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jlh64 no-tag [121 articles]

最近 jlh64 さんのライブラリに追加された論文の中から タグ no-tag. You can also see everyone's no-tag.
  • Distribution Analysis of the Variation of B-Factors of X-ray Crystal Structures: Temperature and Structural Variations in Lysozyme
    J. Chem. Inf. Comput. Sci., Vol. 37, No. 6. (24 November 1997), pp. 1171-1180.
    by JE Wampler
    posted to no-tag by jlh64 on 2008-06-02 17:34:24 as **
  • Sequence-similar, structure-dissimilar protein pairs in the PDB.
    Proteins, Vol. 71, No. 2. (1 May 2008), pp. 891-902.
    by M Kosloff, R Kolodny
    posted to no-tag by jlh64 on 2008-06-02 16:26:38 as **
  • Deriving protein dynamical properties from weighted protein contact number.
    Proteins (25 February 2008)
    by Chih-Peng P Lin, Shao-Wei W Huang, Yan-Long L Lai, Shih-Chung C Yen, Chien-Hua H Shih, Chih-Hao H Lu, Cuen-Chao C Huang, Jenn-Kang K Hwang
    posted to no-tag by jlh64 on 2008-06-02 10:59:27 as **
  • Structure of calmodulin bound to the hydrophobic IQ domain of the cardiac Ca(v)1.2 calcium channel.
    Structure, Vol. 13, No. 12. (December 2005), pp. 1881-1886.
    by JL Fallon, DB Halling, SL Hamilton, FA Quiocho
    posted to no-tag by jlh64 on 2008-03-20 14:36:10 as **
  • Structure of calmodulin complexed with an olfactory CNG channelfragment and role of the central linker: Residual dipolar couplingsto evaluate calmodulin binding modes outside the kinase family
    Journal of Biomolecular NMR, Vol. 31, No. 3. (March 2005), pp. 185-199.
    by Gian Contessa, Maria Orsale, Sonia Melino, Vincent Torre, Maurizio Paci, Alessandro Desideri, Daniel Cicero
    posted to no-tag by jlh64 on 2008-03-20 14:34:04 as **
  • Structural basis for simultaneous binding of two carboxy-terminal peptides of plant glutamate decarboxylase to calmodulin.
    J Mol Biol, Vol. 328, No. 1. (18 April 2003), pp. 193-204.
    by KL Yap, T Yuan, TK Mal, HJ Vogel, M Ikura
    posted to no-tag by jlh64 on 2008-03-20 14:32:23 as **
  • Structure of the Complex of Calmodulin with the Target Sequence of Calmodulin-Dependent Protein Kinase I: Studies of the Kinase Activation Mechanism
    Biochemistry, Vol. 41, No. 50. (17 December 2002), pp. 14669-14679.
    by JA Clapperton, SR Martin, SJ Smerdon, SJ Gamblin, PM Bayley
    posted to no-tag by jlh64 on 2008-03-20 14:25:26 as **
  • Physiological calcium concentrations regulate calmodulin binding and catalysis of adenylyl cyclase exotoxins.
    EMBO J, Vol. 21, No. 24. (16 December 2002), pp. 6721-6732.
    by Y Shen, YS Lee, S Soelaiman, P Bergson, D Lu, A Chen, K Beckingham, Z Grabarek, M Mrksich, WJ Tang
    posted to no-tag by jlh64 on 2008-03-20 14:23:34 as **
  • Target-induced conformational adaptation of calmodulin revealed by the crystal structure of a complex with nematode Ca2+/calmodulin-dependent kinase kinase peptide
    pp. 59-68.
    by H Kurokawa
    posted to no-tag by jlh64 on 2008-03-20 14:21:16 as **
  • Structure of the gating domain of a Ca2+-activated K+ channel complexed with Ca2+/calmodulin
    Nature, Vol. 410, No. 6832. (26 April 2001), pp. 1120-1124.
    by Maria A Schumacher, Andre F Rivard, Hans P Bachinger, John P Adelman
    posted to no-tag by jlh64 on 2008-03-20 14:18:26 as **
  • Motions of calmodulin characterized using both Bragg and diffuse X-ray scattering
    Structure, Vol. 5, No. 12. (15 December 1997), pp. 1599-1612.
    by Michael E Wall, James B Clarage, George N Phillips
    posted to no-tag by jlh64 on 2008-03-20 14:16:42 as **
  • A novel target recognition revealed by calmodulin in complex with Ca2+-calmodulin-dependent kinase kinase
    Nat Struct Mol Biol, Vol. 6, No. 9. (1999), pp. 819-824.
