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jfr array-cgh [55 articles]

最近 jfr さんのライブラリに追加された論文の中から タグ array-cgh. You can also see everyone's array-cgh.
  • A Probe-Density Based Analysis Method for Array CGH data: Simulation, Normalization and Centralization.
    Bioinformatics (Oxford, England) (4 July 2008)
    by Hung-I Harry I Chen, Fang-Han H Hsu, Yuan Jiang, Mong-Hsun H Tsai, Pan-Chyr C Yang, Paul S S Meltzer, Eric Y Y Chuang, Yidong Chen
    posted to normalization array-cgh by jfr on 2008-09-29 15:17:30 as ** along with 3 people talponer nuin ellakat
  • Classification and feature selection algorithms for multi-class CGH data.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by J Liu, S Ranka, T Kahveci
    posted to methodology classification array-cgh by jfr on 2008-09-26 10:53:39 as ** along with 1 person nuin
  • Classification of arrayCGH data using fused SVM.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by F Rapaport, E Barillot, JP Vert
    posted to methodology classification array-cgh by jfr on 2008-09-26 10:48:45 as ** along with 1 person nuin
  • Integrated genomic and transcriptomic analysis of ductal carcinoma in situ of the breast.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 7. (1 April 2008), pp. 1956-1965.
    by A Vincent-Salomon, C Lucchesi, N Gruel, V Raynal, G Pierron, R Goudefroye, F Reyal, F Radvanyi, R Salmon, JP Thiery, X Sastre-Garau, B Sigal-Zafrani, A Fourquet, O Delattre,
    posted to array-cgh breast_cancer gene_expression integration by jfr on 2008-08-05 14:41:52 as *** along with 1 person Zephyrus
  • A segmental maximum a posteriori approach to genome-wide copy number profiling.
    Bioinformatics (Oxford, England), Vol. 24, No. 6. (15 March 2008), pp. 751-758.
    by R Andersson, CE Bruder, A Piotrowski, U Menzel, H Nord, J Sandgren, TR Hvidsten, T Diaz de Ståhl, JP Dumanski, J Komorowski
    posted to array-cgh bioconductor bioinformatics segmentation by jfr on 2008-07-10 17:15:08 as ***
  • Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data.
    Nucleic acids research, Vol. 36, No. 2. (February 2008)
    by C Klijn, H Holstege, J de Ridder, X Liu, M Reinders, J Jonkers, L Wessels
    posted to array-cgh bioinformatics breast_cancer by jfr on 2008-07-10 17:03:13 as **** along with 1 person Zephyrus
  • Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer
    BMC Genomics, Vol. 8 (20 February 2007), 53.
    by Judith N Kloth, Jan Oosting, Tom van Wezel, Karoly Szuhai, Jeroen Knijnenburg, Arko Gorter, Gemma G Kenter, Gert J Fleuren, Ekaterina S Jordanova
    posted to array-cgh loh snp-arrays by jfr on 2008-07-10 16:47:56 as **
  • Array CGH identifies distinct DNA copy number profiles of oncogenes and tumor suppressor genes in chromosomal- and microsatellite-unstable sporadic colorectal carcinomas
    Journal of Molecular Medicine, Vol. 85, No. 3. (March 2007), pp. 289-300.
    by Lassmann, Silke, Weis, Roland, Makowiec, Frank, Roth, Jasmine, Danciu, Mihai, Hopt, Ulrich, Werner, Martin
    posted to array-cgh colon_cancer by jfr on 2008-07-10 16:40:46 as ** along with 1 person YuvalTabach
  • Common and distinct genomic events in sporadic colorectal cancer and diverse cancer types.
    Cancer research, Vol. 67, No. 22. (15 November 2007), pp. 10736-10743.
    by ES Martin, G Tonon, R Sinha, Y Xiao, B Feng, AC Kimmelman, A Protopopov, E Ivanova, C Brennan, K Montgomery, R Kucherlapati, G Bailey, M Redston, L Chin, RA DePinho
    posted to array-cgh colon_cancer by jfr on 2008-07-10 16:38:40 as read
  • Computational Methods for the Analysis of Array Comparative Genomic Hybridization.
