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jfr Liu [101 articles]

最近 jfr さんのライブラリに追加された論文の中から 著者が Liu. であるものをリストアップしています. You can also see everyone's Liu.
  • The complete genome of an individual by massively parallel DNA sequencing
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876.
    by David A Wheeler, Maithreyan Srinivasan, Michael Egholm, Yufeng Shen, Lei Chen, Amy Mcguire, Wen He, Yi-Ju Chen, Vinod Makhijani, Thomas G Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L Turcotte, Gerard P Irzyk, James R Lupski, Craig Chinault, Xing-Zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M Muzny, Marcel Margulies, George M Weinstock, Richard A Gibbs, Jonathan M Rothberg
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
  • A map of human cancer signaling
    Mol Syst Biol, Vol. 3 (18 December 2007)
    by Qinghua Cui, Yun Ma, Maria Jaramillo, Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-Mccourt, Enrico O Purisima, Edwin Wang
  • Cancer classification using Rotation Forest.
    Computers in biology and medicine, Vol. 38, No. 5. (May 2008), pp. 601-610.
    by KH Liu, DS Huang
    posted to methodology classification by jfr on 2008-09-04 10:14:50 as *
  • MicroRNA-encoding long non-coding RNAs
    BMC Genomics, Vol. 9 (21 May 2008), 236.
    by Shunmin He, Hua Su, Changning Liu, Geir Skogerbo, Housheng He, Dandan He, Xiaopeng Zhu, Tao Liu, Yi Zhao, Runsheng Chen
    posted to mirna by jfr on 2008-08-05 14:22:56 as ** along with 3 people ealloza biozy daforerog
  • Higher order structure in the cancer transcriptome and systems medicine
    Mol Syst Biol, Vol. 3 (13 March 2007)
    by Edison T Liu, Thomas Lemberger
    posted to comment by jfr on 2008-07-31 13:52:24 as read along with 1 person srp33
  • In the pursuit of complexity: systems medicine in cancer biology.
    Cancer cell, Vol. 9, No. 4. (April 2006), pp. 245-247.
    by ET Liu, VA Kuznetsov, LD Miller
    posted to comment by jfr on 2008-07-21 14:32:45 as read
  • Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods.
    Journal of biomedical informatics, Vol. 41, No. 4. (August 2008), pp. 570-579.
    by HC Liu, CY Chen, YT Liu, CB Chu, DC Liang, LY Shih, CJ Lin
    posted to meta-analysis platform_comparison by jfr on 2008-07-17 14:05:53 as **
  • Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data.
    Nucleic acids research, Vol. 36, No. 2. (February 2008)
    posted to array-cgh bioinformatics breast_cancer by jfr on 2008-07-10 17:03:13 as ****
  • Genome-wide promoter analysis uncovers portions of the cancer methylome.
    Cancer research, Vol. 68, No. 8. (15 April 2008), pp. 2661-2670.
    posted to methylation by jfr on 2008-06-17 18:00:18 as ***
  • Bayesian biclustering of gene expression data
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Jiajun Gu, Jun Liu
    posted to clustering by jfr on 2008-06-17 17:47:30 as * along with 5 people imina tvdbulck yangc bertelsen dragonrez
  • Comprehensive assessment of DNA copy number alterations in human prostate cancers using Affymetrix 100K SNP mapping array.
    Genes, chromosomes & cancer, Vol. 45, No. 11. (November 2006), pp. 1018-1032.
    by W Liu, B Chang, J Sauvageot, L Dimitrov, M Gielzak, T Li, G Yan, J Sun, J Sun, TS Adams, AR Turner, JW Kim, DA Meyers, SL Zheng, WB Isaacs, J Xu
    posted to copy-number snp-arrays by jfr on 2008-06-11 09:02:04 as read
  • MicroRNA expression profiling using microarrays.