    by Masanori Osawa, Hiroshi Tokumitsu, Mark B Swindells, Hiroyuki Kurihara, Masaya Orita, Tadao Shibanuma, Toshio Furuya, Mitsuhiko Ikura
    posted to no-tag by jlh64 on 2008-03-20 14:14:30 as **
  • NMR Solution Structure of a Complex of Calmodulin with a Binding Peptide of the Ca2+ Pump
    Biochemistry, Vol. 38, No. 38. (21 September 1999), pp. 12320-12332.
    by B Elshorst, M Hennig, H Forsterling, A Diener, M Maurer, P Schulte, H Schwalbe, C Griesinger, J Krebs, H Schmid, T Vorherr, E Carafoli
    posted to no-tag by jlh64 on 2008-03-20 14:12:53 as **
  • On the importance of a funneled energy landscape for the assembly and regulation of multidomain Src tyrosine kinases.
    Proc Natl Acad Sci U S A, Vol. 104, No. 34. (21 August 2007), pp. 13643-13648.
    by JD Faraldo-Gómez, B Roux
    posted to no-tag by jlh64 on 2008-03-20 13:52:40 as **
  • The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by LH Greene, TE Lewis, S Addou, A Cuff, T Dallman, M Dibley, O Redfern, F Pearl, R Nambudiry, A Reid, I Sillitoe, C Yeats, JM Thornton, CA Orengo
    posted to no-tag by jlh64 on 2008-03-20 13:42:34 as ** along with 2 people tjimenez chad_davis
  • Mechanism of Calmodulin Recognition of the Binding Domain of Isoform 1b of the Plasma Membrane Ca2+-ATPase: Kinetic Pathway and Effects of Methionine Oxidation
    Biochemistry, Vol. 46, No. 13. (3 April 2007), pp. 4045-4054.
    by BD Slaughter, RJ Bieberurbauer, JL Urbauer, CK Johnson
    posted to no-tag by jlh64 on 2008-03-20 13:14:49 as **
  • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    Journal of Molecular Biology, Vol. 247, No. 4. (7 April 1995), pp. 536-540.
    by Alexey G Murzin, Steven E Brenner, Tim Hubbard, Cyrus Chothia
    posted to no-tag by jlh64 on 2008-03-19 20:26:27 as **
  • Flexibility of [alpha]-Helices: Results of a Statistical Analysis of Database Protein Structures
    Journal of Molecular Biology, Vol. 327, No. 1. (14 March 2003), pp. 229-237.
    by Eldon G Emberly, Ranjan Mukhopadhyay, Ned S Wingreen, Chao Tang
    posted to no-tag by jlh64 on 2008-03-19 20:25:55 as **
  • Haemoglobin: the structural changes related to ligand binding and its allosteric mechanism.
    J Mol Biol, Vol. 129, No. 2. (5 April 1979), pp. 175-220.
    by J Baldwin, C Chothia
    posted to no-tag by jlh64 on 2008-03-19 16:52:20 as **
  • Simultaneous determination of protein structure and dynamics
    Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132.
    by Kresten Lindorff-Larsen, Robert B Best, Mark A Depristo, Christopher M Dobson, Michele Vendruscolo
    posted to no-tag by jlh64 on 2008-03-19 16:34:05 as ** along with 12 people and 2 groups rph karbak apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana biehl structural_bioinformatics Bioinformatics
  • Calcium-induced conformational transition revealed by the solution structure of apo calmodulin
    Nat Struct Mol Biol, Vol. 2, No. 9. (1995), pp. 758-767.
    by Mingjie Zhang, Toshiyuki Tanaka, Mitsuhiko Ikura
    posted to no-tag by jlh64 on 2008-03-19 10:38:40 as **
  • Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism
    Proceedings of the National Academy of Sciences (13 November 2007), 0706443104.
    by Karunesh Arora, Charles L Brooks
    posted to no-tag by jlh64 on 2008-03-19 07:54:13 as ** along with 5 people and 2 groups barry allmensch cactus sobolevnrm karunesh structural_bioinformatics baker-group
  • Antibody evolution constrains conformational heterogeneity by tailoring protein dynamics
    PNAS, Vol. 103, No. 37. (12 September 2006), pp. 13722-13727.
    by Jorg Zimmermann, Erin L Oakman, Ian F Thorpe, Xinghua Shi, Paul Abbyad, Charles L Brooks, Steven G Boxer, Floyd E Romesberg
    posted to no-tag by jlh64 on 2008-03-19 07:53:04 as ** along with 1 person jlfst77
  • The role of dynamics in allosteric regulation.