    Cancer informatics, Vol. 2 (2006), pp. 48-58.
    by Raj Chari, William W W Lockwood, Wan L L Lam
    posted to array-cgh review snp-arrays by jfr on 2008-07-10 16:34:36 as read
  • Comprehensive analysis of loss of heterozygosity events in glioblastoma using the 100K SNP mapping arrays and comparison with copy number abnormalities defined by BAC array comparative genomic hybridization.
    Genes, chromosomes & cancer, Vol. 47, No. 3. (March 2008), pp. 221-237.
    by KC Lo, D Bailey, T Burkhardt, P Gardina, Y Turpaz, JK Cowell
    posted to array-cgh loh snp-arrays by jfr on 2008-07-10 16:29:17 as **
  • wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data.
    Nucleic acids research, Vol. 36, No. 7. (April 2008)
    by P Cahan, LE Godfrey, PS Eis, TA Richmond, RR Selzer, M Brent, HL McLeod, TJ Ley, TA Graubert
    posted to array-cgh cnv copy-number methodology by jfr on 2008-06-27 17:08:57 as **
  • Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Agnes Baross, Allen Delaney, Irene H Li, Tarun Nayar, Stephane Flibotte, Hong Qian, Susanna Chan, Jennifer Asano, Adrian Ally, Manqiu Cao, Patricia Birch, Mabel B John, Nicole Fernandes, Anne Go, Giulia Kennedy, Sylvie Langlois, Patrice Eydoux, J Friedman, Marco Marra
    posted to array-cgh comparison copy-number snp-arrays software by jfr on 2008-04-09 13:28:14 as **** along with 1 person niallhaslam
  • Normalization of array-CGH data: influence of copy number imbalances
    BMC Genomics, Vol. 8 (22 October 2007), 382.
    by Johan Staaf, Goran Jonsson, Markus Ringner, Johan Vallon-Christersson
    posted to array-cgh copy-number normalization by jfr on 2008-03-17 14:54:11 as **
  • BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH).
    Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 445-450.
    by B Ylstra, P van den Ijssel, B Carvalho, RH Brakenhoff, GA Meijer
    posted to array-cgh review microarray_technology by jfr on 2008-02-29 17:12:29 as read along with 1 person rdiaz
  • A statistical approach for array CGH data analysis.
    BMC Bioinformatics, Vol. 6 (2005)
    by F Picard, S Robin, M Lavielle, C Vaisse, JJ Daudin
    posted to array-cgh copy-number methodology segmentation by jfr on 2008-02-29 16:44:28 as read along with 7 people GeeSharpMinor archroad rdiaz OscarRueda jackjackjjj shigepong giovenko
  • Analysis of array CGH data: from signal ratio to gain and loss of DNA regions.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3413-3422.
    by P Hupé, N Stransky, JP Thiery, F Radvanyi, E Barillot
    posted to array-cgh bioconductor software by jfr on 2008-02-15 13:59:59 as read along with 1 person OscarRueda
  • Colorectal cancer genomics: evidence for multiple genotypes which influence survival.
    Br J Cancer, Vol. 85, No. 10. (16 November 2001), pp. 1492-1498.
    by PH Rooney, A Boonsong, JA McKay, S Marsh, DA Stevenson, GI Murray, S Curran, NE Haites, J Cassidy, HL McLeod
    posted to array-cgh colon_cancer by jfr on 2008-02-15 11:14:09 as **
  • Analysis of colorectal cancer by comparative genomic hybridization: evidence for induction of the metastatic phenotype by loss of tumor suppressor genes.
    Clin Cancer Res, Vol. 4, No. 4. (April 1998), pp. 879-886.
    by A Paredes-Zaglul, JJ Kang, YP Essig, W Mao, R Irby, M Wloch, TJ Yeatman
    posted to array-cgh colon_cancer by jfr on 2008-02-15 10:45:24 as **
  • Chromosomal alterations during lymphatic and liver metastasis formation of colorectal cancer.