    Nature protocols, Vol. 3, No. 4. (2008), pp. 563-578.
    by CG Liu, GA Calin, S Volinia, CM Croce
    posted to microarray_technology mirna by jfr on 2008-05-21 13:41:15 as ** along with 2 people frohike jyuh
  • Pathway Analysis of Microarray Data via Regression
    Journal of Computational Biology, Vol. 0, No. 0. (0), pp. 1-9.
    by AJ Adewale, I Dinu, JD Potter, Q Liu, Y Yasui
  • Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
    Nature Biotechnology, Vol. 26, No. 3. (07 March 2008), pp. 305-312.
    by Eric W Deutsch, Catherine A Ball, Jules J Berman, Steven G Bova, Alvis Brazma, Roger E Bumgarner, David Campbell, Helen C Causton, Jeffrey H Christiansen, Fabrice Daian, Delphine Dauga, Duncan R Davidson, Gregory Gimenez, Young A Goo, Sean Grimmond, Thorsten Henrich, Bernhard G Herrmann, Michael H Johnson, Martin Korb, Jason C Mills, Asa J Oudes, Helen E Parkinson, Laura E Pascal, Nicolas Pollet, John Quackenbush, Mirana Ramialison, Martin Ringwald, David Salgado, Susanna-Assunta Sansone, Gavin Sherlock, Christian J Stoeckert, Jason Swedlow, Ronald C Taylor, Laura Walashek, Anthony Warford, David G Wilkinson, Yi Zhou, Leonard I Zon, Alvin Y Liu, Lawrence D True
  • Reducing Microarray Data via Nonnegative Matrix Factorization for Visualization and Clustering Analysis
    Journal of Biomedical Informatics, Vol. In Press, Accepted Manuscript
    by Weixiang Liu, Kehong Yuan, Datian Ye
    posted to clustering nmf by jfr on 2008-04-28 16:28:56 as ** along with 3 people dragonrez akastrin jyuh
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
  • Quick Calculation for Sample Size while Controlling False Discovery Rate with Application to Microarray Analysis.
    Bioinformatics (19 January 2007)
    by Peng Liu, J T T Gene Hwang
  • Expression profiling of microRNA using oligo DNA arrays
    Methods, Vol. 44, No. 1. (January 2008), pp. 22-30.
    by Chang-Gong Liu, Riccardo Spizzo, George A Calin, Carlo M Croce
    posted to microarray_technology mirna by jfr on 2008-04-14 11:06:02 as * along with 1 person jyuh
  • Discovery of protein interaction networks shared by diseases.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2007), pp. 76-87.
    by L Sam, Y Liu, J Li, C Friedman, YA Lussier
    posted to methodology protein_interaction by jfr on 2008-04-11 16:43:53 as ***
  • Comparative evaluation of gene-set analysis methods
    BMC Bioinformatics, Vol. 8 (07 November 2007), 431.
    by Qi Liu, Irina Dinu, Adeniyi J Adewale, John D Potter, Yutaka Yasui
  • Ultraconserved Regions Encoding ncRNAs Are Altered in Human Leukemias and Carcinomas.
    Cancer Cell, Vol. 12, No. 3. (September 2007), pp. 215-229.
    by GA Calin, CG Liu, M Ferracin, T Hyslop, R Spizzo, C Sevignani, M Fabbri, A Cimmino, EJ Lee, SE Wojcik, M Shimizu, E Tili, S Rossi, C Taccioli, F Pichiorri, X Liu, S Zupo, V Herlea, L Gramantieri, G Lanza, H Alder, L Rassenti, S Volinia, TD Schmittgen, TJ Kipps, M Negrini, CM Croce
  • mRNA/microRNA gene expression profile in microsatellite unstable colorectal cancer
    Molecular Cancer, Vol. 6 (23 August 2007), 54.
    by Giovanni Lanza, Manuela Ferracin, Roberta Gafa, Angelo Veronese, Riccardo Spizzo, Flavia Pichiorri, Chang-Gong Liu, George A Calin, Carlo M Croce, Massimo Negrini
    posted to colon_cancer gene_expression mirna msi by jfr on 2008-04-09 12:46:13 as **
  • Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories.