    Curr Opin Struct Biol, Vol. 13, No. 6. (December 2003), pp. 748-757.
    by D Kern, ER Zuiderweg
    posted to no-tag by jlh64 on 2008-03-19 07:44:17 as ** along with 1 person lna
  • Conformational diversity and protein evolution - a 60-year-old hypothesis revisited
    pp. 361-368.
    by LC James
    posted to no-tag by jlh64 on 2008-03-19 06:06:18 as **
  • Relation between native ensembles and experimental structures of proteins
    Proceedings of the National Academy of Sciences, Vol. 103, No. 29. (18 July 2006), pp. 10901-10906.
    by Robert B Best, Kresten Lindorff-Larsen, Mark A Depristo, Michele Vendruscolo
    posted to no-tag by jlh64 on 2008-03-18 19:15:57 as **
  • Structural flexibility in proteins: impact of the crystal environment
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 521-528.
    by Konrad Hinsen
    posted to no-tag by jlh64 on 2008-03-18 17:51:18 as ** along with 3 people and 2 groups barry sobolevnrm scienbox McCammon baker-group
  • General Framework for Studying the Dynamics of Folded and Nonfolded Proteins by NMR Relaxation Spectroscopy and MD Simulation
    J. Am. Chem. Soc., Vol. 124, No. 16. (24 April 2002), pp. 4522-4534.
    by JJ Prompers, R Bruschweiler
    posted to no-tag by jlh64 on 2008-03-18 15:11:11 as **
  • Molecular dynamics simulations revealed Ca2+-dependent conformational change of Calmodulin
    FEBS Letters, Vol. 521, No. 1-3. (19 June 2002), pp. 133-139.
    by Yuto Komeiji, Yutaka Ueno, Masami Uebayasi
    posted to no-tag by jlh64 on 2008-03-18 15:09:05 as **
  • How does averaging affect protein structure comparison on the ensemble level?
    Biophys J, Vol. 87, No. 4. (October 2004), pp. 2240-2246.
    by B Zagrovic, VS Pande
    posted to no-tag by jlh64 on 2008-03-18 15:06:54 as ** along with 1 person apaydin
  • Unwinding the helical linker of calcium-loaded calmodulin: A molecular dynamics study
    Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (2005), pp. 829-839.
    by G Fiorin, RR Biekofsky, A Pastore, P Carloni
    posted to no-tag by jlh64 on 2008-03-18 11:39:48 as **
  • Structure of calmodulin refined at 2.2 A resolution.
    J Mol Biol, Vol. 204, No. 1. (5 November 1988), pp. 191-204.
    by YS Babu, CE Bugg, WJ Cook
    posted to no-tag by jlh64 on 2008-03-18 11:04:19 as **
  • On the prediction of protein structure: The significance of the root-mean-square deviation.
    J Mol Biol, Vol. 138, No. 2. (April 1980), pp. 321-333.
    by FE Cohen, MJ Sternberg
    posted to no-tag by jlh64 on 2008-03-17 13:08:46 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Rapid and sensitive sequence comparison with FASTP and FASTA.
    Methods Enzymol, Vol. 183 (1990), pp. 63-98.
    by WR Pearson
    posted to no-tag by jlh64 on 2008-03-16 18:13:26 as ** along with 4 people granujilla jmeppley arcticrasta treangen
  • Protein Folds: A Distance-Based Approach
    (20 October 1995)
    by Henrik Bohr, Soren Brunak
    posted to no-tag by jlh64 on 2008-03-16 12:14:00 as **
  • The theory and practice of distance geometry
    Bulletin of Mathematical Biology, Vol. 45, No. 5. (1983), pp. 665-720.
    by Timothy Havel, Irwin Kuntz, Gordon Crippen
    posted to no-tag by jlh64 on 2008-03-15 21:33:10 as ** along with 1 person mijam
  • Seeking significance in three-dimensional protein structure comparisons
    pp. 377-382.
    by K Mizuguchi
    posted to no-tag by jlh64 on 2008-03-14 14:42:46 as **
  • Protein structure similarities
    Current Opinion in Structural Biology, Vol. 11, No. 3. (1 June 2001), pp. 348-353.