    Neoplasia, Vol. 6, No. 1. (b 2004), pp. 23-28.
    by T Knösel, K Schlüns, U Stein, H Schwabe, PM Schlag, M Dietel, I Petersen
    posted to array-cgh colon_cancer metastasis by jfr on 2008-02-13 17:02:51 as **
  • Incidence of chromosomal imbalances in advanced colorectal carcinomas and their metastases.
    Virchows Arch, Vol. 440, No. 2. (February 2002), pp. 187-194.
    by T Knösel, S Petersen, H Schwabe, K Schlüns, U Stein, PM Schlag, M Dietel, I Petersen
    posted to array-cgh colon_cancer metastasis by jfr on 2008-02-13 17:01:09 as **
  • Pronounced chromosomal instability and multiple gene amplifications characterize ulcerative colitis-associated colorectal carcinomas.
    Cancer Genet Cytogenet, Vol. 147, No. 1. (November 2003), pp. 9-17.
    by JK Habermann, MB Upender, UJ Roblick, S Krüger, S Freitag, H Blegen, HP Bruch, H Schimmelpenning, G Auer, T Ried
    posted to array-cgh colon_cancer copy-number by jfr on 2008-02-13 16:51:32 as **
  • Chromosomal gains and losses in primary colorectal carcinomas detected by CGH and their associations with tumour DNA ploidy, genotypes and phenotypes.
    Br J Cancer, Vol. 80, No. 3-4. (May 1999), pp. 526-535.
    by PM De Angelis, OP Clausen, A Schjølberg, T Stokke
    posted to array-cgh colon_cancer by jfr on 2008-02-13 16:19:40 as **
  • Prognostic significance of recurrent chromosomal aberrations detected by comparative genomic hybridization in sporadic colorectal cancer.
    Int J Colorectal Dis, Vol. 16, No. 1. (February 2001), pp. 38-45.
    by PM De Angelis, T Stokke, M Beigi, O Mjåland, OP Clausen
    posted to array-cgh colon_cancer prognosis by jfr on 2008-02-13 16:18:32 as **
  • Chromosomal aberrations in colorectal cancers and liver metastases analyzed by comparative genomic hybridization.
    Int J Cancer, Vol. 94, No. 5. (1 December 2001), pp. 623-629.
    by H Aragane, C Sakakura, M Nakanishi, R Yasuoka, Y Fujita, H Taniguchi, A Hagiwara, T Yamaguchi, T Abe, J Inazawa, H Yamagishi
    posted to array-cgh colon_cancer by jfr on 2008-02-13 15:42:17 as **
  • Comparative genomic hybridization analysis of primary colorectal carcinomas and their synchronous metastases.
    Genes Chromosomes Cancer, Vol. 24, No. 4. (April 1999), pp. 306-314.
    by F Al-Mulla, WN Keith, IR Pickford, JJ Going, GD Birnie
    posted to array-cgh colon_cancer by jfr on 2008-02-13 15:39:17 as **
  • Analysis of colorectal tumor progression by microdissection and comparative genomic hybridization.
    Genes Chromosomes Cancer, Vol. 37, No. 4. (August 2003), pp. 369-380.
    by HE Alcock, TJ Stephenson, JA Royds, DW Hammond
    posted to array-cgh colon_cancer by jfr on 2008-02-13 15:37:06 as **
  • Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH.
    PLoS Comput Biol, Vol. 3, No. 6. (22 June 2007)
    by Oscar M M Rueda, Ramón Díaz-Uriarte
    posted to array-cgh copy-number methodology software by jfr on 2008-02-13 13:43:18 as ** along with 1 person and 1 group shigepong Bioinformatics
  • High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization
    Carcinogenesis, Vol. 25, No. 8. (1 August 2004), pp. 1345-1357.
    by Kentaro Nakao, Kshama R Mehta, Jane Fridlyand, Dan H Moore, Ajay N Jain, Amalia Lafuente, John W Wiencke, Jonathan P Terdiman, Frederic M Waldman
    posted to array-cgh colon_cancer copy-number by jfr on 2008-02-13 10:45:09 as read along with 2 people Garamonfok cpnP
  • Comparative genomic hybridization reveals a specific pattern of chromosomal gains and losses during the genesis of colorectal tumors.
