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jfr low_level [42 articles]

最近 jfr さんのライブラリに追加された論文の中から タグ low_level. You can also see everyone's low_level.
  • A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
    BMC Bioinformatics, Vol. 9 (14 April 2008), 194.
    by Huanying Ge, Chao Cheng, Lei M Li
    posted to normalization low_level affy by jfr on 2008-06-17 17:25:42 as **
  • Understanding the physics of oligonucleotide microarrays: the Affymetrix spike-in data reanalysed.
    Physical biology, Vol. 5, No. 1. (2008)
    by CJ Burden
    posted to low_level affy by jfr on 2008-05-16 10:27:30 as **
  • Normalization of oligonucleotide arrays based on the least-variant set of genes
    BMC Bioinformatics, Vol. 9 (05 March 2008), 140.
    by Stefano Calza, Davide Valentini, Yudi Pawitan
    posted to software normalization low_level gene_expression affy by jfr on 2008-05-05 10:58:52 as ** along with 3 people jyuh giovenko waszak
  • Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction
    Nucl. Acids Res., Vol. 36, No. 7. (1 April 2008), pp. 2395-2405.
    by Hinanit Koltai, Carmiya Weingarten-Baror
    posted to microarray_technology low_level by jfr on 2008-04-30 15:44:25 as ** along with 2 people ptrobajo jyuh
  • AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip(TM) expression arrays with respect to SNPs
    BMC Bioinformatics, Vol. 8 (30 July 2007), 276.
    by Sunita Kumari, Lalit K Verma, Jennifer W Weller
    posted to affy low_level methodology software by jfr on 2008-02-13 13:45:39 as **
  • A comparison of background correctionm ethods for two-colour microarrays.
    Bioinformatics (25 August 2007)
    by Matthew E E Ritchie, Jeremy Silver, Alicia Oshlack, Melissa Holmes, Dileepa Diyagama, Andrew Holloway, Gordon K K Smyth
    posted to low_level normalization two-color by jfr on 2008-02-05 11:39:32 as ** along with 5 people debasis caseybrown jyuh shigepong GeeSharpMinor
  • Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays
    Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2566-2572.
    by Chunlei Wu, Haitao Zhao, Keith Baggerly, Roberto Carta, Li Zhang
    posted to affy low_level by jfr on 2008-02-04 11:50:29 as * along with 1 person niallhaslam
  • CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1700-1701.
    by H Zhao, K Engelen, B De Moor, K Marchal
    posted to bioconductor low_level software two-color by jfr on 2008-01-24 17:19:04 as * along with 1 person jyuh
  • Analysis of probe level patterns in Affymetrix microarray data
    BMC Bioinformatics, Vol. 8 (04 May 2007), 146.
    by Alexander C Cambon, Abdelnaby Khalyfa, Nigel GF Cooper, Caryn M Thompson
    posted to affy annotation low_level by jfr on 2008-01-24 17:16:35 as ** along with 3 people bertelsen ghattem niallhaslam
  • Stratification bias in low signal microarray studies
    BMC Bioinformatics, Vol. 8 (02 September 2007), 326.
    by Brian J Parker, Simon Gunter, Justin Bedo
    posted to low_level by jfr on 2007-12-06 10:44:57 as ** along with 1 person shigepong
  • arrayQCplot: software for checking the quality of microarray data.
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2305-2307.
    by EK Lee, SG Yi, T Park
    posted to low_level quality_control software by jfr on 2007-12-05 10:35:09 as *
  • Estimation and correction of non-specific binding in a large-scale spike-in experiment
    Genome Biology, Vol. 8 (26 June 2007), R126.
    by Eugene F Schuster, Eric Blanc, Linda Partridge, Janet Thornton
    posted to affy low_level by jfr on 2007-12-05 10:24:09 as **
  • Correcting for sequence biases in present/absent calls
    Genome Biology, Vol. 8 (26 June 2007), R125.
    by Eugene F Schuster, Eric Blanc, Linda Partridge, Janet Thornton
    posted to affy low_level by jfr on 2007-12-05 10:21:45 as **
  • The utility of MAS5 expression summary and detection call algorithms
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Stuart Pepper, Emma Saunders, Laura Edwards, Claire Wilson, Crispin Miller
    posted to affy low_level normalization by jfr on 2007-12-04 15:22:25 as ** along with 3 people ryanraaum wirawan waszak
  • Autocorrelation analysis reveals widespread spatial biases in microarray experiments
    BMC Genomics, Vol. 8 (12 June 2007), 164.