    by Patrice Koehl
    posted to no-tag by jlh64 on 2008-03-14 14:38:30 as ** along with 1 person conkymacro
  • Testing similarity measures with continuous and discrete protein models
    Proteins: Structure, Function, and Genetics, Vol. 50, No. 1. (2003), pp. 144-157.
    by Stefan Wallin, Jochen Farwer, Ugo Bastolla
    posted to no-tag by jlh64 on 2008-03-14 14:33:34 as **
  • On the relationship between the protein structure and protein dynamics
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Chih-Hao Lu, Shao-Wei Huang, Yan-Long Lai, Chih-Peng Lin, Chien-Hua Shih, Cuen-Chao Huang, Wei-Lun Hsu, Jenn-Kang Hwang
    posted to no-tag by jlh64 on 2008-03-13 21:46:16 as **
  • From The Cover: Experimentally exploring the conformational space sampled by domain reorientation in calmodulin
    Proceedings of the National Academy of Sciences, Vol. 101, No. 18. (4 May 2004), pp. 6841-6846.
    by Ivano Bertini, Cristina Del Bianco, Ioannis Gelis, Nikolaus Katsaros, Claudio Luchinat, Giacomo Parigi, Massimiliano Peana, Alessandro Provenzani, Maria A Zoroddu
    posted to no-tag by jlh64 on 2008-03-13 21:39:35 as **
  • Basic interdomain boundary residues in calmodulin decrease calcium affinity of sites I and II by stabilizing helix-helix interactions
    Proteins: Structure, Function, and Genetics, Vol. 50, No. 3. (2003), pp. 381-391.
    by Laurel A Faga, Brenda R Sorensen, Wendy S Vanscyoc, Madeline A Shea
    posted to no-tag by jlh64 on 2008-03-13 21:38:05 as **
  • Structure and dynamics of calcium-activated calmodulin in solution.
    J Biomol Struct Dyn, Vol. 19, No. 2. (October 2001), pp. 247-271.
    by C Yang, GS Jas, K Kuczera
    posted to no-tag by jlh64 on 2008-03-13 21:36:53 as **
  • Functional Dynamics of the Hydrophobic Cleft in the N-Domain of Calmodulin
    Biophys. J., Vol. 80, No. 5. (1 May 2001), pp. 2082-2092.
    by Dominico Vigil, Stephen C Gallagher, Jill Trewhella, Angel E Garcia
    posted to no-tag by jlh64 on 2008-03-13 21:30:48 as **
  • Calcium-Dependent Structural Coupling between Opposing Globular Domains of Calmodulin Involves the Central Helix
    Biochemistry, Vol. 38, No. 38. (21 September 1999), pp. 12266-12279.
    by H Sun, D Yin, TC Squier
    posted to no-tag by jlh64 on 2008-03-13 21:25:33 as **
  • Mutation of Tyr138 Disrupts the Structural Coupling between the Opposing Domains in Vertebrate Calmodulin
    Biochemistry, Vol. 40, No. 32. (14 August 2001), pp. 9605-9617.
    by H Sun, D Yin, LA Coffeen, MA Shea, TC Squier
    posted to no-tag by jlh64 on 2008-03-13 21:21:39 as **
  • Calcium-Dependent Stabilization of the Central Sequence Between Met76 and Ser81 in Vertebrate Calmodulin
    Biophys. J., Vol. 81, No. 5. (1 November 2001), pp. 2908-2918.
    by Zhihai Qin, Thomas C Squier
    posted to no-tag by jlh64 on 2008-03-13 21:04:00 as **
  • Dynamics of Ca2+-saturated calmodulin D129N mutant studied by multiple molecular dynamics simulations
    Protein Sci, Vol. 12, No. 10. (1 October 2003), pp. 2215-2229.
    by Vladimir A Likic, Emanuel E Strehler, Paul R Gooley
    posted to no-tag by jlh64 on 2008-03-13 21:02:45 as **
  • A Molecular Dynamics Study of Ca2+-Calmodulin: Evidence of Interdomain Coupling and Structural Collapse on the Nanosecond Timescale
    Biophys. J., Vol. 87, No. 2. (1 August 2004), pp. 780-791.
    by Craig M Shepherd, Hans J Vogel
    posted to no-tag by jlh64 on 2008-03-13 20:59:31 as **
  • Electrostatic control of the overall shape of calmodulin: numerical calculations
    European Biophysics Journal, Vol. 36, No. 3. (March 2007), pp. 225-237.
    by Isvoran, , Craescu, , Alexov,
    posted to no-tag by jlh64 on 2008-03-13 20:56:55 as **
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