    Genes Chromosomes Cancer, Vol. 15, No. 4. (April 1996), pp. 234-245.
    by T Ried, R Knutzen, R Steinbeck, H Blegen, E Schröck, K Heselmeyer, S du Manoir, G Auer
    posted to array-cgh colon_cancer progression by jfr on 2008-02-12 16:37:49 as read
  • Stage-specific alterations of the genome, transcriptome, and proteome during colorectal carcinogenesis.
    Genes Chromosomes Cancer (16 October 2006)
    by Jens K K Habermann, Ulrike Paulsen, Uwe J J Roblick, Madhvi B B Upender, Lisa M M McShane, Edward L L Korn, Danny Wangsa, Stefan Krüger, Michael Duchrow, Hans-Peter P Bruch, Gert Auer, Thomas Ried
    posted to array-cgh colon_cancer gene_expression progression by jfr on 2008-02-12 11:54:26 as read along with 1 person rdiaz
  • Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas.
    Cancer Res, Vol. 67, No. 1. (1 January 2007), pp. 41-56.
    by M Grade, P Hörmann, S Becker, AB Hummon, D Wangsa, S Varma, R Simon, T Liersch, H Becker, MJ Difilippantonio, BM Ghadimi, T Ried
    posted to array-cgh colon_cancer gene_expression by jfr on 2008-02-12 11:44:50 as read
  • Array Comparative Genomic Hybridization Analysis of Colorectal Cancer Cell Lines and Primary Carcinomas
    Cancer Res, Vol. 64, No. 14. (15 July 2004), pp. 4817-4825.
    by Eleanor J Douglas, Heike Fiegler, Andrew Rowan, Sarah Halford, David C Bicknell, Walter Bodmer, Ian P Tomlinson, Nigel P Carter
    posted to array-cgh colon_cancer by jfr on 2008-02-12 10:41:43 as read along with 2 people Garamonfok cpnP
  • Colorectal adenoma to carcinoma progression follows multiple pathways of chromosomal instability.
    Gastroenterology, Vol. 123, No. 4. (October 2002), pp. 1109-1119.
    by M Hermsen, C Postma, J Baak, M Weiss, A Rapallo, A Sciutto, G Roemen, JW Arends, R Williams, W Giaretti, A De Goeij, G Meijer
    posted to array-cgh colon_cancer progression by jfr on 2008-02-11 15:14:15 as **
  • Combined Array-Comparative Genomic Hybridization and Single-Nucleotide Polymorphism-Loss of Heterozygosity Analysis Reveals Complex Changes and Multiple Forms of Chromosomal Instability in Colorectal Cancers
    Cancer Res, Vol. 66, No. 7. (1 April 2006), pp. 3471-3479.
    by Michelle Gaasenbeek, Kimberley Howarth, Andrew J Rowan, Patricia A Gorman, Angela Jones, Tracy Chaplin, Ying Liu, David Bicknell, Eleanor J Davison, Heike Fiegler, Nigel P Carter, Rebecca R Roylance, Ian P Tomlinson
    posted to array-cgh colon_cancer snp-arrays by jfr on 2008-02-11 12:24:23 as read along with 1 person cpnP
  • Relationship of Gene Expression and Chromosomal Abnormalities in Colorectal Cancer
    Cancer Res, Vol. 66, No. 4. (15 February 2006), pp. 2129-2137.