    by Amnon Koren, Itay Tirosh, Naama Barkai
    posted to low_level by jfr on 2007-12-03 10:56:59 as **
  • Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
    BMC Bioinformatics, Vol. 8 (11 June 2007), 195.
    by Andrew P Harrison, Caroline E Johnston, Christine A Orengo
    posted to affy low_level by jfr on 2007-11-28 13:21:17 as ** along with 1 person heliopais
  • Pre-processing Agilent microarray data
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Marianna Zahurak, Giovanni Parmigiani, Wayne Yu, Robert Scharpf, David Berman, Edward Schaeffer, Shabana Shabbeer, Leslie Cope
    posted to agilent low_level by jfr on 2007-11-26 18:13:20 as * along with 3 people bertelsen jhatrimatri shigepong
  • The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.
    BMC Bioinformatics, Vol. 7 (2006)
    by RG Verhaak, FJ Staal, PJ Valk, B Lowenberg, MJ Reinders, D de Ridder
    posted to affy evaluation low_level by jfr on 2007-11-23 15:31:50 as * along with 3 people frohike RMGraze ghattem
  • chip artifact CORRECTion (caCORRECT): a bioinformatics system for quality assurance of genomics and proteomics array data.
    Ann Biomed Eng, Vol. 35, No. 6. (June 2007), pp. 1068-1080.
    by TH Stokes, RA Moffitt, JH Phan, MD Wang
    posted to affy low_level quality_control by jfr on 2007-09-13 14:46:42 as ****
  • Microarray Blob-Defect Removal Improves Array Analysis.
    Bioinformatics (1 March 2007)
    by Jun S S Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu
    posted to affy low_level microarray_technology by jfr on 2007-07-31 17:12:32 as ** along with 5 people and 1 group kengg shigepong ghattem caseybrown waszak Plantandetc
  • How high is the level of technical noise in microarray data?
    Biology Direct, Vol. 2 (11 April 2007), 9.
    by Lev Klebanov, Andrei Yakovlev
    posted to affy low_level by jfr on 2007-07-10 11:36:56 as * along with 2 people ghattem heliopais
  • Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data
    BMC Bioinformatics, Vol. 8 (25 January 2007), 26.
    by Andy G Lynch, David E Neal, John D Kelly, Glyn J Burtt, Natalie P Thorne
    posted to low_level microarray_technology two-color by jfr on 2007-05-14 14:13:00 as * along with 1 person shigepong
  • PQN and DQN: algorithms for expression microarrays.
    J Theor Biol, Vol. 243, No. 2. (21 November 2006), pp. 273-278.
    by WM Liu, R Li, JZ Sun, J Wang, J Tsai, W Wen, A Kohlmann, PM Williams
    posted to affy low_level methodology by jfr on 2007-05-11 14:43:09 as *
  • Exploration, Normalization, and Genotype Calls of High Density Oligonucleotide SNP Array Data.
    Biostatistics (22 December 2006)
    by Benilton Carvalho, Henrik Bengtsson, Terence P P Speed, Rafael A A Irizarry
    posted to genotyping low_level methodology snp_arrays by jfr on 2007-01-16 18:06:34 as read along with 1 person jyuh
  • When should one subtract background fluorescence in two color microarrays?
    Biostatistics (12 December 2006)
    by Robert B B Scharpf, Christine A A Iacobuzio-Donahue, Julie B B Sneddon, Giovanni Parmigiani
    posted to two-color low_level by jfr on 2007-01-12 16:48:00 as ** along with 3 people rdiaz shigepong ugengma
  • Robust estimators for expression analysis.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1585-1592.
    by E Hubbell, WM Liu, R Mei
    posted to methodology low_level affy by jfr on 2007-01-11 13:55:03 as * along with 1 person wirawan
  • Feature-level exploration of a published Affymetrix GeneChip control dataset
    Genome Biology, Vol. 7 (01 September 2006), 404.
    by Rafael A Irizarry, Leslie M Cope, Zhijin Wu
    posted to normalization low_level affy by jfr on 2007-01-10 15:46:49 as ** along with 1 person ghattem
  • Probe set algorithms: Is there a rational best bet?
    BMC Bioinformatics, Vol. 7 (30 August 2006), 395.
    by Jinwook Seo, Eric P Hoffman
    posted to low_level evaluation affy by jfr on 2007-01-10 15:41:02 as * along with 4 people shikin bertelsen ghattem rschulz
  • Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data.
