jonathanjacobs on 2008-06-23 16:20:18 as **
  • THE LA PROTEIN
    Annual Review of Biochemistry, Vol. 71, No. 1. (2002), pp. 375-403.
    by Sandra L Wolin, Tommy Cedervall
  • In vitro selection of RNA molecules that bind specific ligands
    Nature, Vol. 346, No. 6287. (1990), pp. 818-822.
    by Andrew D Ellington, Jack W Szostak
    posted to evolution ligand rna selex sequence by jonathanjacobs on 2008-06-16 15:20:06 as read
  • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.
    Science, Vol. 249, No. 4968. (3 August 1990), pp. 505-510.
    by C Tuerk, L Gold
  • RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction
    RNA, Vol. 11, No. 10. (1 October 2005), pp. 1579-1587.
    by Ashok K Dubey, Carol S Baker, TONY Romeo, PAUL Babitzke
  • Identification of RNA ligands that bind hepatitis C virus polymerase selectively and inhibit its RNA synthesis from the natural viral RNA templates
    Virology, Vol. 307, No. 2. (15 March 2003), pp. 301-316.
    by Nam V Vo, Jong-Won Oh, Michael M Lai
  • SELEX--a (r)evolutionary method to generate high-affinity nucleic acid ligands.
    Biomol Eng, Vol. 24, No. 4. (October 2007), pp. 381-403.
  • Genomic systematic evolution of ligands by exponential enrichment (Genomic SELEX) for the identification of protein-binding RNAs independent of their expression levels
    Nat. Protocols, Vol. 1, No. 5. (December 2006), pp. 2204-2212.
    by Christina Lorenz, Frederike von Pelchrzim, Renee Schroeder
  • High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e96.
    by Kevin A Wilkinson, Robert J Gorelick, Suzy M Vasa, Nicolas Guex, Alan Rein, David H Mathews, Morgan C Giddings, Kevin M Weeks
  • Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3′ Untranslated Region
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e92.
    by Andrea B Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Z Orozco, Oliver Mühlemann
  • Identification of novel posttranscriptional targets of the BCR/ABL oncoprotein by ribonomics: requirement of E2F3 for BCR/ABL leukemogenesis
    Blood, Vol. 111, No. 2. (15 January 2008), pp. 816-828.
    by Anna M Eiring, Paolo Neviani, Ramasamy Santhanam, Joshua J Oaks, Ji S Chang, Mario Notari, William Willis, Carlo Gambacorti-Passerini, Stefano Volinia, Guido Marcucci, Michael A Caligiuri, Gustavo W Leone, Danilo Perrotti
  • The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
    FEBS Journal, Vol. 272, No. 9. (2005), pp. 2118-2131.
    by Christophe Maris, Cyril Dominguez, Frederic HT Allain
  • Downregulation of the essential Trypanosoma brucei La protein affects accumulation of elongator methionyl-tRNA
    Molecular and Biochemical Parasitology, Vol. 144, No. 1. (November 2005), pp. 104-108.
    by George K Arhin, Shuiyuan Shen, Iehsus F Perez, Christian Tschudi, Elisabetta Ullu
  • The Trypanosoma brucei La protein is a candidate poly(U) shield that impacts spliced leader RNA maturation and tRNA intron removal
    International Journal for Parasitology, Vol. 35, No. 4. (1 April 2005), pp. 359-366.
    by Silvie Foldynova-Trantirkova, Zdenek Paris, Nancy R Sturm, David A Campbell, Julius Lukes
  • Genetic analysis of a La homolog in Drosophila melanogaster
    Nucl. Acids Res., Vol. 28, No. 5. (1 March 2000), pp. 1078-1084.
    by Chunyang Bai, Peter P Tolias
  • A bona fide La protein is required for embryogenesis in Arabidopsis thaliana
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3306-3321.
    by Sophie Fleurdepine, Jean-Marc Deragon, Martine Devic, Jocelyne Guilleminot, Cecile Bousquet-Antonelli
  • Following translation by single ribosomes one codon at a time
    Nature (09 March 2008)
    by Jin-Der Wen, Laura Lancaster, Courtney Hodges, Ana-Carolina Zeri, Shige H Yoshimura, Harry F Noller, Carlos Bustamante, Ignacio Tinoco
  • Cap-Independent Translation Is Required for Starvation-Induced Differentiation in Yeast
    Science, Vol. 317, No. 5842. (31 August 2007), pp. 1224-1227.
    by Wendy V Gilbert, Kaihong Zhou, Tamira K Butler, Jennifer A Doudna
  • The multifunctional RNA-binding protein La is required for mouse development and for the establishment of embryonic stem cells.
    Mol Cell Biol, Vol. 26, No. 4. (February 2006), pp. 1445-1451.
    by JM Park, MJ Kohn, MW Bruinsma, C Vech, RV Intine, S Fuhrmann, A Grinberg, I Mukherjee, PE Love, MS Ko, ML DePamphilis, RJ Maraia
  • A La-Related Protein Modulates 7SK snRNP Integrity to Suppress P-TEFb-Dependent Transcriptional Elongation and Tumorigenesis
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 588-599.
    by Nanhai He, Nadine S Jahchan, Eunmee Hong, Qiang Li, Mark A Bayfield, Richard J Maraia, Kunxin Luo, Qiang Zhou
  • Novel CNBP- and La-based translation control systems for mammalian cells.