    by Dafna Tsafrir, Manny Bacolod, Zachariah Selvanayagam, Ilan Tsafrir, Jinru Shia, Zhaoshi Zeng, Hao Liu, Curtis Krier, Robert F Stengel, Francis Barany, William L Gerald, Philip B Paty, Eytan Domany, Daniel A Notterman
    posted to array-cgh colon_cancer gene_expression integration progression snp-arrays by jfr on 2008-02-11 12:17:14 as read along with 2 people bioguru2000 cpnP
  • Chromosomal Instability in Microsatellite-Unstable and Stable Colon Cancer
    Clin Cancer Res, Vol. 12, No. 21. (1 November 2006), pp. 6379-6385.
    by Karolin Trautmann, Jonathan P Terdiman, Amy J French, Ritu Roydasgupta, Nancy Sein, Sanjay Kakar, Jane Fridlyand, Antoine M Snijders, Donna G Albertson, Stephen N Thibodeau, Frederic M Waldman
    posted to array-cgh colon_cancer copy-number msi by jfr on 2008-02-11 12:05:45 as ** along with 1 person cpnP
  • ACTuDB, a new database for the integrated analysis of array-CGH and clinical data for tumors
    Oncogene, Vol. aop, No. current.
    by P Hupé, P La Rosa, S Liva, S Lair, N Servant, E Barillot
    posted to array-cgh copy-number database by jfr on 2008-02-07 09:52:30 as read along with 2 people frohike blackm0k
  • High-resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
    Genome Biology, Vol. 8 (09 October 2007), R215.
    by Suet F Chin, Andrew E Teschendorff, John C Marioni, Yanzhong Wang, Nuno L Barbosa-Morais, Natalie P Thorne, Jose L Costa, Sarah E Pinder, Mark A van de Wiel, Andrew R Green, Ian O Ellis, Peggy L Porter, Simon Tavare, James D Brenton, Bauke Ylstra, Carlos Caldas
    posted to array-cgh breast_cancer estrogen subtypes by jfr on 2007-12-07 17:51:31 as *** along with 2 people rdiaz chrisamiller
  • Characterization of breast cancer by array comparative genomic hybridization.
    Biochem Cell Biol, Vol. 85, No. 4. (August 2007), pp. 497-508.
    by J Climent, JL Garcia, JH Mao, J Arsuaga, J Perez-Losada
    posted to array-cgh breast_cancer copy-number review by jfr on 2007-12-04 17:51:46 as ** along with 1 person and 1 group Zephyrus Breast cancer
  • Identification of typical medullary breast carcinoma as a genomic sub-group of basal-like carcinomas, a heterogeneous new molecular entity
    Breast Cancer Research, Vol. 9 (06 April 2007), R24.
    by Anne Vincent-Salomon, Nadege Gruel, Carlo Lucchesi, Gaetan M Grogan, Remi Dendale, Brigitte Sigal-Zafrani, Michel Longy, Virginie Raynal, Gaelle Pierron, Isabelle de Mascarel, Corinne Taris, Dominique Stoppa-Lyonnet, Jean-Yves Pierga, Remy Salmon, Xavier Sastre-Garau, Alain Fourquet, Olivier Delattre, Patricia de Cremoux, Alain Aurias
    posted to array-cgh basal_subtype breast_cancer by jfr on 2007-11-23 15:56:09 as ***
  • Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer.
    Genes Chromosomes Cancer, Vol. 45, No. 11. (November 2006), pp. 1033-1040.
    by A Bergamaschi, YH Kim, P Wang, T Sørlie, T Hernandez-Boussard, PE Lonning, R Tibshirani, AL Børresen-Dale, JR Pollack
    posted to array-cgh breast_cancer copy-number subtypes by jfr on 2007-03-09 17:19:07 as **** along with 4 people frohike srp33 rdiaz emb51
  • Novel patterns of genome rearrangement and their association with survival in breast cancer.
    Genome Res, Vol. 16, No. 12. (December 2006), pp. 1465-1479.
    by J Hicks, A Krasnitz, B Lakshmi, NE Navin, M Riggs, E Leibu, D Esposito, J Alexander, J Troge, V Grubor, S Yoon, M Wigler, K Ye, AL Børresen-Dale, B Naume, E Schlicting, L Norton, T Hägerström, L Skoog, G Auer, S Månér, P Lundin, A Zetterberg
    posted to array-cgh breast_cancer by jfr on 2007-03-01 11:45:51 as ** along with 2 people cerami chrisamiller
  • Breast tumor copy number aberration phenotypes and genomic instability.