    Proc Natl Acad Sci U S A, Vol. 103, No. 37. (12 September 2006), pp. 13629-13634.
    by LA Marcelino, V Backman, A Donaldson, C Steadman, JR Thompson, SP Preheim, C Lien, E Lim, D Veneziano, MF Polz
    posted to microarray_technology low_level affy by jfr on 2007-01-10 13:11:15 as *
  • A reanalysis of a published Affymetrix GeneChip control dataset.
    Genome Biol, Vol. 7, No. 3. (22 March 2006)
    by Alan R Dabney, John D Storey
    posted to low_level affy by jfr on 2007-01-10 10:08:29 as * along with 2 people lhonigberg ghattem
  • Evaluation of methods for oligonucleotide array data via quantitative real-time PCR.
    BMC Bioinformatics, Vol. 7 (2006)
    by LX Qin, RP Beyer, FN Hudson, NJ Linford, DE Morris, KF Kerr
    posted to affy low_level normalization by jfr on 2007-01-09 13:48:41 as ** along with 1 person ghattem
  • Centering, scaling, and transformations: improving the biological information content of metabolomics data
    BMC Genomics, Vol. 7 (08 June 2006), 142.
    by Robert A van den Berg, Huub CJ Hoefsloot, Johan A Westerhuis, Age K Smilde, Mariet J van der Werf
    posted to low_level mass_spec by jfr on 2007-01-09 11:44:54 as * along with 1 person jyuh
  • A model of technical variation of microarray signals.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 996-1003.
    by E Chudin, S Kruglyak, SC Baker, S Oeser, D Barker, TK McDaniel
    posted to affy bioinformatics low_level by jfr on 2007-01-09 10:34:57 as **
  • Correlation test to assess low-level processing of high-density oligonucleotide microarray data.
    BMC Bioinformatics, Vol. 6 (2005)
    by A Ploner, LD Miller, P Hall, J Bergh, Y Pawitan
    posted to affy bioinformatics co-expression low_level by jfr on 2007-01-09 10:26:44 as *** along with 1 person ghattem
  • Evaluation of microarray data normalization procedures using spike-in experiments
    BMC Bioinformatics, Vol. 7 (14 June 2006), 300.
    by Patrik Ryden, Henrik Andersson, Mattias Landfors, Linda Naslund, Blanka Hartmanova, Laila Noppa, Anders Sjostedt
    posted to image_analysis low_level microarray_technology two-color by jfr on 2007-01-08 14:11:13 as **
  • Relationship between gene expression and observed intensities in DNA microarrays--a modeling study.
    Nucleic Acids Res, Vol. 34, No. 9. (2006)
    by GA Held, G Grinstein, Y Tu
    posted to affy low_level by jfr on 2007-01-08 13:49:13 as **
  • Statistical development and evaluation of microarray gene expression data filters.
    J Comput Biol, Vol. 12, No. 4. (May 2005), pp. 482-495.
    by S Pounds, C Cheng
    posted to affy low_level by jfr on 2006-12-15 17:12:23 as **
  • Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
    BMC Bioinformatics, Vol. 7 (02 June 2006), 276.
    by Michal J Okoniewski, Crispin J Miller
    posted to co-expression low_level microarray_technology by jfr on 2006-12-15 16:50:45 as ** along with 4 people bertelsen dquest medmhw heliopais
  • Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies.
    BMC Bioinformatics, Vol. 7 (2006)
    by Z Hu, GR Willsky
    posted to affy low_level by jfr on 2006-12-15 16:49:47 as **
  • A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
    BMC Bioinformatics, Vol. 7 (23 October 2006), 464.
    by Simon Katz, Rafael A Irizarry, Xue Lin, Mark Tripputi, Mark W Porter
    posted to affy low_level normalization by jfr on 2006-11-08 12:17:05 as ** along with 1 person ghattem
  • Goulphar: rapid access and expertise for standard two-color microarray normalization methods
    BMC Bioinformatics, Vol. 7 (23 October 2006), 467.
    by Sophie Lemoine, Florence Combes, Nicolas Servant, Stephane Le Crom
    posted to low_level normalization software two-color by jfr on 2006-11-08 12:14:47 as **
  • Evaluating different methods of microarray data normalization
    BMC Bioinformatics, Vol. 7 (23 October 2006), 469.
    by Andre Fujita, Joao R Sato, Leonardo O Rodrigues, Carlos E Ferreira, Mari C Sogayar
    posted to evaluation low_level normalization two-color by jfr on 2006-11-08 12:13:39 as ** along with 1 person shikin
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