    Bioinformatics (15 November 2007)
    by Da Yang, Yanhui Li, Hui Xiao, Qing Liu, Min Zhang, Jing Zhu, Wencai Ma, Chen Yao, Jing Wang, Dong Wang, Zheng Guo, Baofeng Yang
    posted to functional_analysis gene_ontology by jfr on 2008-04-07 12:58:32 as * along with 2 people jyuh ghattem
  • The transcriptional landscape of the mammalian genome.
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563.
    by P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells, R Kodzius, K Shimokawa, VB Bajic, SE Brenner, S Batalov, AR Forrest, M Zavolan, MJ Davis, LG Wilming, V Aidinis, JE Allen, A Ambesi-Impiombato, R Apweiler, RN Aturaliya, TL Bailey, M Bansal, L Baxter, KW Beisel, T Bersano, H Bono, AM Chalk, KP Chiu, V Choudhary, A Christoffels, DR Clutterbuck, ML Crowe, E Dalla, BP Dalrymple, B de Bono, G Della Gatta, D di Bernardo, T Down, P Engstrom, M Fagiolini, G Faulkner, CF Fletcher, T Fukushima, M Furuno, S Futaki, M Gariboldi, P Georgii-Hemming, TR Gingeras, T Gojobori, RE Green, S Gustincich, M Harbers, Y Hayashi, TK Hensch, N Hirokawa, D Hill, L Huminiecki, M Iacono, K Ikeo, A Iwama, T Ishikawa, M Jakt, A Kanapin, M Katoh, Y Kawasawa, J Kelso, H Kitamura, H Kitano, G Kollias, SP Krishnan, A Kruger, SK Kummerfeld, IV Kurochkin, LF Lareau, D Lazarevic, L Lipovich, J Liu, S Liuni, S McWilliam, M Madan Babu, M Madera, L Marchionni, H Matsuda, S Matsuzawa, H Miki, F Mignone, S Miyake, K Morris, S Mottagui-Tabar, N Mulder, N Nakano, H Nakauchi, P Ng, R Nilsson, S Nishiguchi, S Nishikawa, F Nori, O Ohara, Y Okazaki, V Orlando, KC Pang, WJ Pavan, G Pavesi, G Pesole, N Petrovsky, S Piazza, J Reed, JF Reid, BZ Ring, M Ringwald, B Rost, Y Ruan, SL Salzberg, A Sandelin, C Schneider, C Schönbach, K Sekiguchi, CA Semple, S Seno, L Sessa, Y Sheng, Y Shibata, H Shimada, K Shimada, D Silva, B Sinclair, S Sperling, E Stupka, K Sugiura, R Sultana, Y Takenaka, K Taki, K Tammoja, SL Tan, S Tang, MS Taylor, J Tegner, SA Teichmann, HR Ueda, E van Nimwegen, R Verardo, CL Wei, K Yagi, H Yamanishi, E Zabarovsky, S Zhu, A Zimmer, W Hide, C Bult, SM Grimmond, RD Teasdale, ET Liu, V Brusic, J Quackenbush, C Wahlestedt, JS Mattick, DA Hume, C Kai, D Sasaki, Y Tomaru, S Fukuda, M Kanamori-Katayama, M Suzuki, J Aoki, T Arakawa, J Iida, K Imamura, M Itoh, T Kato, H Kawaji, N Kawagashira, T Kawashima, M Kojima, S Kondo, H Konno, K Nakano, N Ninomiya, T Nishio, M Okada, C Plessy, K Shibata, T Shiraki, S Suzuki, M Tagami, K Waki, A Watahiki, Y Okamura-Oho, H Suzuki, J Kawai, Y Hayashizaki, ,
  • MicroRNA expression profiles associated with prognosis and therapeutic outcome in colon adenocarcinoma.
    JAMA, Vol. 299, No. 4. (30 January 2008), pp. 425-436.
    by AJ Schetter, SY Leung, JJ Sohn, KA Zanetti, ED Bowman, N Yanaihara, ST Yuen, TL Chan, DL Kwong, GK Au, CG Liu, GA Calin, CM Croce, CC Harris
    posted to colon_cancer mirna prognosis therapy by jfr on 2008-03-11 10:36:19 as read along with 1 person frohike
  • Allelic loss of chromosome 18q and prognosis in colorectal cancer.