    Biotechnol Bioeng, Vol. 81, No. 1. (5 January 2003), pp. 1-12.
  • Was the initiation of translation in early eukaryotes IRES-driven?
    Trends in Biochemical Sciences, Vol. 33, No. 2. (February 2008), pp. 58-64.
    by Greco Hernandez
  • Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs
    Proceedings of the National Academy of Sciences, Vol. 101, No. 2. (13 January 2004), pp. 434-439.
    by Maki Inada, Christine Guthrie
  • Proteomic analysis of reaper 5' untranslated region-interacting factors isolated by tobramycin affinity-selection reveals a role for La antigen in reaper mRNA translation
    PROTEOMICS, Vol. 5, No. 6. (2005), pp. 1645-1655.
    by Paula Vazquez-Pianzola, Henning Urlaub, Rolando Rivera-Pomar
    posted to la rna translation utr by jonathanjacobs on 2008-03-31 16:31:55 as read along with 1 group The La Autoantigen.
  • RACK1 mRNA translation is regulated via a rapamycin-sensitive pathway and coordinated with ribosomal protein synthesis
    FEBS Letters, Vol. 579, No. 25. (24 October 2005), pp. 5517-5520.
    by Fabrizio Loreni, Valentina Iadevaia, Elisa Tino, Sara Caldarola, Francesco Amaldi
    posted to mrna ribosome top translation by jonathanjacobs on 2008-03-31 16:28:40 as ***
  • Identification of secondary structure in the 5′-untranslated region of the human adrenomedullin mRNA with implications for the regulation of mRNA translation
    Oncogene, Vol. aop, No. current.
    posted to mrna protein rna structure translation utr by jonathanjacobs on 2008-03-31 16:27:23 as **
  • La protein has a positive effect on the translation of TOP mRNAs in vivo
    Nucl. Acids Res., Vol. 28, No. 15. (1 August 2000), pp. 2927-2934.
    by Claudia Crosio, Pietro P Boyl, Fabrizio Loreni, Paola Pierandrei-Amaldi, Francesco Amaldi
  • RNA Interference-Mediated Silencing of the Polo-like Kinase 1 Gene Enhances Chemosensitivity to Gemcitabine in Pancreatic Adenocarcinoma Cells
    Journal of Cellular and Molecular Medicine, Vol. 0, No. ja. (0)
    by YU Chunzhao, Xinhua Zhang, SUN Gu, GUO Xirong, LI Huabing, YOU Yongping, Kevin Gardner, YUAN Depei, XU Zekuan, DU Qing, DAI Cengcai, QIAN Zhuyin, Kuirong Jiang, ZHU Yi, Jonathan L Jacobs, Qingdi Q Li, MIAO Yi
    posted to apoptosis biology cancer genes protein rna rnai by jonathanjacobs on 2008-03-28 05:16:42 as read
  • Transcriptional Networks Inferred from Molecular Signatures of Breast Cancer
    Am J Pathol, Vol. 172, No. 2. (1 February 2008), pp. 495-509.
    by Ron Tongbai, Gila Idelman, Silje H Nordgard, Wenwu Cui, Jonathan L Jacobs, Cynthia M Haggerty, Stephen J Chanock, Anne-Lise Borresen-Dale, Gary Livingston, Patrick Shaunessy, Chih-Hung Chiang, Vessela N Kristensen, Sven Bilke, Kevin Gardner
  • A Three-Stemmed mRNA Pseudoknot in the SARS Coronavirus Frameshift Signal
    PLoS Biology, Vol. 3, No. 6. (1 June 2005), e172.
    by Ewan P Plant, Gabriela C Pérez-Alvarado, Jonathan L Jacobs, Bani Mukhopadhyay, Mirko Hennig, Jonathan D Dinman
  • Identification of functional, endogenous programmed 1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 165-174.
  • A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element
    Nucl. Acids Res., Vol. 32, No. 2. (3 February 2004), pp. 784-790.
    by Ewan P Plant, Pinger Wang, Jonathan L Jacobs, Jonathan D Dinman
  • The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting.
    RNA, Vol. 9, No. 2. (February 2003), pp. 168-174.
    by EP Plant, KL Jacobs, JW Harger, A Meskauskas, JL Jacobs, JL Baxter, AN Petrov, JD Dinman
  • Recognition of Nascent RNA by the Human La Antigen: Conserved and Divergent Features of Structure and Function
    Mol. Cell. Biol., Vol. 21, No. 2. (15 January 2001), pp. 367-379.
    by Richard J Maraia, Robert V Intine
  • Ribosomal Protein S25 mRNA Partners with MTF-1 and La to Provide a p53-mediated Mechanism for Survival or Death
    J. Biol. Chem., Vol. 277, No. 6. (1 February 2002), pp. 4147-4151.
    by Tadepalli Adilakshmi, Roney O Laine
  • BCR/ABL activates mdm2 mRNA translation via the La antigen
    Cancer Cell, Vol. 3, No. 2. (February 2003), pp. 145-160.
    by Rossana Trotta, Tatiana Vignudelli, Olivia Candini, Robert V Intine, Luisa Pecorari, Clara Guerzoni, Giorgia Santilli, Mike W Byrom, Silvia