    BMC Cancer, Vol. 6 (2006)
    by J Fridlyand, AM Snijders, B Ylstra, H Li, A Olshen, R Segraves, S Dairkee, T Tokuyasu, BM Ljung, AN Jain, J McLennan, J Ziegler, K Chin, S Devries, H Feiler, JW Gray, F Waldman, D Pinkel, DG Albertson
    posted to array-cgh breast_cancer copy-number by jfr on 2007-03-01 11:03:16 as **** along with 4 people rdiaz Garamonfok frohike chrisamiller
  • Using array-comparative genomic hybridization to define molecular portraits of primary breast cancers
    Oncogene, Vol. aop, No. current.
    by SF Chin, Y Wang, NP Thorne, AE Teschendorff, SE Pinder, M Vias, A Naderi, I Roberts, NL Barbosa-Morais, MJ Garcia, NG Iyer, T Kranjac, JFR Robertson, S Aparicio, S Tavaré, I Ellis, JD Brenton, C Caldas,
    posted to subtypes breast_cancer array-cgh by jfr on 2007-02-06 17:56:53 as **
  • Candidate Genes in Breast Cancer Revealed by Microarray-Based Comparative Genomic Hybridization of Archived Tissue
    Cancer Res, Vol. 65, No. 2. (15 January 2005), pp. 439-447.
    by Michelle Nessling, Karsten Richter, Carsten Schwaenen, Peter Roerig, Gunnar Wrobel, Swen Wessendorf, Bjorn Fritz, Martin Bentz, Hans-Peter Sinn, Bernhard Radlwimmer, Peter Lichter
    posted to ffpe breast_cancer array-cgh by jfr on 2007-01-30 09:41:10 as * along with 1 person rlmcinnes
  • Comparative genomic hybridization profiles in human BRCA1 and BRCA2 breast tumors highlight differential sets of genomic aberrations.
    Cancer Res, Vol. 65, No. 3. (1 February 2005), pp. 822-827.
    by EH van Beers, T van Welsem, LF Wessels, Y Li, RA Oldenburg, P Devilee, CJ Cornelisse, S Verhoef, FB Hogervorst, LJ van't Veer, PM Nederlof
    posted to breast_cancer brca array-cgh by jfr on 2007-01-29 16:00:13 as *
  • Cross-platform array comparative genomic hybridization meta-analysis separates hematopoietic and mesenchymal from epithelial tumors
    Oncogene, Vol. aop, No. current.
    by K Jong, E Marchiori, A van der Vaart, SF Chin, B Carvalho, M Tijssen, PP Eijk, P van den Ijssel, H Grabsch, P Quirke, JJ Oudejans, GA Meijer, C Caldas, B Ylstra
    posted to array-cgh meta-analysis by jfr on 2007-01-12 16:50:46 as *** along with 2 people and 1 group ealloza Garamonfok BioinfoCIPF
  • A hierarchical clustering method for estimating copy number variation.
    Biostatistics (23 October 2006)
    by Baifang Xing, Celia M T M Greenwood, Shelley B B Bull
    posted to clustering array-cgh by jfr on 2007-01-11 13:16:34 as ** along with 1 person and 1 group shigepong Bioinformatics
  • Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel.
    Mol Cancer Ther, Vol. 5, No. 4. (April 2006), pp. 853-867.
    by KJ Bussey, K Chin, S Lababidi, M Reimers, WC Reinhold, WL Kuo, F Gwadry, Ajay, H Kouros-Mehr, J Fridlyand, A Jain, C Collins, S Nishizuka, G Tonon, A Roschke, K Gehlhaus, I Kirsch, DA Scudiero, JW Gray, JN Weinstein
    posted to array-cgh integration by jfr on 2006-12-15 16:35:49 as read along with 2 people rdiaz bioguru2000
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