    N Engl J Med, Vol. 331, No. 4. (28 July 1994), pp. 213-221.
    by J Jen, H Kim, S Piantadosi, ZF Liu, RC Levitt, P Sistonen, KW Kinzler, B Vogelstein, SR Hamilton
    posted to 18q_loh colon_cancer prognosis by jfr on 2008-02-20 12:51:33 as read
  • PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data.
    Genome Res (5 October 2007)
    by Kai Wang, Mingyao Li, Dexter Hadley, Rui Liu, Joseph Glessner, Struan F A F Grant, Hakon Hakonarson, Maja Bucan
    posted to copy-number methodology snp-arrays software by jfr on 2008-02-15 17:00:48 as **
  • CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.
    BMC Bioinformatics, Vol. 7 (2006)
    by J Huang, W Wei, J Chen, J Zhang, G Liu, X Di, R Mei, S Ishikawa, H Aburatani, KW Jones, MH Shapero
  • Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon.
    Oncogene, Vol. 21, No. 31. (18 July 2002), pp. 4855-4862.
    by TT Zou, FM Selaru, Y Xu, V Shustova, J Yin, Y Mori, D Shibata, F Sato, S Wang, A Olaru, E Deacu, TC Liu, JM Abraham, SJ Meltzer
    posted to colon_cancer gene_expression by jfr on 2008-02-12 16:02:46 as **
  • Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1958-1963.
    by X Di, H Matsuzaki, TA Webster, E Hubbell, G Liu, S Dong, D Bartell, J Huang, R Chiles, G Yang, MM Shen, D Kulp, GC Kennedy, R Mei, KW Jones, S Cawley
  • Combined Array-Comparative Genomic Hybridization and Single-Nucleotide Polymorphism-Loss of Heterozygosity Analysis Reveals Complex Changes and Multiple Forms of Chromosomal Instability in Colorectal Cancers
    Cancer Res, Vol. 66, No. 7. (1 April 2006), pp. 3471-3479.
    by Michelle Gaasenbeek, Kimberley Howarth, Andrew J Rowan, Patricia A Gorman, Angela Jones, Tracy Chaplin, Ying Liu, David Bicknell, Eleanor J Davison, Heike Fiegler, Nigel P Carter, Rebecca R Roylance, Ian P Tomlinson
    posted to array-cgh colon_cancer snp-arrays by jfr on 2008-02-11 12:24:23 as read along with 1 person cpnP
  • Relationship of Gene Expression and Chromosomal Abnormalities in Colorectal Cancer
    Cancer Res, Vol. 66, No. 4. (15 February 2006), pp. 2129-2137.
    by Dafna Tsafrir, Manny Bacolod, Zachariah Selvanayagam, Ilan Tsafrir, Jinru Shia, Zhaoshi Zeng, Hao Liu, Curtis Krier, Robert F Stengel, Francis Barany, William L Gerald, Philip B Paty, Eytan Domany, Daniel A Notterman
  • Model-based Analysis of 2-Color Arrays (MA2C)
    Genome Biology, Vol. 8 (29 August 2007), R178.
    by Jun S Song, Evan W Johnson, Xiaopeng Zhu, Xinmin Zhang, Wei Li, Arjun K Manrai, Jun S Liu, Runsheng Chen, Shirley X Liu
    posted to normalization tiling_array two-color by jfr on 2008-02-04 13:34:47 as * along with 1 person caseybrown
  • AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Bioinformatics (27 July 2007)
    by Hongfang Liu, Barry R R Zeeberg, Qu Gang, A Gunes G Koru, Alessandro Ferrucci, Ari Kahn, Michael C C Ryan, Antej Nuhanovic, Peter J J Munson, William C C Reinhold, David W W Kane, John N N Weinstein
  • DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    BMC Bioinformatics, Vol. 8 (02 November 2007), 426.
    by Brad T Sherman, Da W Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
  • The Stanford Tissue Microarray Database.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by RJ Marinelli, K Montgomery, CL Liu, NH Shah, W Prapong, M Nitzberg, ZK Zachariah, GJ Sherlock, Y Natkunam, RB West, M van de Rijn, PO Brown, CA Ball
    posted to database tma by jfr on 2008-02-04 10:47:43 as *
  • Common human cancer genes discovered by integrated gene-expression analysis.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by Y Lu, Y Yi, P Liu, W Wen, M James, D Wang, M You
    posted to cancer classification meta-analysis by jfr on 2008-02-04 10:39:16 as ***
  • Getting started in tiling microarray analysis.
    PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1842-1844.
    by XS Liu
  • MicroRNA expression profiles for the NCI-60 cancer cell panel
    Mol Cancer Ther, Vol. 6, No. 5. (1 May 2007), pp. 1483-1491.
    by Paul E Blower, Joseph S Verducci, Shili Lin, Jin Zhou, Ji-Hyun Chung, Zunyan Dai, Chang-Gong Liu, William Reinhold, Philip L Lorenzi, Eric P Kaldjian, Carlo M Croce, John N Weinstein, Wolfgang Sadee
    posted to mirna nci60 by jfr on 2007-12-17 12:10:12 as **** along with 1 person elzodw
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
  • Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis
    Genome Biology, Vol. 8 (11 May 2007), R77.
    by Yingchun Liu, Markus Ringner
    posted to integration regulation by jfr on 2007-12-07 13:25:22 as *** along with 1 person ptrobajo
  • Improving gene set analysis of microarray data by SAM-GS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Irina Dinu, John Potter, Thomas Mueller, Qi Liu, Adeniyi Adewale, Gian Jhangri, Gunilla Einecke, Konrad Famulski, Philip Halloran, Yutaka Yasui
  • miRAS: a data processing system for miRNA expression profiling study
    BMC Bioinformatics, Vol. 8 (04 August 2007), 285.
    by Feng Tian, Huayue Zhang, Xinyu Zhang, Chi Song, Yongjing Xia, Yiqing Wu, Xiangjun Liu
    posted to database mirna by jfr on 2007-12-04 15:26:06 as ** along with 2 people mfabbri srp33
  • Mining pathway signatures from microarray data and relevant biological knowledge.
    J Biomed Inform, Vol. 40, No. 6. (December 2007), pp. 698-706.
    by E Panteris, S Swift, A Payne, X Liu
    posted to pathway_analysis by jfr on 2007-11-26 10:17:08 as ** along with 2 people jyuh AlexanderPico
  • Bayesian meta-analysis models for microarray data: a comparative study
    BMC Bioinformatics, Vol. 8 (07 March 2007), 80.
    by Erin M Conlon, Joon J Song, Anna Liu
    posted to meta-analysis by jfr on 2007-11-23 16:04:34 as ** along with 4 people jyuh shigepong ugengma daforerog
  • Multi-group cancer outlier differential gene expression detection.
    Comput Biol Chem, Vol. 31, No. 2. (April 2007), pp. 65-71.
    by F Liu, B Wu
    posted to no-tag by jfr on 2007-09-13 11:14:11 as ** along with 1 person shigepong
  • Whole-genome cartography of estrogen receptor alpha binding sites.
    PLoS Genet, Vol. 3, No. 6. (June 2007)
    by CY Lin, VB Vega, JS Thomsen, T Zhang, SL Kong, M Xie, KP Chiu, L Lipovich, DH Barnett, F Stossi, A Yeo, J George, VA Kuznetsov, YK Lee, TH Charn, N Palanisamy, LD Miller, E Cheung, BS Katzenellenbogen, Y Ruan, G Bourque, CL Wei, ET Liu
  • Domain-enhanced analysis of microarray data using GO annotations
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1225-1234.
    by Jiajun Liu, Jacqueline M Hughes-Oliver, Alan J Menius
    posted to functional_analysis by jfr on 2007-09-05 12:03:38 as ** along with 2 people jyuh zwang
  • Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e96.
    by Manway Liu, Arthur Liberzon, Sek W Kong, Weil R Lai, Peter J Park, Isaac S Kohane, Simon Kasif
  • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/jfr/author/Liu

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